LOC110499414 (pbld2)


Basic Information

Item Value
gene id LOC110499414
gene name pbld2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 35675782 ~ 35679430 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576546.2
ACGTGTCAAACTCCGGCGTACAGGAAGTCTCAAATGTAATCAACATGACTGCGTTTTTGGCATGTCAGACAAAATTACAAAACTAGctttctaaatatatatatatttaaaatgtagCTAGTTTCATAAACATATTTTTGGGAATTCTGATATTTATTGGAATAAATGCCCAAACTataaaactagctagctacctgacagTTACGTTAGTTTTAACTAGCTATGTTCGCTTGCTAGGTACCTTTTTAAATACGTTTTTAAGATCAATATTTCCACCAAGGAGGTTGCCTCTCCAATCATCACTCTCACTCCCTTAGGCAAGGGACATAAGCACAGGTCTACTCTAGTAAGTAATGGAGATTCCAGTATTCACTGTTGATGCGTTTACCAATTTACCTTTCAAAGGAAATCCTGCAGCAGTTTGTCTGCTTTTACATGAATTGCAGGATGATATGTACCAGAACATTGCTGCTGAGATGAACCTGTCAGAGACTGCCTTCATCATACGGCTGAATTCAAAAGATGACTTCAGCTCAGGAGCACGTTTTCGTTTGCGTTGGTTCACCCCCACCACTGAGGTTCCTCTGTGTGGCCATGCCACCCTGGCTTCAGCTGCAGTACTGTTTTACAAAAAAAAAAATGTCAACTCAACAGTGGTATTTGAGACATTGAGTGGAGAGCTGTATGTGCGACAACAAGGGGAATCTATAGTGATGGATTTCCCCCTGAACAAACCTACTCCTGTGGGTCTTAATGAATTTAAAGACATAGTTAAAGCTGCTGTGGGAGACCAGCCAGTTCAAGAAGTGTGCCTCTGTGCCATCACCAAAATGCTAATGGTGTGCCTTGCTGACAGTTGTGACAGGTCAGTGCTCACATCCCTGCAGCCAGACCCAGCAGTTCTGCTTCGTGTAGACACTGGCGGGAGGGTTAGGGGTCTGCTTGTCACCAGTATTGGAGACCCTGGCTGTCAGCCTGGCTATGACTTCTACTCCAGAAACTTCTTCCCTTGGTTCGGGGTTCCTGAGGACCCTGTGACTggcTCTGCGCATACTGTCCTTACAGGCTACTGGTCAGAGAAACTTGGCAAGAAAAAGATGCTAGCCTATCAGTGCTCTAGTCGTGGCGGGGAGCTGGAGCTTGAACTACAGGATGATGGCAGGCTCAATATCGCTGGCCAGGCGGTAACTGTCCTGCAGGGGATTCTCACTGTGTAGAGACTATGCTGTTTACTCAGAACGAGCCAAATGTACAACAGGAGCATAGcaattaaatgttt
>XM_021576547.2
TCGGATTTGACGATGTAAAACGTAATTCGAGGGTTTAGGACCCAGGGCTGTAGTTTGTACTGCTGCCTATATAGGATCAAAATAGTCTAGGTGGGGTTCTCTCATTGTCTCCTCTTGACAAGGATTTTGAAACAAAATACACATTTACCCTGGGCAGATGCCTACCTACAGTTTCGATCAAATCAATGAAATAAAGATAGCTAGGAGACCAGGGATGCCTAACCTTTTTCACCTGCACTGGTCTGAAAGCGCAATATTTTGGGCCTATTCTATGGGGAGATTGTCTAGCCAAGCCTGCCCTATCAAGTCGGTGCAGACGAAGAAACTGAGGAAGCAATAGACTTTAGACTCTTGGAATGATACACCCTCTGGTTAAAGTTTATTTGGAGGCGTGCAGCTGTTAAACTTATTCATTTCTCTCCGTGAAATCAGCACAGGTCTACTCTAGTAAGTAATGGAGATTCCAGTATTCACTGTTGATGCGTTTACCAATTTACCTTTCAAAGGAAATCCTGCAGCAGTTTGTCTGCTTTTACATGAATTGCAGGATGATATGTACCAGAACATTGCTGCTGAGATGAACCTGTCAGAGACTGCCTTCATCATACGGCTGAATTCAAAAGATGACTTCAGCTCAGAAAATGTCAACTCAACAGTGGTATTTGAGACATTGAGTGGAGAGCTGTATGTGCGACAACAAGGGGAATCTATAGTGATGGATTTCCCCCTGAACAAACCTACTCCTGTGGGTCTTAATGAATTTAAAGACATAGTTAAAGCTGCTGTGGGAGACCAGCCAGTTCAAGAAGTGTGCCTCTGTGCCATCACCAAAATGCTAATGGTGTGCCTTGCTGACAGTTGTGACAGGTCAGTGCTCACATCCCTGCAGCCAGACCCAGCAGTTCTGCTTCGTGTAGACACTGGCGGGAGGGTTAGGGGTCTGCTTGTCACCAGTATTGGAGACCCTGGCTGTCAGCCTGGCTATGACTTCTACTCCAGAAACTTCTTCCCTTGGTTCGGGGTTCCTGAGGACCCTGTGACTggcTCTGCGCATACTGTCCTTACAGGCTACTGGTCAGAGAAACTTGGCAAGAAAAAGATGCTAGCCTATCAGTGCTCTAGTCGTGGCGGGGAGCTGGAGCTTGAACTACAGGATGATGGCAGGCTCAATATCGCTGGCCAGGCGGTAACTGTCCTGCAGGGGATTCTCACTGTGTAGAGACTATGCTGTTTACTCAGAACGAGCCAAATGTACAACAGGAGCATAGcaattaaatgttt
>XM_021576545.2
TCGGATTTGACGATGTAAAACGTAATTCGAGGGTTTAGGACCCAGGGCTGTAGTTTGTACTGCTGCCTATATAGGATCAAAATAGTCTAGGTGGGGTTCTCTCATTGTCTCCTCTTGACAAGGATTTTGAAACAAAATACACATTTACCCTGGGCAGATGCCTACCTACAGTTTCGATCAAATCAATGAAATAAAGATAGCTAGGAGACCAGGGATGCCTAACCTTTTTCACCTGCACTGGTCTGAAAGCGCAATATTTTGGGCCTATTCTATGGGGAGATTGTCTAGCCAAGCCTGCCCTATCAAGTCGGTGCAGACGAAGAAACTGAGGAAGCAATAGACTTTAGACTCTTGGAATGATACACCCTCTGGTTAAAGTTTATTTGGAGGCGTGCAGCTGTTAAACTTATTCATTTCTCTCCGTGAAATCAGCACAGGTCTACTCTAGTAAGTAATGGAGATTCCAGTATTCACTGTTGATGCGTTTACCAATTTACCTTTCAAAGGAAATCCTGCAGCAGTTTGTCTGCTTTTACATGAATTGCAGGATGATATGTACCAGAACATTGCTGCTGAGATGAACCTGTCAGAGACTGCCTTCATCATACGGCTGAATTCAAAAGATGACTTCAGCTCAGGAGCACGTTTTCGTTTGCGTTGGTTCACCCCCACCACTGAGGTTCCTCTGTGTGGCCATGCCACCCTGGCTTCAGCTGCAGTACTGTTTTACAAAAAAAAAAATGTCAACTCAACAGTGGTATTTGAGACATTGAGTGGAGAGCTGTATGTGCGACAACAAGGGGAATCTATAGTGATGGATTTCCCCCTGAACAAACCTACTCCTGTGGGTCTTAATGAATTTAAAGACATAGTTAAAGCTGCTGTGGGAGACCAGCCAGTTCAAGAAGTGTGCCTCTGTGCCATCACCAAAATGCTAATGGTGTGCCTTGCTGACAGTTGTGACAGGTCAGTGCTCACATCCCTGCAGCCAGACCCAGCAGTTCTGCTTCGTGTAGACACTGGCGGGAGGGTTAGGGGTCTGCTTGTCACCAGTATTGGAGACCCTGGCTGTCAGCCTGGCTATGACTTCTACTCCAGAAACTTCTTCCCTTGGTTCGGGGTTCCTGAGGACCCTGTGACTggcTCTGCGCATACTGTCCTTACAGGCTACTGGTCAGAGAAACTTGGCAAGAAAAAGATGCTAGCCTATCAGTGCTCTAGTCGTGGCGGGGAGCTGGAGCTTGAACTACAGGATGATGGCAGGCTCAATATCGCTGGCCAGGCGGTAACTGTCCTGCAGGGGATTCTCACTGTGTAGAGACTATGCTGTTTACTCAGAACGAGCCAAATGTACAACAGGAGCATAGcaattaaatgttttaaaaaactcTGA

Function

symbol description
pbld2 Predicted to enable isomerase activity. Predicted to act upstream of or within biosynthetic process. Predicted to be active in cytoplasm. Is expressed in myotome. Orthologous to human PBLD (phenazine biosynthesis like protein domain containing).

NR:

description
phenazine biosynthesis-like domain-containing protein 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576546.2 False 1279 mRNA 0.45 10 35675782 35679417
XM_021576547.2 False 1281 mRNA 0.46 8 35676119 35679417
XM_021576545.2 True 1393 mRNA 0.46 9 35676119 35679430

Neighbor

gene id symbol gene type direction distance location
LOC110499413 LOC106589831 coding upstream 2839 35662508 ~ 35672943 (+)
LOC110499412 LOC106589830 coding upstream 13361 35651667 ~ 35662421 (+)
LOC110499411 rufy2 coding upstream 34614 35622634 ~ 35641168 (+)
LOC110499410 LOC106589828 coding upstream 70542 35571254 ~ 35605240 (+)
LOC110499407 LOC106589825 coding upstream 117023 35536932 ~ 35558759 (+)
LOC118942012 LOC106589797 coding downstream 21770 35701200 ~ 35702156 (+)
LOC110499417 LOC106589835 coding downstream 157893 35837323 ~ 35866849 (+)
LOC118942471 NA coding downstream 204750 35884180 ~ 35884233 (+)
LOC118942065 NA coding downstream 291794 35971224 ~ 35975420 (+)
LOC110499421 LOC106612362 coding downstream 341669 36021099 ~ 36028246 (+)
G1689294 NA non-coding upstream 26416 35647067 ~ 35649366 (+)
G1689300 NA non-coding upstream 29599 35645703 ~ 35646183 (+)
G1689295 NA non-coding upstream 30194 35645262 ~ 35645588 (+)
G1689299 NA non-coding upstream 30602 35644804 ~ 35645180 (+)
G1689342 NA non-coding upstream 31950 35642917 ~ 35643832 (+)
G1689357 NA non-coding downstream 19819 35699249 ~ 35699456 (+)
G1689345 NA non-coding downstream 22783 35702213 ~ 35705279 (+)
G1689587 NA non-coding downstream 27223 35706653 ~ 35707228 (+)
G1689592 NA non-coding downstream 30184 35709614 ~ 35709832 (+)
G1689610 NA non-coding downstream 49531 35728961 ~ 35729163 (+)
LOC110499396 LOC106589821 other upstream 291216 35381609 ~ 35384567 (+)
G1687675 NA other upstream 1349528 34325837 ~ 34326254 (+)
LOC118942060 LOC106589768 other upstream 2490506 33177293 ~ 33196167 (+)
G1686317 LOC106589755 other upstream 3014134 32654354 ~ 32661648 (+)
LOC110499316 LOC106589729 other upstream 6099224 29572397 ~ 29588171 (+)
G1689347 NA other downstream 1937 35681367 ~ 35682437 (+)
G1689671 NA other downstream 202148 35881578 ~ 35881874 (+)
G1689732 LOC106612293 other downstream 441186 36120616 ~ 36125390 (+)
G1690092 NA other downstream 585230 36264660 ~ 36264981 (+)

Expression


Co-expression Network