LOC110499410 (LOC106589828)


Basic Information

Item Value
gene id LOC110499410
gene name LOC106589828
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 35571254 ~ 35605240 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956257.1
ATTCCTCGCAGTGTCCTAATTGGGGCGTCTGACTATCAGTCAAAAAATATTTACTGCTGGCAGGTGGTGCTTTAACAGAGTTCCAGGTGTGTGGGACGAGAAACAGGAAGTTCATCTTTCGGAATCGAAAGAGGGATCAAACATGTCCAATGATGTCAGATATTGTGAGAAGTTCTCCTACGTCTTCCTAAAGTTCGCCCTCATTGTATATTCCACTATCTTCTGGCTGGTTGGGGGATTCGTCCTAGCCATTGGTATTTATGCGGAGGTGGAGCGACAGCGCTACAAAACCCTGCAGGGGGTGTTCCTGGCCCCCGCCATCATCCTCATCGTCCTGGGGGTGGTGATGTTCATTGTCTCCTTCATCGGTGTGTTAGCCTCCCTCAGGGACAACCTGCTGCTCCTCAAAGTGTTCAAATGTTGTGGAGGGCAGGAGTACAAAGACTGGGAAGTGAACATGTACCATAACTGTACAGCTCCTGGACCGCTGGCATGTGGAGTGCCTTACACCTGCTGCCTCGAAAACAAGCCTAATGAAGTTGCCAACACACTATGTGGATTTAAGGTCCTTGAAAATGAGAGGCTGGCCTTGCAGGAAGTCATCTACATCAGAGGTTGTACTGATGCTGTCTTCATCTGGCTCATGGATAACTATAAGATAATGGCTGGCTTGCTGCTTGGCATCTTATTCCCCCAGTTCTTGGGCGTGATCATTAGCTGGCTCTACATCACACGAGTGGAGGATGCCATTGCTGAGTATGGTAACTACCAGGATGGACTGCTGGACGCAGGGGACAGTGATGGCTTCAGGGAACCCAAGAAGCAGAGCAGAATGGCCAAATGTTGCAGGTGCATGCCAGAGATCGACTGAGCGTGCCTCATGTTATCTAACTAGCCTAAAACACTGCTGTGCCTGCCTCAGCCTTCCAACACACTGGAGCTATCAGCTCGAGTTTTACAACCACTGTTCAGAGACCTTTTAGTGTGTGTTTTTGGTTCTATTCAGggattgtttgttttttcaggGGTTCATTTATTAAGGTTTTATTAGGATGGAAGGGTATACATACCGGTATGTGCCTGTGCTGTGTGAAAAATAAATGGCtttttatt
>XM_021576540.2
TCCTCGCAGTGTCCTAATTGGGGCGTCTGACTATCAGTCAAAAAATATTTACTGCTGGCAGGTGGTGCTTTAACAGAGTTCCAGGTGTGTGGGACGAGAAACAGGAAGTTCATCTTTCGGAATCGAAAGAGGGATCAAACATGTCCAATGATGTCAGATATTGTGAGAAGTTCTCCTACGTCTTCCTAAAGTTCGCCCTCATTGTATATTCCACTATCTTCTGGCTGGTTGGGGGATTCGTCCTAGCCATTGGTATTTATGCGGAGGTGGAGCGACAGCGCTACAAAACCCTGCAGGGGGTGTTCCTGGCCCCCGCCATCATCCTCATCGTCCTGGGGGTGGTGATGTTCATTGTCTCCTTCATCGGTGTGTTAGCCTCCCTCAGGGACAACCTGCTGCTCCTCAAAGTGTTTCTCTACACCTTGACATTCTGTCTTATTCTGGAGCTCCTCGGTGGCATCCTGGCTCTGGTTTTCAGGCATCAGACAGTGGATCTCTTAAACAAAAACATTCGGAAAGGAATGGTGAATTACTACGATGATCTGGATTTCAAAAACATCATGGACTTTGTTCAGAGAAAGTTCAAATGTTGTGGAGGGCAGGAGTACAAAGACTGGGAAGTGAACATGTACCATAACTGTACAGCTCCTGGACCGCTGGCATGTGGAGTGCCTTACACCTGCTGCCTCGAAAACAAGCCTAATGAAGTTGCCAACACACTATGTGGATTTAAGGTCCTTGAAAATGAGAGGCTGGCCTTGCAGGAAGTCATCTACATCAGAGGTTGTACTGATGCTGTCTTCATCTGGCTCATGGATAACTATAAGATAATGGCTGGCTTGCTGCTTGGCATCTTATTCCCCCAGTTCTTGGGCGTGATCATTAGCTGGCTCTACATCACACGAGTGGAGGATGCCATTGCTGAGTATGGTAACTACCAGGATGGACTGCTGGACGCAGGGGACAGTGATGGCTTCAGGGAACCCAAGAAGCAGAGCAGAATGGCCAAATGTTGCAGGTGCATGCCAGAGATCGACTGAGCGTGCCTCATGTTATCTAACTAGCCTAAAACACTGCTGTGCCTGCCTCAGCCTTCCAACACACTGGAGCTATCAGCTCGAGTTTTACAACCACTGTTCAGAGACCTTTTAGTGTGTGTTTTTGGTTCTATTCAGggattgtttgttttttcaggGGTTCATTTATTAAGGTTTTATTAGGATGGAAGGGTATACATACCGGTATGTGCCTGTGCTGTGTGAAAAATAAATGGCtttttattaata

Function

NR:

description
tetraspanin-15-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17297 TSPAN15; tetraspanin-15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956257.1 False 1113 mRNA 0.48 6 35571254 35605236
XM_021576540.2 True 1286 mRNA 0.47 8 35571256 35605240

Neighbor

gene id symbol gene type direction distance location
LOC110499407 LOC106589825 coding upstream 12495 35536932 ~ 35558759 (+)
LOC110499539 LOC105890937 coding upstream 48957 35511227 ~ 35522297 (+)
LOC110499406 LOC106589826 coding upstream 62595 35500779 ~ 35508659 (+)
LOC110499405 LOC106589824 coding upstream 72780 35492614 ~ 35498474 (+)
LOC110499404 srgn coding upstream 92155 35473620 ~ 35479099 (+)
LOC110499411 rufy2 coding downstream 17394 35622634 ~ 35641168 (+)
LOC110499412 LOC106589830 coding downstream 46427 35651667 ~ 35662421 (+)
LOC110499413 LOC106589831 coding downstream 57268 35662508 ~ 35672943 (+)
LOC110499414 pbld2 coding downstream 70542 35675782 ~ 35679430 (+)
LOC118942012 LOC106589797 coding downstream 95960 35701200 ~ 35702156 (+)
G1689303 NA non-coding upstream 20053 35550645 ~ 35551201 (+)
G1689245 NA non-coding upstream 55864 35434519 ~ 35515390 (+)
G1689218 NA non-coding upstream 150999 35418048 ~ 35420255 (+)
G1689237 NA non-coding upstream 154528 35415812 ~ 35416726 (+)
G1689229 NA non-coding upstream 165640 35400704 ~ 35405614 (+)
G1689337 NA non-coding downstream 12210 35617450 ~ 35617666 (+)
G1689342 NA non-coding downstream 37677 35642917 ~ 35643832 (+)
G1689299 NA non-coding downstream 39564 35644804 ~ 35645180 (+)
G1689295 NA non-coding downstream 40022 35645262 ~ 35645588 (+)
G1689300 NA non-coding downstream 40463 35645703 ~ 35646183 (+)
LOC110499396 LOC106589821 other upstream 186688 35381609 ~ 35384567 (+)
G1687675 NA other upstream 1245000 34325837 ~ 34326254 (+)
LOC118942060 LOC106589768 other upstream 2385978 33177293 ~ 33196167 (+)
G1686317 LOC106589755 other upstream 2909606 32654354 ~ 32661648 (+)
LOC110499316 LOC106589729 other upstream 5994696 29572397 ~ 29588171 (+)
G1689347 NA other downstream 76127 35681367 ~ 35682437 (+)
G1689671 NA other downstream 276338 35881578 ~ 35881874 (+)
G1689732 LOC106612293 other downstream 515376 36120616 ~ 36125390 (+)
G1690092 NA other downstream 659420 36264660 ~ 36264981 (+)

Expression


Co-expression Network