LOC110499400 (LOC100194728)


Basic Information

Item Value
gene id LOC110499400
gene name LOC100194728
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 35438980 ~ 35446541 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576525.2
ATATAGGTATATTGTGTACATAATTTTCATAAAACTATCATATGTCAGCACAGATTAGATGAACATTGTTATGAATGGAGTACAAACGCGCATAAAACAACTAAGAAGAAGACACACATATTTGTAAGCTAAAGAACCAACCTAAAGTTCCACATCACGGCGTCTAAATTGCTCTGTACTGACTTCCAATGAGAGGGCCGTTCTACCTACTCAATTTCTATGCTTGTTAAAGCTCTAGCGCAACACCACACAGTCGTGTCGTTCTTTCTGTACGCGTGCCGGTAGGGTTAGCCTGTGTCCACTCTAAGGGAAAACAACCGGGGAAGATGCCGTCAAAGATTATTTTTGAAACCGAAGACATCGGGATGGAAGGTGAAATGGACATTAGTGCGGGCAGTACGACACCCAAAAAAATAAAGGAGAAGAAGACCAAGGAGGGAAAGAAAATCAAGAAACAGAAAACGGTTGTTGAAGAGGAACCTGACTGTGAACCTCCTGCtcccaagaagaagaagaagaagaataaggAAAAAGAGGACAAAACTAACGGGGGCGCAGAAGTTGATGTTAACAGCAACGCAGAAGAATCGCCTTTGAAGGACAACACATCTCATTCCAATGAGGAGTCTGCAGACAATGACAAAGCAACTGAGaagaagaagaagaagaagaaaaaggaaaaaaaGACAGATGAAAAGATCATCGTCAACGGAGTGTTGCCTGAGACTCCCACGCTGATTGCACAAACTAATGGGCATACCGCGGCGATAACTCCAGCACAATCAAGCGAGGACTCCGACAGTGGAAAAGAAACCGAGACGCCAGAACAGAAAGAGGGAGCCTTCTCTAACTTCCGAATCTCCCCCAACACCATTAAACTACTTCAAGCAAGAGGCATATCTTACCTCTTTGACATCCAAACACAAACCTTCAATTCTGTGTACGAGGGAAAGGATGTGATTGGCCAGGCAAGAACAGGCACTGGGAAAACTTTAGCTTTTGCCATTCCGCTGATTGAGAAACTCCAAAATGACCCAGATGACAAGAAGAGGGGCAGAGCCCCAAAGATTTTGTGCCTTGCGCCAACCAGAGAATTGGCTATTCAAGTATCCAAGGATTTCAAGGACATGACAAAGAAACTGTCTGTTACTTGTTTCTATGGTGGGAGCTCCTACAACCCCCAGCTTGATGCGATCCGCAGTGGCATCGATATCCTAGTGGGAACTCCAGGTCGTATCAAGGACCATCTACAGAATAACAAACTGGACCTGTCTCAATTGAAGCACGTTGTATTGGATGAAGTGGACCAAATGCTTGATATGGGCTTTGCAGAACAGGTCGAGGAGATACTGTCTGCGTCTTACCAAAAAGACTCTGAGACCAACCCCCAGACCCTGCTCTTCTCTGCCACATGCCCATCATGGGTGTATGATGTGGCAAAGAGGTACATGAGACCAACCTATGAGCATGTGGACCTCATTGGCAAAAAGACCCAGAAAGCTGCCACCACAGTAGAGCACCTTGCCATAGCGTGTCACTGGTCCCAGAGGGCTGCAGTCATTGGGGATGTGGTGCAGGTTTACAGCGGGAGCCACGGCCGCACCATCGTCTTCTGTGAGACCAAGAAGGATGCCAACGAGCTGTCAATGAATGCCTCCATAAAACAGAGTTCCCAGTCACTTCATGGGGACATTCCTCAGAAGCAGAGGGAGATTACACTGAAAGGCTTCAGAAGTGGCACCTTCGAGGTCTTAGTGGCCACCAACGTTGCTGCCCGCGGGTTGGACATCCCAGAGGTAGACCTGGTCGTGCAGTGCTCACCCCCAAAGGATGTAGAGTCCTACATTCACCGGTCAGGTCGAACTGGTCGGGCTGGCAGGACTGGCGTCTGCATCTGTTTCTACCAACGCAAAGAGGAAGACCAGCTCCGATATGTAGAACAGAAAGCAGGCATTACATTTAAGCGAGTTGGAGTGCCCACTGCCAATGACATCATCAAATCCTCCAGTAAAGACGCAGTGAGGTTTTTAGACTCTGTGCCTCCCCAAGCCATTGAGTATTTCCGCGTGTCTGCTACCAAACTGATTGAGGAGCGTGGGGCCGTGGAGGCCCTGTCTGCCGCCCTGGCACACATATCAGGAGCCACTGCCTTGGAGCAGAGGTCCCTCCTCAACTCTGACACGGGCTACACCACAATGACAATGAACTGCTCCCAGGAGCTGCAAAACATTGGCTGCGCCTGGCGTGGTCTGAAGGAGCAACTGGGAGAGGAGATTGACAACATGATCCGGGGGATGACCTTCCTCAAGGGCAAAATGGGAGTCTGTTTTGATGTCCCGGCTGACAAGGTAAAGGAGTACCAGGATGCCTGGCAGGATGGTAGACGTTGGCAGCTGTCAATCGCCACAGAGCTTCCTGAGCTGGAGGAGAAACCGCGCATGGGTGGTGACCGTGGATATGGACGTTCCTTCGGAGGACAGGGAGGTGGCCGTGGCTTCAGAAACGGCGGCGGCAACTGGAGAGGTGGAGGCAATCATAAACGCAGCTTCAGCAGTGCGTTTGATTATTAACCGCTGACTTCCCAGTCGCTGGACTGTTGAcatagctgtctgtctgtttcctggTTTTTACTGGTGTTTGGTGGACTGACTGTTACCAGCGCGAAAGGAAATTCCGCAAAATATATGTATGACCTGATTGATTTGCAATTATGCATTCAACTATCTGTACTTGGAATAAGCCCATTCATTAAAGGTTGTCTGAGGAAAT
>XM_036956250.1
ATATAGGTATATTGTGTACATAATTTTCATAAAACTATCATATGTCAGCACAGATTAGATGAACATTGTTATGAATGGAGTACAAACGCGCATAAAACAACTAAGAAGAAGACACACATATTTGTAAGCTAAAGAACCAACCTAAAGTTCCACATCACGGCGTCTAAATTGCTCTGTACTGACTTCCAATGAGAGGGCCGTTCTACCTACTCAATTTCTATGCTTGTTAAAGCTCTAGCGCAACACCACACAGTCGTGTCGTTCTTTCTGTACGCGTGCCGGTAGGGTTAGCCTGTGTCCACTCTAAGGGAAAACAACCGGGGAAGATGCCGTCAAAGATTATTTTTGAAACCGAAGACATCGGGATGGAAGGTGAAATGGACATTAGTGCGGGCAGTACGACACCCAAAAAAATAAAGGAGAAGAAGACCAAGGAGGGAAAGAAAATCAAGAAACAGAAAACGGTTGTTGAAGAGGAACCTGACTGTGAACCTCCTGCtcccaagaagaagaagaagaagaataaggAAAAAGAGGACAAAACTAACGGGGGCGCAGAAGTTGATGTTAACAGCAACGCAGAAGAATCGCCTTTGAAGGACAACACATCTCATTCCAATGAGGAGTCTGCAGACAATGACAAAGCAACTGAGaagaagaagaagaagaagaagaaaaaggaaaaaaaGACAGATGAAAAGATCATCGTCAACGGAGTGTTGCCTGAGACTCCCACGCTGATTGCACAAACTAATGGGCATACCGCGGCGATAACTCCAGCACAATCAAGCGAGGACTCCGACAGTGGAAAAGAAACCGAGACGCCAGAACAGAAAGAGGGAGCCTTCTCTAACTTCCGAATCTCCCCCAACACCATTAAACTACTTCAAGCAAGAGGCATATCTTACCTCTTTGACATCCAAACACAAACCTTCAATTCTGTGTACGAGGGAAAGGATGTGATTGGCCAGGCAAGAACAGGCACTGGGAAAACTTTAGCTTTTGCCATTCCGCTGATTGAGAAACTCCAAAATGACCCAGATGACAAGAAGAGGGGCAGAGCCCCAAAGATTTTGTGCCTTGCGCCAACCAGAGAATTGGCTATTCAAGTATCCAAGGATTTCAAGGACATGACAAAGAAACTGTCTGTTACTTGTTTCTATGGTGGGAGCTCCTACAACCCCCAGCTTGATGCGATCCGCAGTGGCATCGATATCCTAGTGGGAACTCCAGGTCGTATCAAGGACCATCTACAGAATAACAAACTGGACCTGTCTCAATTGAAGCACGTTGTATTGGATGAAGTGGACCAAATGCTTGATATGGGCTTTGCAGAACAGGTCGAGGAGATACTGTCTGCGTCTTACCAAAAAGACTCTGAGACCAACCCCCAGACCCTGCTCTTCTCTGCCACATGCCCATCATGGGTGTATGATGTGGCAAAGAGGTACATGAGACCAACCTATGAGCATGTGGACCTCATTGGCAAAAAGACCCAGAAAGCTGCCACCACAGTAGAGCACCTTGCCATAGCGTGTCACTGGTCCCAGAGGGCTGCAGTCATTGGGGATGTGGTGCAGGTTTACAGCGGGAGCCACGGCCGCACCATCGTCTTCTGTGAGACCAAGAAGGATGCCAACGAGCTGTCAATGAATGCCTCCATAAAACAGAGTTCCCAGTCACTTCATGGGGACATTCCTCAGAAGCAGAGGGAGATTACACTGAAAGGCTTCAGAAGTGGCACCTTCGAGGTCTTAGTGGCCACCAACGTTGCTGCCCGCGGGTTGGACATCCCAGAGGTAGACCTGGTCGTGCAGTGCTCACCCCCAAAGGATGTAGAGTCCTACATTCACCGGTCAGGTCGAACTGGTCGGGCTGGCAGGACTGGCGTCTGCATCTGTTTCTACCAACGCAAAGAGGAAGACCAGCTCCGATATGTAGAACAGAAAGCAGGCATTACATTTAAGCGAGTTGGAGTGCCCACTGCCAATGACATCATCAAATCCTCCAGTAAAGACGCAGTGAGGTTTTTAGACTCTGTGCCTCCCCAAGCCATTGAGTATTTCCGCGTGTCTGCTACCAAACTGATTGAGGAGCGTGGGGCCGTGGAGGCCCTGTCTGCCGCCCTGGCACACATATCAGGAGCCACTGCCTTGGAGCAGAGGTCCCTCCTCAACTCTGACACGGGCTACACCACAATGACAATGAACTGCTCCCAGGAGCTGCAAAACATTGGCTGCGCCTGGCGTGGTCTGAAGGAGCAACTGGGAGAGGAGATTGACAACATGATCCGGGGGATGACCTTCCTCAAGGGCAAAATGGGAGTCTGTTTTGATGTCCCGGCTGACAAGGTAAAGGAGTACCAGGATGCCTGGCAGGATGGTAGACGTTGGCAGCTGTCAATCGCCACAGAGCTTCCTGAGCTGGAGGAGAAACCGCGCATGGGTGGTGACCGTGGATATGGACGTTCCTTCGGAGGACAGGGAGGTGGCCGTGGCTTCAGAAACGGCGGCGGCAACTGGAGAGGTGGAGGCAATCATAAACGCAGCTTCAGCAGTGCGTTTGATTATTAACCGCTGACTTCCCAGTCGCTGGACTGTTGAcatagctgtctgtctgtttcctggTTTTTACTGGTGTTTGGTGGACTGACTGTTACCAGCGCGAAAGGAAATTCCGCAAAATATATGTATGACCTGATTGATTTGCAATTATGCATTCAACTATCTGTACTTGGAATAAGCCCATTCATTAAAGGTTGTCTGAGGAAATCAAA

Function

NR:

description
nucleolar RNA helicase 2-like isoform X1

GO: NA

KEGG:

id description
K16911 DDX21; ATP-dependent RNA helicase DDX21

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576525.2 False 2769 mRNA 0.49 14 35438980 35446537
XM_036956250.1 True 2776 mRNA 0.49 14 35438980 35446541

Neighbor

gene id symbol gene type direction distance location
LOC110499398 m4a15 coding upstream 21048 35410239 ~ 35417932 (+)
LOC110499396 LOC106589821 coding upstream 54413 35381609 ~ 35384567 (+)
LOC110499394 LOC106589820 coding upstream 64953 35338449 ~ 35374027 (+)
LOC110499393 LOC106589819 coding upstream 115698 35312611 ~ 35323282 (+)
LOC110499391 LOC106589815 coding upstream 259588 34766769 ~ 35179392 (+)
kifbp kif1bp coding downstream 19094 35465635 ~ 35468940 (+)
LOC110499404 srgn coding downstream 27079 35473620 ~ 35479099 (+)
LOC110499405 LOC106589824 coding downstream 46073 35492614 ~ 35498474 (+)
LOC110499406 LOC106589826 coding downstream 54238 35500779 ~ 35508659 (+)
LOC110499539 LOC105890937 coding downstream 64686 35511227 ~ 35522297 (+)
G1689218 NA non-coding upstream 18725 35418048 ~ 35420255 (+)
G1689237 NA non-coding upstream 22254 35415812 ~ 35416726 (+)
G1689229 NA non-coding upstream 33366 35400704 ~ 35405614 (+)
G1689215 NA non-coding upstream 51144 35387536 ~ 35387836 (+)
G1689214 NA non-coding upstream 52383 35386265 ~ 35386597 (+)
G1689303 NA non-coding downstream 104104 35550645 ~ 35551201 (+)
G1689337 NA non-coding downstream 170909 35617450 ~ 35617666 (+)
G1689342 NA non-coding downstream 196376 35642917 ~ 35643832 (+)
G1689299 NA non-coding downstream 198263 35644804 ~ 35645180 (+)
G1689295 NA non-coding downstream 198721 35645262 ~ 35645588 (+)
G1687675 NA other upstream 1112726 34325837 ~ 34326254 (+)
LOC118942060 LOC106589768 other upstream 2253704 33177293 ~ 33196167 (+)
G1686317 LOC106589755 other upstream 2777332 32654354 ~ 32661648 (+)
LOC110499316 LOC106589729 other upstream 5862422 29572397 ~ 29588171 (+)
G1689347 NA other downstream 234826 35681367 ~ 35682437 (+)
LOC118942012 LOC106589797 other downstream 254679 35701200 ~ 35702156 (+)
G1689671 NA other downstream 435037 35881578 ~ 35881874 (+)
G1689732 LOC106612293 other downstream 674075 36120616 ~ 36125390 (+)
G1690092 NA other downstream 818119 36264660 ~ 36264981 (+)

Expression


Co-expression Network