Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118942064 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048584.1 |
| NCBI id | CM023238.2 |
| chromosome length | 46616863 |
| location | 34499031 ~ 34503666 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005037989.1 | True | 654 | mRNA | 0.44 | 5 | 34499031 | 34503666 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| hmgcll1 | LOC106589805 | coding | upstream | 119665 | 34347154 ~ 34379366 (+) |
| bmp5 | LOC106589803 | coding | upstream | 186881 | 34273867 ~ 34312150 (+) |
| col21a1 | LOC106589801 | coding | upstream | 227483 | 34225871 ~ 34271548 (+) |
| zmp:0000000760 | LOC106589800 | coding | upstream | 290045 | 34184080 ~ 34208986 (+) |
| LOC110499368 | LOC106589788 | coding | upstream | 320100 | 33984466 ~ 34178931 (+) |
| klhl31 | LOC106589810 | coding | downstream | 65389 | 34569055 ~ 34573880 (+) |
| gclc | gsh1 | coding | downstream | 79650 | 34583316 ~ 34591320 (+) |
| elovl5 | LOC100192340 | coding | downstream | 91291 | 34594957 ~ 34606103 (+) |
| LOC110499384 | LOC106589811 | coding | downstream | 112034 | 34615700 ~ 34626578 (+) |
| LOC110499387 | gsta3 | coding | downstream | 123553 | 34627219 ~ 34630262 (+) |
| G1687735 | NA | non-coding | upstream | 79744 | 34414763 ~ 34419287 (+) |
| G1687732 | NA | non-coding | upstream | 87309 | 34411521 ~ 34411722 (+) |
| G1687731 | NA | non-coding | upstream | 87621 | 34411190 ~ 34411410 (+) |
| G1687730 | NA | non-coding | upstream | 88009 | 34410818 ~ 34411022 (+) |
| G1687845 | NA | non-coding | downstream | 123052 | 34626718 ~ 34683245 (+) |
| LOC110499597 | NA | non-coding | downstream | 181027 | 34684614 ~ 34685478 (+) |
| G1688405 | NA | non-coding | downstream | 239165 | 34742831 ~ 34743036 (+) |
| G1688410 | NA | non-coding | downstream | 243191 | 34746857 ~ 34747323 (+) |
| G1688414 | NA | non-coding | downstream | 246338 | 34750004 ~ 34750436 (+) |
| G1687675 | NA | other | upstream | 172777 | 34325837 ~ 34326254 (+) |
| LOC118942060 | LOC106589768 | other | upstream | 1313755 | 33177293 ~ 33196167 (+) |
| G1686317 | LOC106589755 | other | upstream | 1837383 | 32654354 ~ 32661648 (+) |
| LOC110499316 | LOC106589729 | other | upstream | 4922473 | 29572397 ~ 29588171 (+) |
| lhcgr | lhr | other | upstream | 5041110 | 29437357 ~ 29458499 (+) |
| LOC110499396 | LOC106589821 | other | downstream | 878043 | 35381609 ~ 35384567 (+) |
| G1689347 | NA | other | downstream | 1177701 | 35681367 ~ 35682437 (+) |
| LOC118942012 | LOC106589797 | other | downstream | 1197554 | 35701200 ~ 35702156 (+) |
| G1689671 | NA | other | downstream | 1377912 | 35881578 ~ 35881874 (+) |
| G1689732 | LOC106612293 | other | downstream | 1616950 | 36120616 ~ 36125390 (+) |
