LOC110499388 (LOC106589793)


Basic Information

Item Value
gene id LOC110499388
gene name LOC106589793
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 34631922 ~ 34634132 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576504.2
GGTACCCGGGTGTGTGAAGATTTAACCTAAGCACCAATGGAATGGTCGCAGATGTACTATCTCCACTCATCCTGGACACCGGGGCATGCAAAACGAACAAACCCATTGGGACAACAGGCGTACATTTTTACTCATTTATTTTACGTTTAAATTAGCAAATACCAGCACTGCAATGGCAATTGACTGGCTTGGATTTGGGTACGCTGCAGCCATAGTCCTTGGGGGATTCATGGGATACAAGAAAAAAGGTAGTGTCATGTCACTGATAGCTGGGCTATTGTTTGGCAGCATAGCCGCCTATGGGGCCTTTGTGATTTCAAATGACCCAACCAAGACTTTCTACTCCCTCGtTGCCTCAGGAGCGCTGACAATAGTAATGGGAATGAGATTCAAGAAATCTGGTAAAATAATGCCAGGTGGTATCATGGCAGGACTAAGTGTGCTGATGGTCCTACGACTTCTCTTCATGAGTGTGATTGTAATGTGATTTGAACAATACAACAACCAACTGAAGCAAGATGGAAAATGTCATCACAAGGGATGAATTTGCATTTACACATTGTTTGTGCTTGCCTATATGCATTATTGTAATCATCCTTAATGTTTGTACGTTCTTTAAAGAACTTGATCCTGCAACCTATGATCATATTGCTGCTTTTATGTAATTCCTCAAGTATGCAGCACTGGGGCAGTGAGTGCACATAC

Function

NR:

description
transmembrane protein 14A-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576504.2 True 705 mRNA 0.43 5 34631922 34634132

Neighbor

gene id symbol gene type direction distance location
fbxo9 LOC106589812 coding downstream 19105 34607155 ~ 34612817 (-)
eloal LOC106589809 coding downstream 63736 34559396 ~ 34568186 (-)
lrrc1 LOC106589808 coding downstream 74608 34517238 ~ 34557314 (-)
mlip LOC106589807 coding downstream 132958 34454563 ~ 34498964 (-)
fam83b LOC106589806 coding downstream 196461 34414349 ~ 34435461 (-)
LOC110499389 LOC106589814 coding upstream 2023 34636155 ~ 34648964 (-)
LOC110499538 LOC106589816 coding upstream 15142 34649274 ~ 34683421 (-)
LOC110499392 LOC106589818 coding upstream 639082 35273214 ~ 35310189 (-)
LOC110499397 LOC106589822 coding upstream 753717 35387849 ~ 35405611 (-)
LOC110499399 LOC106589794 coding upstream 794993 35429125 ~ 35432450 (-)
G1688215 NA non-coding downstream 4906 34553454 ~ 34627016 (-)
G1688337 NA non-coding downstream 9525 34622041 ~ 34622397 (-)
G1688328 gsh1 non-coding downstream 42953 34588151 ~ 34588969 (-)
G1688291 NA non-coding downstream 124716 34506991 ~ 34507206 (-)
hcrtr2 hcrtr2 non-coding downstream 241375 34390070 ~ 34406831 (-)
G1688356 LOC106589817 non-coding upstream 33532 34667664 ~ 34668042 (-)
G1688355 NA non-coding upstream 36369 34670501 ~ 34671859 (-)
G1688389 NA non-coding upstream 87820 34721952 ~ 34741730 (-)
G1688423 NA non-coding upstream 121373 34755505 ~ 34756231 (-)
G1688801 NA non-coding upstream 244025 34878157 ~ 34879035 (-)
G1687007 LOC106589782 other downstream 1087684 33531084 ~ 33544238 (-)
LOC110499358 LOC106589782 other downstream 1097646 33530945 ~ 33535225 (-)
G1686887 NA other downstream 1553895 33077810 ~ 33078027 (-)
LOC110499342 LOC106589762 other downstream 1819068 32810995 ~ 32812999 (-)
G1684920 NA other downstream 3219078 31407594 ~ 31412844 (-)
G1689130 NA other upstream 624857 35258989 ~ 35259818 (-)
G1689131 NA other upstream 625754 35259886 ~ 35260208 (-)
G1689461 NA other upstream 843982 35478114 ~ 35480057 (-)
G1689556 NA other upstream 1009236 35643368 ~ 35643777 (-)
LOC110499416 dnah17 other upstream 1231568 35864651 ~ 35951415 (-)

Expression


Co-expression Network