LOC110499415 (LOC106589833)


Basic Information

Item Value
gene id LOC110499415
gene name LOC106589833
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 35819029 ~ 35826024 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956265.1
ctggttcgtaTTCTCGAGACAACTAGGTGAAAATCGGTCTATGTGCCTTTGAGCAGGCACTTAACCCAATTGgctctggataagtgtgtctgctaaatgacgtgAATGTAAAGTACAATGTAGGCTAGTTGTCAGTCAGGAATTATGGGTTTCCTCAAGGGTAAATAAGCGTCTTCAACTGTTTCATCTTGTCAGGGCggagtggagggaaagggaggactCACCAGCTAATACGGGAATCGCCCCGTAAAAGAAGGTCACACACTGATTAttcttttgtgtgtatgtgtgtgtgtgtacttactgGAAGAACTTCGGAGCTGAGGAGGTGGAGCCTTACGAATATCAGCTCTAGAGACTACTCGCTGGTCGCTGTAACGCAACTACCTCCGTTTGCTGGATAGAGAAAAAAGGACAGAGTAttgtttatgatctatttcacttgctttggtaatataaacatgtttcccatgcaaataaagccctttgaattgaattgagagcgaaTAAGAATAGAGGGGGGGAGGACCCCGAAGTCTTTACCGACAATAGCCTACGGACCCGTTCCTCTGTCGGTTAGAAGAGACAGGAGTTAATGACCAAGTTTATAAATTATTTAACTCGGGGACTTTGGATATTTTCTCCCCCCGGAAAGGAACGCTGGAGCCCGAGACAGGAACCATCTCCAAGctgtcTGCAGTGGGTGGTCTCTCTGAGGTCCTCTCTGGACTGCCACTCAGTGTCTTCACTCTGGGAATCACGTCCGCTAccctactcctcccctcctccctcacgtcctcccccctcctccccccacacgtcctcccccctcctccccccacacgtcctcacccttcctcctccctcacgtcctctccctttctcctccctacctccatcacaACTCACCTCCTCCCCttgtacctcctcctccctccctgctctggaCCCCCCACCCCTCGGTCAGCAAGCCGAGCAGGGGGGGTCAGGGCGCCATGGTAACCCATAGCAGGCACGACCCCCCAGCCATGAGCAGCGTTACCCGCCCAGAGgccagaggtcaggggtcagacgTGGACCCCCTGCGCTACAAACCCTTCAGCTCGCACGCACACTACCAACAGGTGCTGTGTGCGGTGCGTAAGTTACAGGAGAGTGGGTTCTACTGGGGTGCAGTGGGGGGTCGTGAGGCCAGCGCTCTGCTCCGCTCCCAGCCCCCCGGGACCTTCCTGGTCCGAGACTCCTCCGACCACCACTACTTCTTCACACTGTCGGTCCAGACGGCTCGCGGGACCAAGAACCTCCGGATCCACAGCCAGGGGGGAAGCTTTTACCTGCAGCCTGACCCCCACTGCACGCACACGCCCCCGCGTTTCGACTGTGTGCTCAAACTGATTGGACACTAcatggggaaggagggaggtggaggaggagatggggaggccGGGGCCGGGGTAAGGACAGGGGGAGGCATGACTGCGGCTGCAGGGGAGACTGTGGGGACAGGGAGTTTGTATCTGATCCACTCAGGGGGAGAGAAGGTTCCGTTAGAACTGCGTcgacccctcccctcctccctgtcctccctccagcACCTGTGTAGAAGGACCCTGAACGGACACCTGGGGGGCCCGGATCCCCCCGACACACACCAGCTCCCTCACACTCTAAGAGACTTCTTGGCGGAGTACGATGCTcccatctaacacacacacacagttcatttTGGGGGTTTCCCCATCTAACGGTTGAGGATAGGATTTGgagagggtaagctgatcctagatcgaTGCTACTGCTTCCTATCAAGTGGAGCTTCATATAGGTAGCCATGGATACGCCTCTCCTGGAGAGACTGTCAATGGGAGTCAGGAAAACGCTGGGGGTCAGAAGTGATTGCCCTGTCAGCCAGTTAGTCATTTTCCCAGCGGAAGCTGTGATTGGATAGTCAAAAAGATTACAGTGACGCAGACCGTGAACGTGCTCACACGCAAGCAAACACACACTTTAGCAGTGACTTTAGGAGTGTTGTCAGAAGGTTTCCTGTGGGTTTGTTGTGCTGCTGAGGAACAGCTCTTTCTATTGATTAACAGAAGCttgcctctcctctttctcctgtctgacATGTAAAATGGGCTGactggattgagagagagagagggagatagagggagggatggaagtataatgagagaaaaggagagaggggatggggagtaTGGCAGAGAATGTCAAATGAGGGGCCCATAGCAgagtgaatgtgtttgtgtgcatggtgTCGTACACATTTCCACTGCTGCATGCCAACTAGCATGGCCTCATAGGAAGGTGTGAGGGATCATGGCTGACAACAGCCTCTAGCctcacacacagatagacacacacacaggcatacataCAGCTATACTGCAGTTTTGGAAGCTCTTCTGTTAGAATGTGATGGAGgtgcccctgtctctccctcttgtctttatccccccccccccacatatcTCTCTGACAACAGGAGTTGTGACAGTGAGTCTGAGCAGACCACTGTTAGTCAGACAAAAGCCCTGGCAGACAACCAAAGCTAACAGTGGATCTTATTATAGTCCcagggggcaggcaggcagacagacagacagacagggcgggcaggcaggcagacagacagacagacagggcgggcaggcaggcagacagacgacCGGaccgggcagacagacagacgaccggaccgggcagacagacagacggaccgggcaggcaggcagacagacagacgaaccgggcagacagacagacagacagacggaccgggcaggcaggcagacagacagacggaccggACCatgcgggcaggcaggcagaaacaACAACGTGTGTGccccaaatagcaccttattccttTTATAGAGAATTACTTTGGGACCCTGTGGACTCTGGTCcacaaaagtagttcactataggaAATAGGTTGAGATACCGGCAGAAACAACTACAACAGAACATAGTCAGAAGTCGAGTGGGAGAGGTTAGGAAAGGGTGAGGAAAGAGTGAGGAAGACAAGTAGGGGTGAGGCTGGGGGAGAGGTTAGAGATGGTTTTCAGACCACAGAGATGATGACAACCCCTTCATTTGGtctgatgatgatggtagtgatgatgataatgatagtgatgaagatgatgatgacgaAGACGTGATAATGATGATTTTGATGATTATGTAGTGTTAAGCTGAATCCATGTCTTCCTGATAGAAGTCTAATTAGTCATTTTTAACATTTACTAACAACATAATGTTTACATGTGTCGCATCAGCCCAGCTACATGTGAAGTACTCGTCTTTCATAAAGACTGCTCATAACCTCGCCACTAGACTGGCAGACAGGGAAAACTATCTGGAACAACAACAACTAAAAGCATTACAAAATAGAAATGAATAAAGGAATTTTGCACATATTTATATTTCTAAGATATTTCAATACGTAATATTAAAGCGCACTTTTCTTTTACCAAATTGAA

Function

NR:

description
suppressor of cytokine signaling 3-like

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956265.1 True 3509 mRNA 0.52 4 35819029 35826024

Neighbor

gene id symbol gene type direction distance location
LOC110499408 LOC106589827 coding downstream 251408 35561250 ~ 35567621 (-)
LOC110499402 LOC106589795 coding downstream 359284 35446811 ~ 35459745 (-)
LOC110499399 LOC106589794 coding downstream 386579 35429125 ~ 35432450 (-)
LOC110499397 LOC106589822 coding downstream 413418 35387849 ~ 35405611 (-)
LOC110499392 LOC106589818 coding downstream 508840 35273214 ~ 35310189 (-)
LOC110499416 dnah17 coding upstream 38627 35864651 ~ 35951415 (-)
LOC110499419 LOC106589836 coding upstream 125549 35951573 ~ 35985223 (-)
LOC110499420 NA coding upstream 160487 35986511 ~ 35993622 (-)
LOC110499423 NA coding upstream 205407 36031153 ~ 36037747 (-)
LOC110499424 LOC106589843 coding upstream 221053 36047077 ~ 36073126 (-)
G1689884 NA non-coding downstream 13934 35802908 ~ 35805095 (-)
G1689862 NA non-coding downstream 67592 35747962 ~ 35751437 (-)
G1689541 NA non-coding downstream 115112 35702650 ~ 35703917 (-)
G1689577 NA non-coding downstream 139610 35678563 ~ 35679419 (-)
G1689576 NA non-coding downstream 142373 35675818 ~ 35676656 (-)
G1689897 NA non-coding upstream 10091 35836115 ~ 35840578 (-)
G1689899 NA non-coding upstream 11350 35837374 ~ 35845747 (-)
G1689922 NA non-coding upstream 53013 35879037 ~ 35879273 (-)
G1689916 NA non-coding upstream 55475 35881499 ~ 35881806 (-)
G1689556 NA other downstream 175252 35643368 ~ 35643777 (-)
G1689461 NA other downstream 338972 35478114 ~ 35480057 (-)
G1689131 NA other downstream 558821 35259886 ~ 35260208 (-)
G1689130 NA other downstream 559211 35258989 ~ 35259818 (-)
G1687007 LOC106589782 other downstream 2274791 33531084 ~ 33544238 (-)
LOC110499427 LOC106612293 other upstream 294483 36120507 ~ 36125437 (-)
G1690367 NA other upstream 593692 36418789 ~ 36420600 (-)
G1690649 NA other upstream 876522 36702546 ~ 36703441 (-)
G1690696 NA other upstream 983675 36809699 ~ 36810143 (-)

Expression


Co-expression Network