LOC110499405 (LOC106589824)


Basic Information

Item Value
gene id LOC110499405
gene name LOC106589824
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 35492614 ~ 35498474 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576533.2
GTGTTGCCATTGCTTCTGTATTCACAGATATACTGCTTCTCTGTTTTGTGTATCGACACAGGAATTAGCAACACGGAGGCTAGCTAGCTGTCACAGCAGTTTAAACAGATGAAATGAGTTTCCTGGGTGGTTTATTTGGTCCTGTGTGTGAAATTGATGTCCTACTCAATGATGCAGAGACTAGGAAGACTGCAGAACTCAAAACAGAGGATGGAAAAGTGGAAAAGAACTACCTTTTTTATGATGGAGAATCTGTCTCTGGGAAGGTGAATCTCAATGTGAGGCAGACGGGCAAGAGACTTGAACACCAGGGGATTCGAATTGAGTTTGTTGGGCAGATTGAGCTCTTCAGTGATAAAAGCAACACACATGAGTTTGTTAACCTGGTGAAGGAGCTTGCCCTGCCAGGGGAGTTGACCCAGAACCGAAGCTACGACTTTGAGTTCACGCAGGTGGAGAAGCCCTATGAATCTTACGTTGGAACCAATGTCCGACTGAGATATTTCCTCAAAGTGACAGTAATGAGGAGACTGTCTGATCTGGTGAAAGAGTATGAGCTCATTGTCCATCAGCTGGCTACTTACCCTGATGTGAATAATTCCATTAAAATGGAAGTTGGCATTGAAGACTGTCTACACATAGAGTTTGAATACAACAAGTCCAaGTACCACTTGAAAGATGTCATTGTGGGTAAAATCTATTTCCTTCTGGTGAGAATCAAAATCCAGCACATGGAACTTCAGTTGATAAAGAAGGAGATGACTGGAATAGGGCCTAGCACAACTACAGAGACGGACACTGTTGCCAAGTATGACATAATGGATGGCGCCCCTGTGAAAGGAGAGTCCATTCCCATCCGTCTGTTTTTGGCTGGCTACGACCTGACAGCCACCATGAGGGATGTCAACAAGAAGTTCTCTGTGCGGTACTTCCTCAACCTAGTGCTCGTGGATGAGGAGGACAGGAGATACTTCAAACAGCAGGAGGTCGTTCTCTGGAGGAAAGCTCCTGAGAAAATAAGGAAGCGGAACTTCCAACGCTACGAGTCGCCGGAGCCACGGCCGACGCTTACTGCTGAGCAGCAACCCGAAATGTGAAAGCCAATCGGAGTGAAACGGAAAAATGCTGAGAATGCTTCTGATTATAGCTTAAAGCaaatgagaagagagaggaagtgcaacttgacacGCAAGGAGAAAATAAAGAGTCAGCCATTTAATAGATCTACCTTCTGCAATGTGACAGTGACCTACTGGTGCATCTGACTGTGCTGGGTCTACTCTGTTTAGCGTACTGTATGGACTCGTCTCTTTGACACACAATAAATAGCACTGGAATGGGAGCTACCATCACATTTTTGGGGGACCTACCCTCTCTGTAAAAGAGGCACTTGGTTTGGCTCAACACTGGCATACAATCATTCACTTCTAGATATTTCAAAGGATGTTCCAGTGCATGTAAGCAGGTCAAATTGAATGTGATGGGTTAGTATCATGTCAATGCTGGCAGTCGGGTCAATTTCTAAGGTCAAGCTGTAAGAAAATAGGCATTATTTGAGCTCAAATAGTACCTTGTTTATAATTCACCTTAAGATGTAAAAGATTTCTAACTCCTAAGTCTTTTAGTGTAGCTATAACCTGTAGTTTGATTCTTTTTTTCACTTCACTTTTTCTTGTAATTTGCGCCTTCAAATATATTATATCAATAAATGCTTTTGCTAGGGGCATTGGATTGAGGTGAGACAAAATGCTGTTTAATGGGTacttacattttttgggggactaGATTTAGGGAAATATCACTTCACATAATTTCTCTAAGGTTAAATATTTAAACTCAGATGGGGCTGTGCTACATCTGAACACTATACAggcaatatattttttaagtgcCTGTAAGGTCATGAAGAAACTGTTATGCCAAATACTGCCCTGACCCACCACTGCATGTTAATTTTTATACTGGGTCCAATGTAACAGACTTGTGTGGACGTTGAACATTTGTATATATCCAACCTGTCTATATCCATCTGTCATCGACTCAAAGGAAATGCGAATTTAGACTTGTATGTATTGGAGTGATGTCTTTAATACGTTTTGATTACTTATGCACTGAATaacaatataaatgcaacatgtaaagtgttggtttcatgagctgaaataaaagatccccgaaATTGTCCAATa

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K18466 VPS26; vacuolar protein sorting-associated protein 26

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576533.2 True 2189 mRNA 0.42 9 35492614 35498474

Neighbor

gene id symbol gene type direction distance location
LOC110499404 srgn coding upstream 13515 35473620 ~ 35479099 (+)
kifbp kif1bp coding upstream 23674 35465635 ~ 35468940 (+)
LOC110499400 LOC100194728 coding upstream 46073 35438980 ~ 35446541 (+)
LOC110499398 m4a15 coding upstream 74682 35410239 ~ 35417932 (+)
LOC110499396 LOC106589821 coding upstream 108047 35381609 ~ 35384567 (+)
LOC110499406 LOC106589826 coding downstream 2305 35500779 ~ 35508659 (+)
LOC110499539 LOC105890937 coding downstream 12753 35511227 ~ 35522297 (+)
LOC110499407 LOC106589825 coding downstream 38458 35536932 ~ 35558759 (+)
LOC110499410 LOC106589828 coding downstream 72780 35571254 ~ 35605240 (+)
LOC110499411 rufy2 coding downstream 124160 35622634 ~ 35641168 (+)
G1689218 NA non-coding upstream 72359 35418048 ~ 35420255 (+)
G1689237 NA non-coding upstream 75888 35415812 ~ 35416726 (+)
G1689229 NA non-coding upstream 87000 35400704 ~ 35405614 (+)
G1689215 NA non-coding upstream 104778 35387536 ~ 35387836 (+)
G1689214 NA non-coding upstream 106017 35386265 ~ 35386597 (+)
G1689303 NA non-coding downstream 52171 35550645 ~ 35551201 (+)
G1689337 NA non-coding downstream 118976 35617450 ~ 35617666 (+)
G1689342 NA non-coding downstream 144443 35642917 ~ 35643832 (+)
G1689299 NA non-coding downstream 146330 35644804 ~ 35645180 (+)
G1689295 NA non-coding downstream 146788 35645262 ~ 35645588 (+)
G1687675 NA other upstream 1166360 34325837 ~ 34326254 (+)
LOC118942060 LOC106589768 other upstream 2307338 33177293 ~ 33196167 (+)
G1686317 LOC106589755 other upstream 2830966 32654354 ~ 32661648 (+)
LOC110499316 LOC106589729 other upstream 5916056 29572397 ~ 29588171 (+)
G1689347 NA other downstream 182893 35681367 ~ 35682437 (+)
LOC118942012 LOC106589797 other downstream 202746 35701200 ~ 35702156 (+)
G1689671 NA other downstream 383104 35881578 ~ 35881874 (+)
G1689732 LOC106612293 other downstream 622142 36120616 ~ 36125390 (+)
G1690092 NA other downstream 766186 36264660 ~ 36264981 (+)

Expression


Co-expression Network