hcrtr2 (hcrtr2)


Basic Information

Item Value
gene id hcrtr2
gene name hcrtr2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 34390070 ~ 34406831 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576475.2
TTTGGAGAGATGGTCACGTTGACGATGCCAAAGCGATTCATATCTGGTGCATAGCCATTCTATTAGCAGACGTTAAATCTGGTAGTCTGTTGCTCGTTCCAGACGCGCTGAATGGACACTAAAAAGACCGTAAACACTTCCAACTATTGAATGATGTCGGGGATCACAGTGAATTCGGATTGTGTAGAATGTTCACCCCCTTCGCATGAGCCTTGCACCACGGAATTACACCCATACTCTAGCATCGATGACGATGATGAACTTCTGAAGTATATCTGGAGGGAATATTTGCATCCTAAGCAATATGAATGGGTTCTTATTGTAGGATAcataattgttttttttgtttctctCATTGGAAACACACTAGTTTGTTTTGCAGTGTGGAAAAACCATCACATGCGCACGGTGACCAACTGTTTCATTGTGAATCTCTCCTTTGCTGATGTCCTGGTCACCATCACCTGTCTCCCGGCAAGTCTTGTGGTAGACATTACAGAAACATGGTTCTTTGGAAACACTCTTTGTAAAATACTGCCTTACTTACAGACAATCTCCGTATCTGTGTCAGTCTTGACTCTGAGCTGCATTGCTCTCGACCGCTGGTACGCAATCTGCCACCCGCTGATGTTCAAAAGCACGGCCAGGCGTGCCCGCAAGAGTATCCTCCTCATCTGGGGGGTTTCCTGTATCATCATGATCCCCCAGGCCATCGTGATGGAGTGCAGCAGCCTGCTCCCTGAGCTCACCAACAAAACCAGCCTTTTCACTGTGTGTGAAGAGCGCTGGGGAGCTGATGTCTACCCCAAGGTGTATCACACCTGTTTCTTCATCGTCACATACTTCGCTCCCCTCTGTCTGATGGTTCTGGCATACATACAGATATGTCATAAACTGTGGTGTCAACAGATTCCTGGAACGTCATCTGTGCTACAGAGGAAGCGGACGCCCCTCCAGGGTTCCACTTATTCTCCAGGTCCTGGGGAGTCAGCCAGGGTCCGGACCAGCACAGTGTCCGCTGAGATCAAACAGGTCCGGGCCCGCAGGAAGACAGCCTGCATGCTGATGGTGGTCCTCTTTGTCTTTGCCCTCTGCTACCTGCCCATCAGCGTACTCAACATCATGAAAAGAGTGTTTGGGACGTTTAAGTACACAAACAGCAGAGAGACTGTATACGCCTGGTTCACGTTCTCACATTGGCTGATATATGCCAACAGTGCTGCAAATCCAATCATCTATAACTTTTTAAGTGGGAAGTTTCGAGCGGAATTCAAAGCAGCATTTTCCTGTCGCTCTTTTGGCCGATGTCAGAACCAAACAGAGGGCATAAGGAGAAGAATGAACACTGACAGCCGTAAATCCTTGTCCACTCAAGTCAACAACATGGACAATGTTTCACGGATATCTGACCATGTGGTTTAATCCTATACTGGGGCATGCTGGGAGATCTTAGAATTGCACCATGCCACCCAGGACACACTGGCATTCACTGTCTCCATGATACAAAGGTCACGAATAGAACACATTGTAACGTCAAGCTTTTAATAACAGACCACATACTCTGAATGGACTGAAAGCACTCAATATCCACCAACCTGTGTGAAAGCAAATCCCTCCCCTGCTGGAACCTCTACCCAGGGGAAGAGAAGTGATTTGAATGAGTCGTGTCTGTTACAGATGGATAACCGTTCTATTGGCTCCAGTCTTTGGTTCTCATCCCACCAGAGGCAGGAATTAGCACCCCATGGTGTTGTACACCTCACCAGAAAGGACAGACTGAAGGATGAATCACAATGCAAAGATTAAACCCTATCAACGTTTATTATCAAAGCTTCTTAAATCTGAAGATGGATtacaaaataacaatttgtttgtTAATTAGCCACAATAGTGTACTACGTGTGGATTTGTGGTGATGTTTACTTATGTCTTATGATGACTACttatcatcataataataataataattattattgctattattaatatttgtattattgttgttgttgatgctgttgtttattgttttttattgttattgttattaccTTCATATTCTATGTGTAATATCAGGTAATATGTTTACAGATATGGTATTGTACATTAACAATCCAGCCAAAGTTCGAAAATCTCCACGGATGAATACATCTACAGAGGTTTTCATGACAAGGCGGAAGGTTAAATTCTCACAACCTTACATCATAAAGACGGCTTTGTTTCTAATTCATTGCTGGATCAACCAACAAGCAATCAGAATGAAATAACCCTACAAGACATTGAATtctgattttaaaaaatgaacaaCGTCTTATTTGATGTGAACCCTTGAAAAGCAGTTTCTACAATCGCTTTTGTTTGTTTTGATTTCTTCTCGGGTGTTTGTTGTGATGATTTCTTATTGGTGTTTCTTGTTATTTCATGTACTTTTTGAAAAGTATGTTAAGCAGTTTCCCCTAAAAATGTATCTGTTCTAAAAATGTATCTGTTCATGTAAGTGATTGTTGTTTTTGATCTGTTTGAAGGTaaacattttaaacatt
>TU1931039
TGTAATATCAGGTAATATGTTTACAGATATGGTATTGTACATTAACAATCCAGCCAAAGTTCGAAAATCTCCACGGATGAATACATCTACAGAGGTTTTCATGACAAGGCGGAAGGTTAAATTCTCACAACCTTACATCATAAAGACGGCTTTGTTTCTAATTCATTGCTGGATCAACCAACAAGCAATCAGAATGAAATAACCCTACAAGACATTGAATtctgattttaaaaaatgaacaaCGTCTTATTTGATGTGAACCCTTGAAAAGCAGTTTCTACAATCGCTTTTGTTTGTTTT

Function

symbol description
hcrtr2 Predicted to enable orexin receptor activity. Acts upstream of or within circadian behavior; melatonin metabolic process; and regulation of circadian sleep/wake cycle, sleep. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain and spinal cord. Orthologous to human HCRTR2 (hypocretin receptor 2).

NR:

description
PREDICTED: orexin receptor type 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576475.2 False 2540 mRNA 0.42 7 34390070 34406831
TU1931039 True 300 lncRNA 0.34 1 34390248 34390547

Neighbor

gene id symbol gene type direction distance location
gfral LOC106589804 coding downstream 485 34380038 ~ 34389585 (-)
trnav-uac-22 NA coding downstream 257593 34132402 ~ 34132477 (-)
znf451 znf451 coding downstream 406180 33972142 ~ 33983890 (-)
bag2 bag2 coding downstream 418246 33969088 ~ 33971824 (-)
LOC110499535 NA coding downstream 451580 33850060 ~ 33938490 (-)
fam83b LOC106589806 coding upstream 7518 34414349 ~ 34435461 (-)
mlip LOC106589807 coding upstream 47732 34454563 ~ 34498964 (-)
lrrc1 LOC106589808 coding upstream 110407 34517238 ~ 34557314 (-)
eloal LOC106589809 coding upstream 152565 34559396 ~ 34568186 (-)
fbxo9 LOC106589812 coding upstream 200324 34607155 ~ 34612817 (-)
G1688246 NA non-coding downstream 253 34389608 ~ 34389817 (-)
G1688188 NA non-coding downstream 55921 34333847 ~ 34334149 (-)
G1688186 NA non-coding downstream 57979 34331880 ~ 34332091 (-)
G1688185 NA non-coding downstream 58432 34331430 ~ 34331638 (-)
G1688184 NA non-coding downstream 58730 34331054 ~ 34331340 (-)
G1688291 NA non-coding upstream 100160 34506991 ~ 34507206 (-)
G1688215 NA non-coding upstream 146623 34553454 ~ 34627016 (-)
G1688328 gsh1 non-coding upstream 181320 34588151 ~ 34588969 (-)
G1688337 NA non-coding upstream 215210 34622041 ~ 34622397 (-)
G1688356 LOC106589817 non-coding upstream 260833 34667664 ~ 34668042 (-)
G1687007 LOC106589782 other downstream 845832 33531084 ~ 33544238 (-)
LOC110499358 LOC106589782 other downstream 855794 33530945 ~ 33535225 (-)
G1686887 NA other downstream 1312043 33077810 ~ 33078027 (-)
LOC110499342 LOC106589762 other downstream 1577216 32810995 ~ 32812999 (-)
G1684920 NA other downstream 2977226 31407594 ~ 31412844 (-)
G1689130 NA other upstream 852158 35258989 ~ 35259818 (-)
G1689131 NA other upstream 853055 35259886 ~ 35260208 (-)
G1689461 NA other upstream 1071283 35478114 ~ 35480057 (-)
G1689556 NA other upstream 1236537 35643368 ~ 35643777 (-)
LOC110499416 dnah17 other upstream 1458869 35864651 ~ 35951415 (-)

Expression


Co-expression Network