LOC110499390 (LOC106589817)


Basic Information

Item Value
gene id LOC110499390
gene name LOC106589817
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 34656043 ~ 34671430 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576506.2
GGCTGGGGGCTTAATGAAAAAGGGGAAGCGTGCAGTCTAGGACTGGGAACCTGCAGGAATGACACCATCTACCCGGTATACCCGCTGACCGTATCCCCTCCTCCTGCCTATAAAAGAACCTGAAGAATTGAAAGAGGACTGTGTGCATTTGGATATTCCAGAGGAAAGAATTACAACAATACTTCCCTTCTAAAAACAAATCCATTGAAAAGGCAGTGAGTGACCCAAAAGGAGAATTTTGGATAACAatacacatttttgttttaattcTTAAAATGTTTTATGTTGGCTTACTGGTCTTGAGTAGCTGCTTGGCCCTGGGGACTGGCTACAGGAAAACTACAGACACGACAGCTGTTAAGAGACAATACCAGATCCAGAATGGCCCGTGCAGTTACACCTTTCTGCTGCCTGAGCAGGACAACTGCAGGACCCCTAGCAGCACCTACACCAACCTGGTCCAGAAGGACGACCCGGCAGAGTATGACGAGTCTTCCCAGAGGCTGGAGCAGCTGGAGAACATCATGGAGAACAACACGCAGTGGCTCCTCAAGCTGGAGAACTATATCCAGGAAAGCATGAAGCAGGAGATGGCCCAGATCCAGCAGAATGCTGTCCACAACCACACCGCAGCCATGATAGAGATTGGGGCTAACTTGCTGAGTCAGACCACTGAGCAAACACGGAAACTGACCAACGTAGAGGCGCAGGTAATAAATAATACAACTCGGCTCGAACGTCAGCTTCTTGAGAACTTTCTGTCAACGAATAAGTTGGAAAAACAGCTCATTTTCCAAATAAATGAAATAAGCAAGCTGAATGACAAAAACAGCTACCTGGAGAAGAGGGTGGGGGAGATGGAGGTGcagatgcaggtagagctggagcagctgaaggagaagaaggagcagCTCTCTACACTTGTACGGAGACAGACTGCCGTCATCGAGGAGCTGGAGAAACAGCTTCTCCGGGCCACCATCAACAGCTCTGCCCTGCAGCGGCAGCAACAGGAGCTACTGGAGACCGTCAACAACCTAATCTACACCATCTCCGTCCCTGCAGTGAACAAGCCTACCATGATGCAGGATACACCGACCACATACCCAGACTGTGCTGCACTCTACAAGTCGGGGAACACAGACAGTGGAGTCTACTCACTGGCCCTTCCCAACACTACACAGGAGATTAAGGCTTACTGTGACatggagatggaggggggaggatggaCAGTACTACAAAAACGATTTGATGGTCATGTTGACTTTCACCGTACGTGGAAAGAGTACAAAATGGGCTTTGGAAAGCCTTCAGGTGAATACTGGTTGGGAAATGAATTTGTTTCGATACTGACCAATCAGCAACCATACGTTTTGAGAATACAGATGATGGATTGGGAGGATAACTCAGGATTCTCACTATATGACCAGTTCTCTCTCGGCAGTGAAGCAGAAAACTACAGGATACACCTTAAAGGCTACAGTGGAACAGCAGGCAAAATTAGTAGCCTTGGTCAACCAGGAAGTGATTTCAGCACAAAAGATGCCGACAATGACAGATGTGTTTGCAAATGCTCACAACTGACAACAGGAGGCTGGTGGTTTGACGCCTGCGGCCCCTCTAACTTGAACGGAATATTTTTCCAGCACGGCCAGAACTCTAATCGATTCAATGGAATCAAATGGTACTACTGGAAGGGCTCAGGCTACTCACTGAAGTCTACCACAATGATGATCAGACCAGTAGACTTCTGAGGCTGCCCCAGAGACATGCCTCTCACAGACGGACATAGAAAGGAGAGCATTGTCACTCTGGGAAACTACAGACAAGACAGACTGAACTGCTCTATAACAGCAACCTCACCACTTCCAAGCATTCCACAAGGAAGGGAACAAATTAACTCGCTCCAACATGTCAGCAAAGAGTTTACTGTTTTGTACAAAATTGACAGGTGGTAACGAGCAGAAGTCTATGAACTGTGTATTTTTAGAAACATATGGGCTTTGGACTGCATAACCAACCGGGACAAGGCAGTCAAAGGATGAAATAGATATTTATAGCTAACTGGAACTGTGGTAGAGATAACAGTATTGTTTTCTATAACAAGCAATACCAGGGGAAATGTTAGTGTGTGACACAATGCAAGGTTGACCAAGTACATTCTGTAATAACGATATTTCACCCCATTACATTTGATACAATGAATTTGAAAATGGTTACATTTATTTATATTAAAATTTTTAAAAATAGGCCTAATACTAAAAGCAAAGAAAACTAGGGTACAAATACACGATCAAATATGAACATAATGCGCTACGGTCAGTAATGAATCTACTGGTTTTCTTTCTTAGAGCTTGTACATACTTACATGatttaatttaaaatgtataGAAGGTTcacaaaatgtattaaaatcaGATGTGATAACTTTGATTGGGATGTTACTCAAAACATGTAATCAATGTCAAAATTAACCTAATTATGCACTTGTGTGAATCTATTGCAAGTGTGTTCAACTTTTTCCATGATTACACAATTGACTGAGAAATTAAACTTCCACATCCTTTGCCTGACTTAGGCTACGTA

Function

NR:

description
angiopoietin-2-like

GO: NA

KEGG:

id description
K05466 ANGPT2; angiopoietin 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576506.2 True 2586 mRNA 0.44 9 34656043 34671430

Neighbor

gene id symbol gene type direction distance location
LOC110499387 gsta3 coding upstream 25781 34627219 ~ 34630262 (+)
LOC110499384 LOC106589811 coding upstream 29465 34615700 ~ 34626578 (+)
elovl5 LOC100192340 coding upstream 49940 34594957 ~ 34606103 (+)
gclc gsh1 coding upstream 64723 34583316 ~ 34591320 (+)
klhl31 LOC106589810 coding upstream 82163 34569055 ~ 34573880 (+)
LOC110499597 NA coding downstream 13184 34684614 ~ 34685478 (+)
LOC110499391 LOC106589815 coding downstream 95339 34766769 ~ 35179392 (+)
LOC110499393 LOC106589819 coding downstream 641181 35312611 ~ 35323282 (+)
LOC110499394 LOC106589820 coding downstream 667019 35338449 ~ 35374027 (+)
LOC110499396 LOC106589821 coding downstream 710179 35381609 ~ 35384567 (+)
G1687735 NA non-coding upstream 236756 34414763 ~ 34419287 (+)
G1687732 NA non-coding upstream 244321 34411521 ~ 34411722 (+)
G1687731 NA non-coding upstream 244633 34411190 ~ 34411410 (+)
G1687730 NA non-coding upstream 245021 34410818 ~ 34411022 (+)
hmgcll1 LOC106589805 non-coding upstream 301287 34347154 ~ 34379366 (+)
G1688405 NA non-coding downstream 71401 34742831 ~ 34743036 (+)
G1688410 NA non-coding downstream 75427 34746857 ~ 34747323 (+)
G1688414 NA non-coding downstream 78574 34750004 ~ 34750436 (+)
G1688418 NA non-coding downstream 81012 34752442 ~ 34752902 (+)
G1687675 NA other upstream 329789 34325837 ~ 34326254 (+)
LOC118942060 LOC106589768 other upstream 1470767 33177293 ~ 33196167 (+)
G1686317 LOC106589755 other upstream 1994395 32654354 ~ 32661648 (+)
LOC110499316 LOC106589729 other upstream 5079485 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 5198122 29437357 ~ 29458499 (+)
G1689347 NA other downstream 1009937 35681367 ~ 35682437 (+)
LOC118942012 LOC106589797 other downstream 1029790 35701200 ~ 35702156 (+)
G1689671 NA other downstream 1210148 35881578 ~ 35881874 (+)
G1689732 LOC106612293 other downstream 1449186 36120616 ~ 36125390 (+)

Expression


Co-expression Network