LOC118942012 (LOC106589797)


Basic Information

Item Value
gene id LOC118942012
gene name LOC106589797
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 35701200 ~ 35702156 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955559.1
gaaacacaacacacacacacacctgggagcAAAGCAGTGCGGACGGATGGAACATAAAACACACACTAAGAACTACACCACGCACCACACACGCCGAGACAGAACAAATGCTGACTCCAGACAACCTTATCAGAGGAAGCAGCAGCCCCAGTAGCAGCAGAAAGAAGAGAACCACGAGGAAAACCACCAGAGGAacccctctcactcctctcctcttccaaggACCTCAGCTCTGAGATGGGCTGCTCCTCGGGACGCCAGACCCCAGGGCATCACTCAGACCTGGACTGTGGCAGCAGCCTACCCCCGGAGTCGCCCCATGGAGGAGGGGACCTGGTCTTACCCCCAGAGTCACTCTCTACGCTGCAGTGTCTGGCCCAGGCCACGGGTGGTACGGAGAAGTCCTGGTACCGCTGTGTGTTTCCGTTCGGGGTGATCTCTTTGGTGATCGGGGTAGCGGGAACGGCAGTCACCTTCATGTATAACACGCCAGACCTGTACCAGACCAAGGTGGTGTCCATGGTGCtgctggtggtgggggtggtcATGCTGCTGATGGCGGCCATCTGCTGGAGGGACCACaggctgaagaggaggaagaagaaggagggaggtttcTTCTGCTCCGAACAGGGCAACATGTGAGgtctgg
>TU1932214
acctgggagcAAAGCAGTGCGGACGGATGGAACATAAAACACACACTAAGAACTACACCACGCACCACACACGCCGAGACAGAACAAATGCTGACTCCAGACAACCTTATCAGAGGAAGCAGCAGCCCCAGTAGCAGCAGAAAGAAGAGAACCACGAGGAAAACCACCAGAGGAacccctctcactcctctcctcttccaaggACCTCAGCTCTGAGATGGGCTGCTCCTCGGGACGCCAGACCCCAGGGCATCACTCAGACCTGGACTGTGGCAGCAGCCTACCCCCGGAGTCGCCCCATGGAGGAGGGGACCTGGTCTTACCCCCAGAGTCACTCTCTACGCTGCAGTGTCTGGCCCAGGCCACGGGTGGTACGGAGAAGTCCTGGTACCGCTGTGTGTTTCCGTTCGGGGTGATCTCTTTGGTGATCGGGGTAGCGGGAACGGCAGTCACCTTCATGTATAACACGCCAGACCTGTACCAGACCAAGGTGGTGTCCATGGTGCtgctggtggtgggggtggtcATGCTGCTGATGGCGGCCATCTGCTGGAGGGACCACaggctgaagaggaggaagaagaaggagggaggtttcTTCTGCTCCGAACAGGG

Function

NR:

description
transmembrane protein 100-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955559.1 False 652 mRNA 0.58 2 35701200 35702156
TU1932214 True 615 TUCP 0.59 2 35701220 35702139

Neighbor

gene id symbol gene type direction distance location
LOC110499414 pbld2 coding upstream 21770 35675782 ~ 35679430 (+)
LOC110499413 LOC106589831 coding upstream 28257 35662508 ~ 35672943 (+)
LOC110499412 LOC106589830 coding upstream 38779 35651667 ~ 35662421 (+)
LOC110499411 rufy2 coding upstream 60032 35622634 ~ 35641168 (+)
LOC110499410 LOC106589828 coding upstream 95960 35571254 ~ 35605240 (+)
LOC110499417 LOC106589835 coding downstream 135167 35837323 ~ 35866849 (+)
LOC118942471 NA coding downstream 182024 35884180 ~ 35884233 (+)
LOC118942065 NA coding downstream 269068 35971224 ~ 35975420 (+)
LOC110499421 LOC106612362 coding downstream 318943 36021099 ~ 36028246 (+)
LOC110499422 arl3 coding downstream 335566 36037722 ~ 36046077 (+)
G1689357 NA non-coding upstream 1744 35699249 ~ 35699456 (+)
G1689294 NA non-coding upstream 51834 35647067 ~ 35649366 (+)
G1689300 NA non-coding upstream 55017 35645703 ~ 35646183 (+)
G1689295 NA non-coding upstream 55612 35645262 ~ 35645588 (+)
G1689299 NA non-coding upstream 56020 35644804 ~ 35645180 (+)
G1689345 NA non-coding downstream 57 35702213 ~ 35705279 (+)
G1689587 NA non-coding downstream 4497 35706653 ~ 35707228 (+)
G1689592 NA non-coding downstream 7458 35709614 ~ 35709832 (+)
G1689610 NA non-coding downstream 26805 35728961 ~ 35729163 (+)
G1689615 NA non-coding downstream 58832 35760988 ~ 35761212 (+)
G1689347 NA other upstream 18763 35681367 ~ 35682437 (+)
LOC110499396 LOC106589821 other upstream 316634 35381609 ~ 35384567 (+)
G1687675 NA other upstream 1374946 34325837 ~ 34326254 (+)
LOC118942060 LOC106589768 other upstream 2515924 33177293 ~ 33196167 (+)
G1686317 LOC106589755 other upstream 3039552 32654354 ~ 32661648 (+)
G1689671 NA other downstream 179422 35881578 ~ 35881874 (+)
G1689732 LOC106612293 other downstream 418460 36120616 ~ 36125390 (+)
G1690092 NA other downstream 562504 36264660 ~ 36264981 (+)
G1690099 NA other downstream 573326 36275482 ~ 36275943 (+)
G1690116 NA other downstream 602783 36304939 ~ 36312698 (+)

Expression


Co-expression Network