LOC110499399 (LOC106589794)


Basic Information

Item Value
gene id LOC110499399
gene name LOC106589794
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 35429125 ~ 35432450 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576524.2
ATCAAAAGCGTGTGATTCTTTTCCGAATGAAAGCGCACGTAGACACCGGCAGCGGAGTATATACACGGATACTTTAGTTTTCACTTTTGCAAGGATTCTATGCACTTATTTAAGAAGAGTGCGTTCACGATGAATGTGGGAACATATCCTTTAGGGGTCAGCACCCATGCTGTGGCCCTACTGAGGAAGTTAAATTTTCAGAGAATGGAGGGGCAATTTTGTGACTGTGTGATTCGACAACATCTGAACCCGGTGAAACTCTATCTGGCCCACAAAAATGTCCTGTCAGCTTCTAGTCCCGTCTTGGCTTCCCTTCTCCCCAGTAAAGGTGCACTGCTGGACTTGCAGTTTCCATCCCTTTCAACTGAAATTCTGGGGTCTCTTTTGGAATTTATCTACACTGGGACACTACCCCCACCAGATCAGGATGAATCTATTCTCTCTGCTGCTACTTATCTGAAAATGGATGAACTACAGAAGGCTTTAATAAGAAGGAGCACACTGAACACATCATCTGAGTCTGACTGCACTGTTGCAGATATAAAACCCAATCTAAAGAGGAAATGCTCAGATCAGCAGCAAAACAAGAAGAATGAACATTCTCCACCGCAGTGTAGCTCAACCCCTCTAAGTTGTGAAGTCGTCCCCGTCATATGCCATGTCAGCACAACTGGAAAGCCTTCTCTATTGTCAGAATCCAGACCTGAAAGCAGAAAATTGAACAGTGAGTCTGACGTGACCATAAAGGAAGCAGGAGGCAGTGAACGAAAGGTGACACTTGGTCATGGACACAATTTAAAGCACTATGGATTACAAACGGATGATAATTATGAGGCAGCTTTATATGAGTCACAACCAAAACAAAGCAAGATTTTATCTGGCAGTGCATGCTCCAATGTCCAGGATCTGCCCATGGCTGCCCCAGAGGATGCAGCATATTACACAGGAAGGCATCAAAGGGAGTTGGATGAAAAATCTGTATTACAAAGTTCTGGGAATGCCATCCTGACACATACTGCTGTATGTTCAGAAATTGGTGAGGAGGATGATACTGAAAAAAACACAAATCAGGAATTTACATCTCACTTCAATACTTCAAGTCATTACTCCAGGATTCAAAGTTGTCCTCACTTAGATACAACTTCCAAATGTAGTGATAACGAAGGGGTAACTACAATAGATCAGTTAGAGTCAAACAAAGAGAAAGGTtctaaatgccaccccacacggCAATTTGAAAATATTTCAGATGCTGATGAGTACATCCCTGATAATGCCATAGAAAACACCCCTAAGGGTAAATTAAAGGATTTATGGAGTTCAATGATCACCAGTGGATATTGTCCCCAGGACGACGAAACAAAATGCTTTCAGAGTGCTTCTAGATTAAATCTATGGACTGAGGCAACGAGCTACTCTACACTAAACCCCAAAATATCTGAGGAGGTAACCTCAAACGAGAGCAGATGTGATATCAAGGGCAGTAACACTAACACCAACGAAATGGAAACATATCAAGGACAAGTTCGCTATCACTATCTTGCAAGGGAAAAACATCACCCTGTACAATCAAGTGACTCGGACGACGATGGTCTGTATAGTGCCATGGCTAACTCTGACCTCCGAGGAGGCCTTGGCATAAATGTCAAAGCCAGCACCTCAGATTTTGTTTTACTGGACATTTCAGCCAAACATCCTTTGGCAGGGTACCCTGACTCCAATGGGAGTGTGGGTGTGCCTGCATCTGCCTCTGTCCAGCCTTACCAGTGCACTATGTGTGATAGGGCCTTCAGCCAGCGAGGCTCCCTCAACAGACACATGCGCTCCCACCTGGGAGTTAGGCCCTACTCATGCCCCCAGTGTCCCATGACCTTCTCCAGACAGTACCGGGTCACTGAGCACATGCGTGTCCACCAACGGGGCTGCGAGGACCTTCAGAGGACAGGCCCCACCTGATGGCAACAACAATCAAAGCAATGGAGCTTCAGCTGAAAATCCTACACAACTTTGGAATTAGGTCAGGGCTACGGCTTGTTCAACCCTATCAAGATCAGTTTGTGAGATAGAGTTGATCAGGGTTCAAGCCACTTGTGAACTGTATCCAAAAACCTTTGGGAAAGCGCTTTTGGTATGATAGTCTGTGCTACCAGCCATTTGATGAAAAGGAAATGCTTTCAGATGTTCTCTGTCACTTCAAAAACAATTTGAGAAAGCACCTTTTGGCATTAGTTTGTCAtttgatgaagtgaaaatgaatcaTCAAGATGGATTTGTCTTATACCCTATTTCAAGTGGCCTTATATTCATGGGTTGCACATTTcgtcacaatattgttttgaacgTTAGTTTTAGATCAGATGCCCAGCTGAACATTCTACTCAATGCAGTCTCAATGGGTGTTGAGAAAGATTTTGTCTAAAGTGCATTACATTGGCTTGGAAACATGACATTTCAAAAGGAGGCAAATAATTAGCAGGGCAGACCTTTGTCATCATTGTGATGTCTTCAGATTGACtttagatacagtataactttaggtagctagctaagattgaggggagAGCACTGACATtctagccagctaacattagcattgctagctacagtgccttcagaaagt

Function

NR:

description
myoneurin-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576524.2 True 2620 mRNA 0.44 3 35429125 35432450

Neighbor

gene id symbol gene type direction distance location
LOC110499397 LOC106589822 coding downstream 23514 35387849 ~ 35405611 (-)
LOC110499392 LOC106589818 coding downstream 118936 35273214 ~ 35310189 (-)
LOC110499538 LOC106589816 coding downstream 745704 34649274 ~ 34683421 (-)
LOC110499389 LOC106589814 coding downstream 780161 34636155 ~ 34648964 (-)
LOC110499388 LOC106589793 coding downstream 794993 34631922 ~ 34634132 (-)
LOC110499402 LOC106589795 coding upstream 14361 35446811 ~ 35459745 (-)
LOC110499408 LOC106589827 coding upstream 128800 35561250 ~ 35567621 (-)
LOC110499415 LOC106589833 coding upstream 386579 35819029 ~ 35826024 (-)
LOC110499416 dnah17 coding upstream 432201 35864651 ~ 35951415 (-)
LOC110499419 LOC106589836 coding upstream 519123 35951573 ~ 35985223 (-)
G1689443 NA non-coding downstream 2686 35426216 ~ 35426439 (-)
G1689442 NA non-coding downstream 3787 35425107 ~ 35425338 (-)
G1689439 NA non-coding downstream 20414 35408370 ~ 35408711 (-)
G1689415 NA non-coding downstream 41850 35385035 ~ 35387275 (-)
G1689416 NA non-coding downstream 46142 35381700 ~ 35382983 (-)
G1689414 NA non-coding upstream 6796 35439246 ~ 35441644 (-)
G1689473 NA non-coding upstream 59465 35491915 ~ 35493696 (-)
G1689511 NA non-coding upstream 131150 35563600 ~ 35563891 (-)
G1689546 NA non-coding upstream 175113 35607563 ~ 35608098 (-)
G1689536 rufy2 non-coding upstream 202346 35634796 ~ 35636597 (-)
G1689131 NA other downstream 168917 35259886 ~ 35260208 (-)
G1689130 NA other downstream 169307 35258989 ~ 35259818 (-)
G1687007 LOC106589782 other downstream 1884887 33531084 ~ 33544238 (-)
LOC110499358 LOC106589782 other downstream 1894849 33530945 ~ 33535225 (-)
G1686887 NA other downstream 2351098 33077810 ~ 33078027 (-)
G1689461 NA other upstream 45664 35478114 ~ 35480057 (-)
G1689556 NA other upstream 210918 35643368 ~ 35643777 (-)
LOC110499427 LOC106612293 other upstream 688057 36120507 ~ 36125437 (-)
G1690367 NA other upstream 987266 36418789 ~ 36420600 (-)

Expression


Co-expression Network