LOC110499402 (LOC106589795)


Basic Information

Item Value
gene id LOC110499402
gene name LOC106589795
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 35446811 ~ 35459745 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576529.2
GGAAACCTGGTTACCTGTCAATGTGGGCACCTGTGGTTTAAGTAAACCTGTCAGTGCGAGCACACAAGAGGTTTGAGGATTCCATGCACTGGGTCATTAGAAGATGCAACAAGGTCGTCTAAGACTGCGACCCTGGCTTGAGAAGCAGATACAGTCAGGGAAATACCCAGGTGTCACCTGGCTTGATGAGACAGCTCAAGTTTTCCAGATTCCTTGGAAGCATGCGGCTCGACATGGTTGGAATATAGACAAGGACGCCACTTTGTTCCGAAACTGGGCAATGCACACAGGCAGATACAAACCTGGGAAAGACGAACCTGATCCTAAGACCTGGAAAGCCAACTTCCGATGTGCCCTGAACACTCTACCCGATGTGAAAGAGCTACAGGGCAAGAGCATCAAGAAGGGCAGTAATGCCTCCAGGGTTTACATGATGCTGCCTGTTGTTAACCGTAACGAACGAAGAAAAGGACCTCAGAAGTCAGACGTCGATATAAAACATAGTCCGATCTCCCTCTCAGAAAATGAGGCACGTTCTTGTGCTCCACTGGATGGGTTTGCAGAGGTTTTCCTGACGTATAGAGGTGGACAGACCAGTCACAACCCTGCTATGTTTCATGTCGAGGACAACTACCCTCCCAACAACGAGGAAAGATCACCAGAACAACCATACTCTCAGcagtcttccttcacacctgaaGCACATAAAAACTCTGATGCTAATGAGCAAGCAGACGCTGTATTCAAGATAGTTGATCACCTAAAACACTTGGAGCACTGGAGCCAGTCTAATGACAACAGAAGCTGGGTGGACAGTTACTGTGAGGACATGGATTACTTGGGGTATCCCATGGAGACTGACTGCTACACTTACAGTGCACAGCAAATACCATTTCTATAAGACGAGTGGGAGCAACATGCATCCAACAGAATGCCAAGCTAAAATCCCTGAAAAAGGAGGATATACCACATTCCAAGCCATGCTGGCACAAGCTCTCTAAAATTCTGTATTGTGATGGACTGCAAGACGGCGACCAAGGGTCtgagcacacatacagtacattaaaaACTATTAAGTGCTACACCTTCACATTACAGTGACAGTCTACTTGTTCAGATTAGAATGACTGAGTTCTTTTAAATGTTTGCTTTTTATTGAACTTAAAATTGACACAATAGGCCTACATGTGGTTTACGTTATAACTAAATTTCTTAAATTGAGAGTTTTAGCATAGCATCTCAGGAAATACCCTTCAAGATTGAGATGgcttaggatgagttggaccagagtgaaggaaaaacatcaacagtgctcagcatatgtgggaactcccaagaatgttgaaaaagcattccttgtgaagctggttgagagaatgccaatagtgtgcaaag
>XM_021576528.2
AAGGAAACCTGGTTACCTGTCAATGTGGGCACCTGTGGTTTAAGTAAACCTGTCAGTGCGAGCACACAAGAGGTTTGAGGATTCCATGCACTGTGCACTTTTGTCAGGTGTGAGCTAAGGCAGACTGCAACCCTAGGGTCATTAGAAGATGCAACAAGGTCGTCTAAGACTGCGACCCTGGCTTGAGAAGCAGATACAGTCAGGGAAATACCCAGGTGTCACCTGGCTTGATGAGACAGCTCAAGTTTTCCAGATTCCTTGGAAGCATGCGGCTCGACATGGTTGGAATATAGACAAGGACGCCACTTTGTTCCGAAACTGGGCAATGCACACAGGCAGATACAAACCTGGGAAAGACGAACCTGATCCTAAGACCTGGAAAGCCAACTTCCGATGTGCCCTGAACACTCTACCCGATGTGAAAGAGCTACAGGGCAAGAGCATCAAGAAGGGCAGTAATGCCTCCAGGGTTTACATGATGCTGCCTGTTGTTAACCGTAACGAACGAAGAAAAGGACCTCAGAAGTCAGACGTCGATATAAAACATAGTCCGATCTCCCTCTCAGAAAATGAGGCACGTTCTTGTGCTCCACTGGATGGGTTTGCAGAGGTTTTCCTGACGTATAGAGGTGGACAGACCAGTCACAACCCTGCTATGTTTCATGTCGAGGACAACTACCCTCCCAACAACGAGGAAAGATCACCAGAACAACCATACTCTCAGcagtcttccttcacacctgaaGCACATAAAAACTCTGATGCTAATGAGCAAGCAGACGCTGTATTCAAGATAGTTGATCACCTAAAACACTTGGAGCACTGGAGCCAGTCTAATGACAACAGAAGCTGGGTGGACAGTTACTGTGAGGACATGGATTACTTGGGGTATCCCATGGAGACTGACTGCTACACTTACAGTGCACAGCAAATACCATTTCTATAAGACGAGTGGGAGCAACATGCATCCAACAGAATGCCAAGCTAAAATCCCTGAAAAAGGAGGATATACCACATTCCAAGCCATGCTGGCACAAGCTCTCTAAAATTCTGTATTGTGATGGACTGCAAGACGGCGACCAAGGGTCtgagcacacatacagtacattaaaaACTATTAAGTGCTACACCTTCACATTACAGTGACAGTCTACTTGTTCAGATTAGAATGACTGAGTTCTTTTAAATGTTTGCTTTTTATTGAACTTAAAATTGACACAATAGGCCTACATGTGGTTTACGTTATAACTAAATTTCTTAAATTGAGAGTTTTAGCATAGCATCTCAGGAAATACCCTTCAAGATTGAGATGgcttaggatgagttggaccagagtgaaggaaaaacatcaacagtgctcagcatatgtgggaactcccaagaatgttgaaaaagcattccttgtgaagctggttgagagaatgccaatagtgtgcaaag

Function

NR:

description
interferon regulatory factor 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576529.2 False 1395 mRNA 0.45 9 35446811 35459743
XM_021576528.2 True 1440 mRNA 0.45 9 35446811 35459745

Neighbor

gene id symbol gene type direction distance location
LOC110499399 LOC106589794 coding downstream 14361 35429125 ~ 35432450 (-)
LOC110499397 LOC106589822 coding downstream 41200 35387849 ~ 35405611 (-)
LOC110499392 LOC106589818 coding downstream 136622 35273214 ~ 35310189 (-)
LOC110499538 LOC106589816 coding downstream 763390 34649274 ~ 34683421 (-)
LOC110499389 LOC106589814 coding downstream 797847 34636155 ~ 34648964 (-)
LOC110499408 LOC106589827 coding upstream 101505 35561250 ~ 35567621 (-)
LOC110499415 LOC106589833 coding upstream 359284 35819029 ~ 35826024 (-)
LOC110499416 dnah17 coding upstream 404906 35864651 ~ 35951415 (-)
LOC110499419 LOC106589836 coding upstream 491828 35951573 ~ 35985223 (-)
LOC110499420 NA coding upstream 526766 35986511 ~ 35993622 (-)
G1689414 NA non-coding downstream 5167 35439246 ~ 35441644 (-)
G1689443 NA non-coding downstream 20372 35426216 ~ 35426439 (-)
G1689442 NA non-coding downstream 21473 35425107 ~ 35425338 (-)
G1689439 NA non-coding downstream 38100 35408370 ~ 35408711 (-)
G1689415 NA non-coding downstream 59536 35385035 ~ 35387275 (-)
G1689473 NA non-coding upstream 32170 35491915 ~ 35493696 (-)
G1689511 NA non-coding upstream 103855 35563600 ~ 35563891 (-)
G1689546 NA non-coding upstream 147818 35607563 ~ 35608098 (-)
G1689536 rufy2 non-coding upstream 175051 35634796 ~ 35636597 (-)
G1689557 NA non-coding upstream 184977 35644722 ~ 35646487 (-)
G1689131 NA other downstream 186603 35259886 ~ 35260208 (-)
G1689130 NA other downstream 186993 35258989 ~ 35259818 (-)
G1687007 LOC106589782 other downstream 1902573 33531084 ~ 33544238 (-)
LOC110499358 LOC106589782 other downstream 1912535 33530945 ~ 33535225 (-)
G1686887 NA other downstream 2368784 33077810 ~ 33078027 (-)
G1689461 NA other upstream 18369 35478114 ~ 35480057 (-)
G1689556 NA other upstream 183623 35643368 ~ 35643777 (-)
LOC110499427 LOC106612293 other upstream 660762 36120507 ~ 36125437 (-)
G1690367 NA other upstream 959971 36418789 ~ 36420600 (-)

Expression


Co-expression Network