LOC110499394 (LOC106589820)


Basic Information

Item Value
gene id LOC110499394
gene name LOC106589820
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 35338449 ~ 35374027 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576514.2
AGAGATAGCGGCGGGTGCTGAGGATACTCGCCAGAATCACTGCTGCTTGGATGCCACTGTCAAATCAAAGCTTTGCGCGGTAGTAAGGAAGGACAGACACTGCGGCGGTGTCAACGGTGACCAAATCGCAAAGGTTTTCCTGGTGGCTGTTTATCTGCCGTATAGGAAGTATGGATTAGAAGTGACTAGGAGGACGCTAAATCCCCTGTGTTGTTTACTGATCTATAGTTATTGAGCAAATATAAACTGCCAGTGCTGATCTGAAATGCAGATCTGAAGCAGGGCGCAATGGACACGAACATGCGGAAATTTACAGTTAGGAGATGGTTTTCCGTCTACCTTCGGAAGAAGTCACGGTCCAAAAGCTCGAACCTCTGCAGATTGGAGGATGATGGCATTCTGAAAGAGATTGACATCAGCCAGCACACCAAAGAGGGATTTGAAAAGGCAGACCCCTCCCAGTTTGAGCTGCTGAAAGTGCTAGGCCAAGGCTCCTATGGAAAGGTGTTCCTGGTGAGAAAAATCAGAGGCTCTGACAGAGGACAGCTTTATGCCATGAAAGTGTTAAGGAAAGCAACACTAAAAGTCCGGGATCGGGTGCGGTCCAAAATGGAGAGAGATATTCTGGCTGAAGTCAATCACCCGTTCATAGTCAAACTCCATTACGCCTTTCAGACGGAAGGGAAGTTGTATCTGATTCTAGACTTCCTCCGAGGGGGAGACCTCTTCACACGGCTTTCCAAAgagGTGATGTTTACTGAAGAGGATGTGAAGTTCTATCTGGCTGAGCTGGCCTTGGCCTTAGATCACCTTCACAGTCTGGGCATCATCTACAGAGACCTCAAACCAGAGAATATCCTTCTTGACGAGGAGGGCCACATCAAGATTACAGATTTCGGGCTGAGTAAAGAGGCAACAGACCATGACAAGCGAGCGTACTCCTTCTGCGGGACGATAGAGTACATGGCCCCTGAGGTGGTCAACAGAAGAGGACATACACAGAGTGCTGACTGGTGGTCATTTGGCGTCTTAATGTTTGAAATGCTGACAGGATCTCTACCATTTCAAGGCAAAGACCGCAAGGAAACAATGGTCCTGATACTGAAGGCAAAACTTGGCATGCCGCAATTCTTAAGCCCAGAGGTGCAAAGTCTAATACGGGCCCTCTTCAAAAGAAATCCTGCCAATAGATTAGGTGCTGGACCAGATGGAGTCGAGGAGATTAAAAGGCATCATTTCTTTGGAAATATAGATTGGAATAAGCTTTACAGAAGAGAGATCAAGCCTCCATTCAAACCAGCAGTGGGCAGGCCAGAAGACACCTTCCACTTTGACCCCGAATTCACCTCCCGCACACCAACAGACTCGCCTGGCATCCCTCCCAGTGACAACACACACCAGCTCTTCAGAGGGTTCAGCTTCGTGGCCACTAATCTGGACCAGGACCAGTCCATTGCTGAAATACAGCAGAACTCAACCGTCAACCCTATTGTACAACAACTTCATGGGACCAACATCCATTTCACAGATGGGTATGAGGTAAAGGAGGAGGTGGGCTTGGGGGCGTACTCTGTCTGCAAACGATGCATCCACAAAATCACCAGTGTTGAATATGCTGTCAAAATCATCGACAGAGTGAAGAAAGATCCATCTGAGGAAATTGAGATTCTGTTGAGATACGGGCAGCATCCAAACATCATCACGCTGAAGGATGTCTATGACGATGGGAGGTATGTGTACCTTGTGATGGAGCTGATGAGAGGTGGGGAGCTGCTGGACAGAATACTCTATCAGAAGTGTTTCTCTGAGCGAGAAGCCTCTGCTCTTCTCTGCACTATTACCAAGACAGTGGAGTACCTTCACTCACAGGGGGTGGTACATCGAGACCTGAAACCAAGCAACCTCCTCTATGTGGATGAAACGGGAGATCCTGAATCGATCCGAATATGTGATTTTGGGTTCGCCAAACAATTAAGGGCAGAAAACGGTCTCCTCATGACGCCCTGTTACACAGCAAACTTTGTGGCTCCAGAGGTCCTGAAGAAGCAGGGGTATGATGCTGCTTGTGACATCTGGAGTTTGGGGATCCTACTCTACACTATGCTCGCAGGCTTCACCCCTTTTGCCAATGGTCCTGATGACACCCCGGAGGAAATACTGGCTCGCATTGGTAGCGGAAAATATGCCCTCACCGACGGAAACTGGGATACAGTTTCTGATGCTGCAAAGGACATAGTCACTAAGATGCTCCATGTGGATCCACACCAACGGCTGACGGCTCCCCAGGTCCTCAGACACCAGTGGATAGTCAACCAAGAACAGCTGTCTCAGTGTCAGCTCATCAGACAGGATGTACAGCTTGTTAAGGGAGCAATGGCTGCAACATACTTGGCGTTGAATCGATCGCCTCTGGCCCCAAAGCTGGAGCCTGTGCAGTGTTCAAGTTTGGCCcagagaagaggaatgaagagacTCACATCCACTTGTTTATAGCACCCTCATAGATGATTCAGGGACAGCTTGAAAATGGGTCAAGGTGCAATGACTTTCATCAGACACTGGTATAAGTGCCTGTCCAAAGAACCAGGAAGTCTACAGTAGTGGGAACAAGGAGGAGCCACTTGTAACaagaaaaaaaaatggtagaGAAGATGCATCACATTGTTGCACTAAGACAGGAATCTTTACAGATTTTAGATGCACTCAAAACAAACAAATGGTGGCTTCGAAGACCAAGCAGAATTCTGTTCAAATCTTCTTAAATGTATCATTTGTATTGAAGAAATGTAACATTAATATATTTTATTCATTCATATTTGCCTTTTCATTTAGGTGGCATCTGAAACTGTTTGTTTGTGAATTGACACCTGTGTATTATGTAGAGTATGTTTAGAATGATATTGTCTAGGAGACCAAGTCACCTTATGCAACGTTGAGTTGACACTTTGTCATAATCGCTGTAACAGAAAAGTCTAGAACAGCTTGTAGTTCATAACTACACGATACAAATTTTACGAGATTTTATCGACAGCATCTGTATTTTTCCctgtgtctgaaaataagcatgTTGGAATGTTACTTTGCTGACACATTGTCCATAGTCTAAAAGTTAAATTACAGCTGCGAAGGATATGTTGGTACATTTTGTAGCATTCCAGAAATCCACAGTTAGTATAGACattaaaataaactgaaatagcTGAATGAGTACAaggagtatacagtgcattcagaaagtattcagacccttgactttttccagattttgttacgttacagccttatctaaaatggattaaataaattaaacatcctcatcaatcta

Function

NR:

description
ribosomal protein S6 kinase alpha-2 isoform X1

GO: NA

KEGG:

id description
K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576514.2 True 3325 mRNA 0.45 21 35338449 35374027

Neighbor

gene id symbol gene type direction distance location
LOC110499393 LOC106589819 coding upstream 15167 35312611 ~ 35323282 (+)
LOC110499391 LOC106589815 coding upstream 159057 34766769 ~ 35179392 (+)
LOC110499597 NA coding upstream 652971 34684614 ~ 34685478 (+)
LOC110499390 LOC106589817 coding upstream 667019 34656043 ~ 34671430 (+)
LOC110499387 gsta3 coding upstream 708187 34627219 ~ 34630262 (+)
LOC110499396 LOC106589821 coding downstream 7582 35381609 ~ 35384567 (+)
LOC110499398 m4a15 coding downstream 36212 35410239 ~ 35417932 (+)
LOC110499400 LOC100194728 coding downstream 64953 35438980 ~ 35446541 (+)
kifbp kif1bp coding downstream 91608 35465635 ~ 35468940 (+)
LOC110499404 srgn coding downstream 99593 35473620 ~ 35479099 (+)
G1689192 NA non-coding upstream 7561 35330614 ~ 35330888 (+)
G1689183 NA non-coding upstream 29515 35307182 ~ 35308934 (+)
G1689152 NA non-coding upstream 65960 35272246 ~ 35272489 (+)
G1689132 NA non-coding upstream 77508 35260714 ~ 35260941 (+)
G1689124 NA non-coding upstream 83201 35254999 ~ 35255248 (+)
G1689174 NA non-coding downstream 1573 35375600 ~ 35378074 (+)
G1689214 NA non-coding downstream 12238 35386265 ~ 35386597 (+)
G1689215 NA non-coding downstream 13509 35387536 ~ 35387836 (+)
G1689229 NA non-coding downstream 26677 35400704 ~ 35405614 (+)
G1687675 NA other upstream 1012195 34325837 ~ 34326254 (+)
LOC118942060 LOC106589768 other upstream 2153173 33177293 ~ 33196167 (+)
G1686317 LOC106589755 other upstream 2676801 32654354 ~ 32661648 (+)
LOC110499316 LOC106589729 other upstream 5761891 29572397 ~ 29588171 (+)
lhcgr lhr other upstream 5880528 29437357 ~ 29458499 (+)
G1689347 NA other downstream 307340 35681367 ~ 35682437 (+)
LOC118942012 LOC106589797 other downstream 327193 35701200 ~ 35702156 (+)
G1689671 NA other downstream 507551 35881578 ~ 35881874 (+)
G1689732 LOC106612293 other downstream 746589 36120616 ~ 36125390 (+)

Expression


Co-expression Network