lrrc1 (LOC106589808)


Basic Information

Item Value
gene id lrrc1
gene name LOC106589808
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 34517238 ~ 34557314 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956240.1
CATCCAGAAGAATGGATGATTACATCAGAGAACTGGCCATTTTTTCAGCTGGTAAAGCTACGAAAGCTGGGCCTGAGTGACAACGAGATCCAGAGGCTTCCTCCAGAGATAGCCAACTTCATGCAGCTGGTAGAACTTGATGTCTCTCGTAATGACATCATAGAAATTCCTGAGACCATTTCTTACTGTAAAGCTCTCCAAGTAGCAGACTTTAGTGGAAACCCATTAACAAGATTGCCTGAGAGTTTTCCAGAGCTCCGGAATTTAACTTGCCTTTCCATCAATGACATTTCGTTGCAGATTCTTCCCGAAAACATTGGAAACCTCTCCAACTTGGTGTCACTGGAACTCAGAGAGAACCTGCTAACGTATTTACCAGAGTCACTATCGCTACTTCACAGACTTGAGGAACTTGACCTGGGGAACAATGAAATTTACAATTTGCCTGAAACAATAGGCTGTCTTGTCAGCTTGAAGAACTTGTGGCTGGACGGAAACCAGTTGGCTGAAATACCTGCAGAGATAGGCAGCATGAAAAGCCTCCTGTGTCTAGATGTATCGGAGAACAAACTGGAGCACCTTCCAGAAGAGATCGGCGGCCTGGTCTCCCTAACTGACCTGCTGGTGTCTCAGAACCTCATCGATGCTCTGCCAGAGGGCATAGGAAAACTAAGGCGACTGTCTATATTGAAAGCAGACCAGAATCGTCTTGCCCAGCTGCCAGAGAGCATTGGCAACTGTGAGAGTCTCACTGAACTGATGCTCACAGAGAATCAGTTACAGAGTGTGCCAAGAAGTATTGGAAAACTAAAGAGACtctccaacttcaactgtgacagaaaCCGATTAGCATCATTACCAAAAGAGATTGGAGGTTGCAGTAGCCTGAATGTCTTCTGTGTACGAGAGAACAGGCTTACAAGGATTCCCTCTGAGATCTCTCAGGCCTCAGAGCTGCATGTGTTTGATGTCTCCGGAAATAGACTGCTCCACCTACCCATTTCTCTGACTGCGCTGCGACTCAAGGCCCTGTGGCTGTCAGAGAACCAGTCGCAGCCTCTGCTCACTTTCCAGAATGACATAGACCCAGAGTCTGGGGAAAAGGTGCTCACCTGTGTTCTCCTGCCCCAGCAGCCTTTAGAACCAGAGAGTAAAGGCTCAGACAACCTTGCTCGCTGTGGTGCTCTGGAGAGCCTGGTGAATGACATGGTGGATGACACCTGGGGCGACAAGGCCATGAAGAGGATCAGTGCCATCCACTTCCTGGATGATGACGATGACGAGGATGATGAAAAGggaAGGCTGATGCGACAAGCCACTCCTCACCCAGGTGAGTTAAAGACTATGAAGAAAGCGGTGGAGAACCTCCGCAACGACCTGAACGCTGCCAAAGCTCTGGATTCCAACAAAAACGTGGTCAATAACACTACAGTCACCACGTCTGTGTGACCTCTACCTCAGAAACATTCTGATCTCCTGTGTCTCTCGCCATGTTCTTCTGTACCACCACCAGAACCTACTTTAATCCCACAAACCCCTCCTGCGGCCTCCCTACCTAGCCCTCCTGCGGCTCAACCCTGGGACTCTGCTGTGATCCTTTTGTCCAGTACCTTACTTCATCTCCAATACACACCATGGTATCTGGCTCAGACTACCAGGGCCCATGTGCCTTCTTTTCAAACTGTTGTGCTATATTTTTTAACATAGCAATAATCTGCACAGGTGTGGTCCTTTTTcaaagacatttgaaaaatgtTGCTTTTTAAAGATTTATTtctacatttctttttaaatggATAATAGGTAGTTGCACTACTGTAAGTCTTTAGTATATTAAATATTGTTGacatattcataaatattatatttgttttattttttagaacactgggtgaatatttttttgttgaaaaTTTCGGGTTACTTGACCAACTGATTTAAGGATTACTGTATAGTCATTTTGTGAATATTGATAATTTTATACTTTTTGGCAGCTCAGATGGTGTAAATTAAAACAATGTATAGCAAGTTTCTTAATCTATGGCAGAATTGTTCTAAACGATATTACTTTGTACGTATTTTATTTCCTTTTAAGTAAAGAAATGAACAAAAATGCAGTTGCTAATGTCTTATCGTAATTGACTTTGGGTGAATAGACGGCCTCGACTCTTTTCTATGCCATTGTTTAACTTCTTAATCAAATCCTAAACAAATTTTGATATAGACATGTTTTGTAATTAAGGGCTAATGCAGTGAGCAACGTGTACCTTAACCACAGCAGATTGAGTGGAAGTGACAGGGCTGTCTTACTTTCTTTTATTGCGCTTCATTGCTTTGAAATGTTTTCTTAAGTAGatacggggcggcaggtagcgtagCGGttaagtgttgggccagtaaccaaagggTTGCTgatttgaatccctgagccgactaaggaacaaaaaaaaacaaaaaaatcggTGACCTTGAGCAAGGCGCTTAACCCTAATTGGTCctctaagtcactctggataagagcatctgctcaatgactaaaatgtaaatacttTATCGGAAACTGCAGAATTTTTCAATGTCTATTTCTCTTTTAACACATGTGCATTGGACTTTCAATGGCCAATTTCATTCCACGCAAAAGGAAATGAGGACCATGGTGGAACCGTTTGGAAAATGCAGTTTAAGCATGAACTCATGCActtagttttttttgtcttaataaAAACAATTTGTTGTTCAAATGGTAAACCATAacaatgattttagttttttgtttgttgtattaccaggagaaacatatacatttgttttatctttatttttaaataattttcTTTAGTTATCAAGCTGCACATAAACACAATCTCAAATAGGCACGGACGCTGAGCCTACAGATTTGGATGCCTTTTACCCACTGATAAAATTAAAGGGGTTTAAAACGAAA
>XM_021576487.2
aaacatttgGCAACAGAATCTGCCGAATGAGTACACCACTGGTCTGAGGGGAAAATAACTCTGGGACAACGAAATCAGTAGGCTACACGAAATAAGATCTAAACAGATATGTTTTCGGGAGCCGATTAGAAAAACTAACATTCCAGAGGCGACGTGAGTAAAGAATAAAAAACCAAGCCTACAAAAGTATTGAATGTGAGAGCGCTAGACACCGTTTTTATTCCATGGTGCCCATTGGTATTTATTTACGCCTGGGGGAGGTGGTTAAGATGTTTGCTTTGGAAATTCGTTCGACCAACTGCAAGAAAGTGTTTGGCAAGCAATCTAGTAGCTAGGTGTCTGTATTCAGTTGCGCCTTCCGTTTCTTTAATTGGACGTCTATTCGGGATATTTGTTAAGAACGGATTTTGCCATCACCCGGTGATGTTTCACTGTATACCTCTGTGGCGGTGCAACCGTCATGTTGAAGTGATCGATAAGCGGCACTGCTCTCTGTTGTACGTCCCGGATGAGATCTACCGCTACAGTCGGAGTTTGGAGGAACTTTTGCTGGACGCTAACCAACTCCGCGACCTGCCCAAGCCATTTTTTCAGCTGGTAAAGCTACGAAAGCTGGGCCTGAGTGACAACGAGATCCAGAGGCTTCCTCCAGAGATAGCCAACTTCATGCAGCTGGTAGAACTTGATGTCTCTCGTAATGACATCATAGAAATTCCTGAGACCATTTCTTACTGTAAAGCTCTCCAAGTAGCAGACTTTAGTGGAAACCCATTAACAAGATTGCCTGAGAGTTTTCCAGAGCTCCGGAATTTAACTTGCCTTTCCATCAATGACATTTCGTTGCAGATTCTTCCCGAAAACATTGGAAACCTCTCCAACTTGGTGTCACTGGAACTCAGAGAGAACCTGCTAACGTATTTACCAGAGTCACTATCGCTACTTCACAGACTTGAGGAACTTGACCTGGGGAACAATGAAATTTACAATTTGCCTGAAACAATAGGCTGTCTTGTCAGCTTGAAGAACTTGTGGCTGGACGGAAACCAGTTGGCTGAAATACCTGCAGAGATAGGCAGCATGAAAAGCCTCCTGTGTCTAGATGTATCGGAGAACAAACTGGAGCACCTTCCAGAAGAGATCGGCGGCCTGGTCTCCCTAACTGACCTGCTGGTGTCTCAGAACCTCATCGATGCTCTGCCAGAGGGCATAGGAAAACTAAGGCGACTGTCTATATTGAAAGCAGACCAGAATCGTCTTGCCCAGCTGCCAGAGAGCATTGGCAACTGTGAGAGTCTCACTGAACTGATGCTCACAGAGAATCAGTTACAGAGTGTGCCAAGAAGTATTGGAAAACTAAAGAGACtctccaacttcaactgtgacagaaaCCGATTAGCATCATTACCAAAAGAGATTGGAGGTTGCAGTAGCCTGAATGTCTTCTGTGTACGAGAGAACAGGCTTACAAGGATTCCCTCTGAGATCTCTCAGGCCTCAGAGCTGCATGTGTTTGATGTCTCCGGAAATAGACTGCTCCACCTACCCATTTCTCTGACTGCGCTGCGACTCAAGGCCCTGTGGCTGTCAGAGAACCAGTCGCAGCCTCTGCTCACTTTCCAGAATGACATAGACCCAGAGTCTGGGGAAAAGGTGCTCACCTGTGTTCTCCTGCCCCAGCAGCCTTTAGAACCAGAGAGTAAAGGCTCAGACAACCTTGCTCGCTGTGGTGCTCTGGAGAGCCTGGTGAATGACATGGTGGATGACACCTGGGGCGACAAGGCCATGAAGAGGATCAGTGCCATCCACTTCCTGGATGATGACGATGACGAGGATGATGAAAAGggaAGGCTGATGCGACAAGCCACTCCTCACCCAGGTGAGTTAAAGACTATGAAGAAAGCGGTGGAGAACCTCCGCAACGACCTGAACGCTGCCAAAGCTCTGGATTCCAACAAAAACGTGGTCAATAACACTACAGTCACCACGTCTGTGTGACCTCTACCTCAGAAACATTCTGATCTCCTGTGTCTCTCGCCATGTTCTTCTGTACCACCACCAGAACCTACTTTAATCCCACAAACCCCTCCTGCGGCCTCCCTACCTAGCCCTCCTGCGGCTCAACCCTGGGACTCTGCTGTGATCCTTTTGTCCAGTACCTTACTTCATCTCCAATACACACCATGGTATCTGGCTCAGACTACCAGGGCCCATGTGCCTTCTTTTCAAACTGTTGTGCTATATTTTTTAACATAGCAATAATCTGCACAGGTGTGGTCCTTTTTcaaagacatttgaaaaatgtTGCTTTTTAAAGATTTATTtctacatttctttttaaatggATAATAGGTAGTTGCACTACTGTAAGTCTTTAGTATATTAAATATTGTTGacatattcataaatattatatttgttttattttttagaacactgggtgaatatttttttgttgaaaaTTTCGGGTTACTTGACCAACTGATTTAAGGATTACTGTATAGTCATTTTGTGAATATTGATAATTTTATACTTTTTGGCAGCTCAGATGGTGTAAATTAAAACAATGTATAGCAAGTTTCTTAATCTATGGCAGAATTGTTCTAAACGATATTACTTTGTACGTATTTTATTTCCTTTTAAGTAAAGAAATGAACAAAAATGCAGTTGCTAATGTCTTATCGTAATTGACTTTGGGTGAATAGACGGCCTCGACTCTTTTCTATGCCATTGTTTAACTTCTTAATCAAATCCTAAACAAATTTTGATATAGACATGTTTTGTAATTAAGGGCTAATGCAGTGAGCAACGTGTACCTTAACCACAGCAGATTGAGTGGAAGTGACAGGGCTGTCTTACTTTCTTTTATTGCGCTTCATTGCTTTGAAATGTTTTCTTAAGTAGatacggggcggcaggtagcgtagCGGttaagtgttgggccagtaaccaaagggTTGCTgatttgaatccctgagccgactaaggaacaaaaaaaaacaaaaaaatcggTGACCTTGAGCAAGGCGCTTAACCCTAATTGGTCctctaagtcactctggataagagcatctgctcaatgactaaaatgtaaatacttTATCGGAAACTGCAGAATTTTTCAATGTCTATTTCTCTTTTAACACATGTGCATTGGACTTTCAATGGCCAATTTCATTCCACGCAAAAGGAAATGAGGACCATGGTGGAACCGTTTGGAAAATGCAGTTTAAGCATGAACTCATGCActtagttttttttgtcttaataaAAACAATTTGTTGTTCAAATGGTAAACCATAacaatgattttagttttttgtttgttgtattaccaggagaaacatatacatttgttttatctttatttttaaataattttcTTTAGTTATCAAGCTGCACATAAACACAATCTCAAATAGGCACGGACGCTGAGCCTACAGATTTGGATGCCTTTTACCCACTGATAAAATTAAAGGGGTTTAAAACGAAA
>XM_021576489.2
aaacatttgGCAACAGAATCTGCCGAATGAGTACACCACTGGTCTGAGGGGAAAATAACTCTGGGACAACGAAATCAGTAGGCTACACGAAATAAGATCTAAACAGATATGTTTTCGGGAGCCGATTAGAAAAACTAACATTCCAGAGGCGACGTGAGTAAAGAATAAAAAACCAAGCCTACAAAAGTATTGAATGTGAGAGCGCTAGACACCGTTTTTATTCCATGGTGCCCATTGGTATTTATTTACGCCTGGGGGAGGTGGTTAAGATGTTTGCTTTGGAAATTCGTTCGACCAACTGCAAGAAAGTGTTTGGCAAGCAATCTAGTAGCTAGGTGTCTGTATTCAGTTGCGCCTTCCGTTTCTTTAATTGGACGTCTATTCGGGATATTTGTTAAGAACGGATTTTGCCATCACCCGGTGATGTTTCACTGTATACCTCTGTGGCGGTGCAACCGTCATGTTGAAGTGATCGATAAGCGGCACTGCTCTCTGTTGTACGTCCCGGATGAGATCTACCGCTACAGTCGGAGTTTGGAGGAACTTTTGCTGGACGCTAACCAACTCCGCGACCTGCCCAAGCCATTTTTTCAGCTGGTAAAGCTACGAAAGCTGGGCCTGAGTGACAACGAGATCCAGAGGCTTCCTCCAGAGATAGCCAACTTCATGCAGCTGGTAGAACTTGATGTCTCTCGTAATGACATCATAGAAATTCCTGAGACCATTTCTTACTGTAAAGCTCTCCAAGTAGCAGACTTTAGTGGAAACCCATTAACAAGATTGCCTGAGAGTTTTCCAGAGCTCCGGAATTTAACTTGCCTTTCCATCAATGACATTTCGTTGCAGATTCTTCCCGAAAACATTGGAAACCTCTCCAACTTGGTGTCACTGGAACTCAGAGAGAACCTGCTAACGTATTTACCAGAGTCACTATCGCTACTTCACAGACTTGAGGAACTTGACCTGGGGAACAATGAAATTTACAATTTGCCTGAAACAATAGGCTGTCTTGTCAGCTTGAAGAACTTGTGGCTGGACGGAAACCAGTTGGCTGAAATACCTGCAGAGATAGGCAGCATGAAAAGCCTCCTGTGTCTAGATGTATCGGAGAACAAACTGGAGCACCTTCCAGAAGAGATCGGCGGCCTGGTCTCCCTAACTGACCTGCTGGTGTCTCAGAACCTCATCGATGCTCTGCCAGAGGGCATAGGAAAACTAAGGCGACTGTCTATATTGAAAGCAGACCAGAATCGTCTTGCCCAGCTGCCAGAGAGCATTGGCAACTGTGAGAGTCTCACTGAACTGATGCTCACAGAGAATCAGTTACAGAGTGTGCCAAGAAGTATTGGAAAACTAAAGAGACtctccaacttcaactgtgacagaaaCCGATTAGCATCATTACCAAAAGAGATTGGAGGTTGCAGTAGCCTGAATGTCTTCTGTGTACGAGAGAACAGGCTTACAAGGATTCCCTCTGAGATCTCTCAGGCCTCAGAGCTGCATGTGTTTGATGTCTCCGGAAATAGACTGCTCCACCTACCCATTTCTCTGACTGCGCTGCGACTCAAGGCCCTGTGGCTGTCAGAGAACCAGTCGCAGCCTCTGCTCACTTTCCAGAATGACATAGACCCAGAGTCTGGGGAAAAGGTGCTCACCTGTGTTCTCCTGCCCCAGCAGCCTTTAGAACCAGAGAGTAAAGGCTCAGACAACCTTGCTCGCTGTGGTGCTCTGGAGAGCCTGGTGAATGACATGGTGGATGACACCTGGGGCGACAAGGCCATGAAGAGGATCAGTGCCATCCACTTCCTGGATGATGACGATGACGAGGATGATGAAAAGggaAGGCTGATGCGACAAGCCACTCCTCACCCAGGTGAGTTAAAGACTATGAAGAAAGCGGTGGAGAACCTCCGCAACGACCTGAACGCTGCCAAAGCTCTGGATTCCAACAAAAACGTGAACCTACTTTAATCCCACAAACCCCTCCTGCGGCCTCCCTACCTAGCCCTCCTGCGGCTCAACCCTGGGACTCTGCTGTGATCCTTTTGTCCAGTACCTTACTTCATCTCCAATACACACCATGGTATCTGGCTCAGACTACCAGGGCCCATGTGCCTTCTTTTCAAACTGTTGTGCTATATTTTTTAACATAGCAATAATCTGCACAGGTGTGGTCCTTTTTcaaagacatttgaaaaatgtTGCTTTTTAAAGATTTATTtctacatttctttttaaatggATAATAGGTAGTTGCACTACTGTAAGTCTTTAGTATATTAAATATTGTTGacatattcataaatattatatttgttttattttttagaacactgggtgaatatttttttgttgaaaaTTTCGGGTTACTTGACCAACTGATTTAAGGATTACTGTATAGTCATTTTGTGAATATTGATAATTTTATACTTTTTGGCAGCTCAGATGGTGTAAATTAAAACAATGTATAGCAAGTTTCTTAATCTATGGCAGAATTGTTCTAAACGATATTACTTTGTACGTATTTTATTTCCTTTTAAGTAAAGAAATGAACAAAAATGCAGTTGCTAATGTCTTATCGTAATTGACTTTGGGTGAATAGACGGCCTCGACTCTTTTCTATGCCATTGTTTAACTTCTTAATCAAATCCTAAACAAATTTTGATATAGACATGTTTTGTAATTAAGGGCTAATGCAGTGAGCAACGTGTACCTTAACCACAGCAGATTGAGTGGAAGTGACAGGGCTGTCTTACTTTCTTTTATTGCGCTTCATTGCTTTGAAATGTTTTCTTAAGTAGatacggggcggcaggtagcgtagCGGttaagtgttgggccagtaaccaaagggTTGCTgatttgaatccctgagccgactaaggaacaaaaaaaaacaaaaaaatcggTGACCTTGAGCAAGGCGCTTAACCCTAATTGGTCctctaagtcactctggataagagcatctgctcaatgactaaaatgtaaatacttTATCGGAAACTGCAGAATTTTTCAATGTCTATTTCTCTTTTAACACATGTGCATTGGACTTTCAATGGCCAATTTCATTCCACGCAAAAGGAAATGAGGACCATGGTGGAACCGTTTGGAAAATGCAGTTTAAGCATGAACTCATGCActtagttttttttgtcttaataaAAACAATTTGTTGTTCAAATGGTAAACCATAacaatgattttagttttttgtttgttgtattaccaggagaaacatatacatttgttttatctttatttttaaataattttcTTTAGTTATCAAGCTGCACATAAACACAATCTCAAATAGGCACGGACGCTGAGCCTACAGATTTGGATGCCTTTTACCCACTGATAAAATTAAAGGGGTTTAAAACGAAA

Function

NR:

description
leucine-rich repeat-containing protein 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956240.1 False 2944 mRNA 0.42 14 34517238 34546202
XM_021576487.2 False 3490 mRNA 0.42 14 34517238 34557314
XM_021576489.2 True 3393 mRNA 0.42 15 34517238 34557314

Neighbor

gene id symbol gene type direction distance location
mlip LOC106589807 coding downstream 18274 34454563 ~ 34498964 (-)
fam83b LOC106589806 coding downstream 81777 34414349 ~ 34435461 (-)
hcrtr2 hcrtr2 coding downstream 110407 34390070 ~ 34406831 (-)
gfral LOC106589804 coding downstream 127653 34380038 ~ 34389585 (-)
trnav-uac-22 NA coding downstream 384761 34132402 ~ 34132477 (-)
eloal LOC106589809 coding upstream 2082 34559396 ~ 34568186 (-)
fbxo9 LOC106589812 coding upstream 49841 34607155 ~ 34612817 (-)
LOC110499388 LOC106589793 coding upstream 74608 34631922 ~ 34634132 (-)
LOC110499389 LOC106589814 coding upstream 78841 34636155 ~ 34648964 (-)
LOC110499538 LOC106589816 coding upstream 91960 34649274 ~ 34683421 (-)
G1688291 NA non-coding downstream 10032 34506991 ~ 34507206 (-)
G1688246 NA non-coding downstream 127421 34389608 ~ 34389817 (-)
G1688188 NA non-coding downstream 183089 34333847 ~ 34334149 (-)
G1688186 NA non-coding downstream 185147 34331880 ~ 34332091 (-)
G1688328 gsh1 non-coding upstream 30837 34588151 ~ 34588969 (-)
G1688337 NA non-coding upstream 64727 34622041 ~ 34622397 (-)
G1688356 LOC106589817 non-coding upstream 110350 34667664 ~ 34668042 (-)
G1688355 NA non-coding upstream 113187 34670501 ~ 34671859 (-)
G1688389 NA non-coding upstream 164638 34721952 ~ 34741730 (-)
G1687007 LOC106589782 other downstream 973000 33531084 ~ 33544238 (-)
LOC110499358 LOC106589782 other downstream 982962 33530945 ~ 33535225 (-)
G1686887 NA other downstream 1439211 33077810 ~ 33078027 (-)
LOC110499342 LOC106589762 other downstream 1704384 32810995 ~ 32812999 (-)
G1684920 NA other downstream 3104394 31407594 ~ 31412844 (-)
G1689130 NA other upstream 701675 35258989 ~ 35259818 (-)
G1689131 NA other upstream 702572 35259886 ~ 35260208 (-)
G1689461 NA other upstream 920800 35478114 ~ 35480057 (-)
G1689556 NA other upstream 1086054 35643368 ~ 35643777 (-)
LOC110499416 dnah17 other upstream 1308386 35864651 ~ 35951415 (-)

Expression


Co-expression Network