Gene
RNA
| Item | Value |
|---|---|
| gene id | lrrc1 |
| gene name | LOC106589808 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048584.1 |
| NCBI id | CM023238.2 |
| chromosome length | 46616863 |
| location | 34517238 ~ 34557314 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| leucine-rich repeat-containing protein 1-like isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036956240.1 | False | 2944 | mRNA | 0.42 | 14 | 34517238 | 34546202 |
| XM_021576487.2 | False | 3490 | mRNA | 0.42 | 14 | 34517238 | 34557314 |
| XM_021576489.2 | True | 3393 | mRNA | 0.42 | 15 | 34517238 | 34557314 |
34,490,000
34,500,000
34,510,000
34,520,000
34,530,000
34,540,000
34,550,000
34,560,000
NC_048584.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| mlip | LOC106589807 | coding | downstream | 18274 | 34454563 ~ 34498964 (-) |
| fam83b | LOC106589806 | coding | downstream | 81777 | 34414349 ~ 34435461 (-) |
| hcrtr2 | hcrtr2 | coding | downstream | 110407 | 34390070 ~ 34406831 (-) |
| gfral | LOC106589804 | coding | downstream | 127653 | 34380038 ~ 34389585 (-) |
| trnav-uac-22 | NA | coding | downstream | 384761 | 34132402 ~ 34132477 (-) |
| eloal | LOC106589809 | coding | upstream | 2082 | 34559396 ~ 34568186 (-) |
| fbxo9 | LOC106589812 | coding | upstream | 49841 | 34607155 ~ 34612817 (-) |
| LOC110499388 | LOC106589793 | coding | upstream | 74608 | 34631922 ~ 34634132 (-) |
| LOC110499389 | LOC106589814 | coding | upstream | 78841 | 34636155 ~ 34648964 (-) |
| LOC110499538 | LOC106589816 | coding | upstream | 91960 | 34649274 ~ 34683421 (-) |
| G1688291 | NA | non-coding | downstream | 10032 | 34506991 ~ 34507206 (-) |
| G1688246 | NA | non-coding | downstream | 127421 | 34389608 ~ 34389817 (-) |
| G1688188 | NA | non-coding | downstream | 183089 | 34333847 ~ 34334149 (-) |
| G1688186 | NA | non-coding | downstream | 185147 | 34331880 ~ 34332091 (-) |
| G1688328 | gsh1 | non-coding | upstream | 30837 | 34588151 ~ 34588969 (-) |
| G1688337 | NA | non-coding | upstream | 64727 | 34622041 ~ 34622397 (-) |
| G1688356 | LOC106589817 | non-coding | upstream | 110350 | 34667664 ~ 34668042 (-) |
| G1688355 | NA | non-coding | upstream | 113187 | 34670501 ~ 34671859 (-) |
| G1688389 | NA | non-coding | upstream | 164638 | 34721952 ~ 34741730 (-) |
| G1687007 | LOC106589782 | other | downstream | 973000 | 33531084 ~ 33544238 (-) |
| LOC110499358 | LOC106589782 | other | downstream | 982962 | 33530945 ~ 33535225 (-) |
| G1686887 | NA | other | downstream | 1439211 | 33077810 ~ 33078027 (-) |
| LOC110499342 | LOC106589762 | other | downstream | 1704384 | 32810995 ~ 32812999 (-) |
| G1684920 | NA | other | downstream | 3104394 | 31407594 ~ 31412844 (-) |
| G1689130 | NA | other | upstream | 701675 | 35258989 ~ 35259818 (-) |
| G1689131 | NA | other | upstream | 702572 | 35259886 ~ 35260208 (-) |
| G1689461 | NA | other | upstream | 920800 | 35478114 ~ 35480057 (-) |
| G1689556 | NA | other | upstream | 1086054 | 35643368 ~ 35643777 (-) |
| LOC110499416 | dnah17 | other | upstream | 1308386 | 35864651 ~ 35951415 (-) |
