LOC110499417 (LOC106589835)


Basic Information

Item Value
gene id LOC110499417
gene name LOC106589835
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 35837323 ~ 35866849 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576551.2
cgctGATAAACCCCACCGAAGAAGAAGAACGGCTGTAAAGATGGCGGCTCCCATAACGTGGAGGAGGCTGCGATACTGTGTGTCCACGCCGGCCCTGGCTGGGGTTTTCACTCGAATATCAGACCGATTCTTCCGTACACGCGATCGGAGGAGAGGgtcaTCTTTGTTGCTCCTAGCCCCTCTCCTAGCAGAGGCcgactcctctccccttcctctcttcagATCCCCCGGGTCGACTGGAGCTCAGGGCACCGATGGCCTCCATGCCCGCTTCCTTTGGATGGCAGAACATGTGCCCGCCTTCAGGGTGCCTGGCACACACATCCACATCCTCACCTCCCCTGACCAGTTTTACCAGGCAATGaagGCTCGAATAAAGACGGCTAAGAGGAGAGTGGTGATGGCCTCTCTGTATCTGGGTACAGGACCCCTGGAACAGGACCTGGTGGACTGTATGCAGGAAGCTCTGCAGCGTTCACGGGAGGTTGACAACTCCGACCTGCAGGTCTCCATTCTATTAGACTTCACACGCGGCTCACGAGgTCAGACTAACTCTAGGACCATGTTGCTGCCGTTGCTGCAGCAGTACAGCAGTCAGATGCGTGTGTCTCTGTACCATACCCCTGATCTGAGAGGGTTGCTCCGGCTCCTGGTCCCACAGCGCTTCAACGAGACCATCGGGGTACAGCACATAAAAGCCTACCTGTTTGACGATGACCTCATCATCAGCGGGGCCAACCTGAGTGACTCGTACTTCACCAACAGACAGGACCGCTATGTGCTCCTGGAGAACTGTTGGGAGGTGGCAGACTTCTTCTCTGATCTGGTGGGTGCCGTGGGAGACGTGTCATTACAGCTACAGCCTGACAACTCTGTCAGCATGATGGAAAACATGGTGCACCCCTACAGAGGTAACCGGGATGATTTCTCGGCGTCGGCCCGGCAACACATCATGGAGGTGGTGAACACTGCTCGTATGCGCCAAGACATCGCCAACTCGGAACGTTTGACGCGGGAGAGCAAGGGTgaagaagggggagggaaggaggacacTTGGGTTTTTCCTCTGGTTCAGATGAAACCTCTGGGAATACAGGTGGATGAGGAGATCACACAgCGTTTGCTGACAGATGCGGGTCCCGGTGCAACTGTGTTTCTGACGTCGGGGTATTTCAACCTGACAAGGGCCTACATGTCGCTGGTTCTGGGGGTGGGCGCCGACTATCGGATCCTCACCGCCTCCCCGGAGGTCAACGGGTTTTTCGGCGCCAAGGGCATTGCCAGGGAGATTCCAGCGGCCTACATCCACATTGCCAGACAGTTCTACAGCAAAGTGTGTCAGCTGGGACAGCAGGAGAGAGTTCACCTCCACGAGTACCACAGAGCACACTGGACCTTCCACGCCAagggGCTGTGGTACTACTTGCGGGGGCATGTGCGGCCGTGCCTGACTCTAATTGGCTCTCCAAACTTTGGCTACCGCTCGGTGCACCGGGACCTGGAGGCCCAGATCGCCATAGTAACAGAGAACCAGGAACTACAGGCCCACTTGCAGGAAGAGCAGGAGATGTTGTACCAGAGGTCTACAGAGGTGTCCAGCTCTACGTTCCAGCAGCCAGATCGCCATGTCAAGCTGTGGGTCAAATTGGTCACTCCCCTCATCAAGAAGTTCTTCTGAGAGAAACAGCCAAACAAAGGTCCCTTGCCACTGCTATGTGTACCAGCCCTCAACCTAGCCCACGGCCGCATCAACCTCAGAAGCTGAACCCAGCTACCTTTCTCCACtttactcccccctcctcctcaacgTCCCGTCTCTCTGAGAGAAACTGTCGGACCCATCTGGCCTTTGACCCCTCAGCATCAACATTCTGTAGTCAGCATCTGGACCCATTCGGGTGAGTGTGAGAGAAGTCATTCTGCTGACGGCTAGAGTAGGCGGTGTACTAGGCAGTGGGGTCAAAGGTGGCTTAGACGGGGGAAGGGTGGCTTATTGTGTGTGTTCTAACAGGGATGTAGACTTGCCTTACAGGAAGTATTTTCTTTTTATGGTGACGGTAAATGCTGAGGCGGAGGTGTCTCGTCACCACAATGTTACTCAGTGAGACAAATGGCCACTAAATGTCAGTGTGTGATCAGCTGCCGTGAGGGAACGATGACGGATGGGGCCACACATTCCTCGTCATACTCCACAAGCATCCAAATACATGAACAAAGATGTTATCTATCTATAGTTTGTTTTTGTTACTGTGTTGTTCTTGTAAATGAACACATTTTAGAAATGGAAATTAAAACACACACTTACAGTGGACATACACACTCTCACTGAGCATGTGAGGTGGGATCAGGGTCTGTTAACCCCGTGTCCCGGACCAGGTCAGTCATCTATAGATGAACATCCATCCTCCTTCCTGCCACCCAGAAACAGCCCTAGTATCCACTGGCGTAACGCAGTTTCTCTGGAACCCCCCTGTAaagtcagagcccccccccccccaaagtatAAAGTAAAAGTATATCAAAGTATAGAATACCGTCCACGGTGATTAAATTGCGACATGTCTATACGGATGGATGCTTATTGAAACGATTTTATAGGGTTTCTGTGGTGCCATGGCGTAACTTTGCTTTAGCTAATGTATAAATGTTTACTGGTAGGCCTATTTGGTTGTCATTTTCTCACGTTAAGCACGCTGTCACAATGCTGCCATTTGTAGCTTGCTGGCTGGTGGCAATATAATTACTTATTCTGTAAAATTATAAATGTTTGATGAAACCGCATACTAATCAgctaccatatatatatatatatatatatatatatatatatatatttgattatACAACTGTCCTGTATAGGCTACCTGAATCTGCATGACATGAACCCTCCTTGTACTCTCTCCTAGCTTGGATAGAAAGTTGTGCGTAAAACCAGTCTTGATGCCAAAATGATAGTTGGTCCACCTTCAAAACACTAGCTTACTAGGGATTGTTTCATTATGCAGTGTACTATCTATAgctttacagtgccttcggaaagtattcagaccctttgactttttccacattttgttacgttacagccttattcgttTTTTTAtacccctcaatctacacacgcTACCCCATAAGGTTTTTAGACGTTTGCTAATATATTACAAATAAAGGAAAtcatatttacgtaagtattcagaccctttactcagtactttgttgaatcatctttggcagtgataacagcctctagtcttcttgggtatgatgctacaagtttgg
>XM_021576550.2
cgctGATAAACCCCACCGAAGAAGAAGAACGGCTGTAAAGATGGCGGCTCCCATAACGTGGAGGAGGCTGCGATACTGTGTGTCCACGCCGGCCCTGGCTGGGGTTTTCACTCGAATATCAGACCGATTCTTCCGTACACGCGATCGGAGGAGAGGgtcaTCTTTGTTGCTCCTAGCCCCTCTCCTAGCAGAGGCcgactcctctccccttcctctcttcagATCCCCCGGGTCGACTGGAGCTCAGGGCACCGATGGCCTCCATGCCCGCTTCCTTTGGATGGCAGAACATGTGCCCGCCTTCAGGGTGCCTGGCACACACATCCACATCCTCACCTCCCCTGACCAGTTTTACCAGGCAATGaagGCTCGAATAAAGACGGCTAAGAGGAGAGTGGTGATGGCCTCTCTGTATCTGGGTACAGGACCCCTGGAACAGGACCTGGTGGACTGTATGCAGGAAGCTCTGCAGCGTTCACGGGAGGTTGACAACTCCGACCTGCAGGTCTCCATTCTATTAGACTTCACACGCGGCTCACGAGgTCAGACTAACTCTAGGACCATGTTGCTGCCGTTGCTGCAGCAGTACAGCAGTCAGATGCGTGTGTCTCTGTACCATACCCCTGATCTGAGAGGGTTGCTCCGGCTCCTGGTCCCACAGCGCTTCAACGAGACCATCGGGGTACAGCACATAAAAGCCTACCTGTTTGACGATGACCTCATCATCAGCGGGGCCAACCTGAGTGACTCGTACTTCACCAACAGACAGGACCGCTATGTGCTCCTGGAGAACTGTTGGGAGGTGGCAGACTTCTTCTCTGATCTGGTGGGTGCCGTGGGAGACGTGTCATTACAGCTACAGCCTGACAACTCTGTCAGCATGATGGAAAACATGGTGCACCCCTACAGAGGTAACCGGGATGATTTCTCGGCGTCGGCCCGGCAACACATCATGGAGGTGGTGAACACTGCTCGTATGCGCCAAGACATCGCCAACTCGGAACGTTTGACGCGGGAGAGCAAGGGTgaagaagggggagggaaggaggacacTTGGGTTTTTCCTCTGGTTCAGATGAAACCTCTGGGAATACAGGTGGATGAGGAGATCACACAgCGTTTGCTGACAGATGCGGGTCCCGGTGCAACTGTGTTTCTGACGTCGGGGTATTTCAACCTGACAAGGGCCTACATGTCGCTGGTTCTGGGGGTGGGCGCCGACTATCGGATCCTCACCGCCTCCCCGGAGGTCAACGGGTTTTTCGGCGCCAAGGGCATTGCCAGGGAGATTCCAGCGGCCTACATCCACATTGCCAGACAGTTCTACAGCAAAGTGTGTCAGCTGGGACAGCAGGAGAGAGTTCACCTCCACGAGTACCACAGAGCACACTGGACCTTCCACGCCAagggGCTGTGGTACTACTTGCGGGGGCATGTGCGGCCGTGCCTGACTCTAATTGGCTCTCCAAACTTTGGCTACCGCTCGGTGCACCGGGACCTGGAGGCCCAGATCGCCATAGTAACAGAGAACCAGGAACTACAGGCCCACTTGCAGGAAGAGCAGGAGATGTTGTACCAGAGGTCTACAGAGGTGTCCAGCTCTACGTTCCAGCAGCCAGATCGCCATGTCAAGCTGTGGGTCAAATTGGTCACTCCCCTCATCAAGAAGTTCTTCTGAGAGAAACAGCCAAACAAAGGAGGCAGACAGCGGCCAGTACCCACTTGGCAGGCTTCTCCTTGGTCTTGAGGTTGAAGGTCCAGATGAAGGTGGGACCCCTCATGCGGGTCTTGTAGACGGGACACTCATACACGTTCTTGGTCTCCTGTCGGTCCACCGGTACCGCCTTGATGAAGATCACCGGCATGTTGGGGGTCAGCTCCTTCAGACGAGCATCCGCTATCAcccctgtctgtgtgtcccaGCGTGCCCCTGTACATacacaaccagacacacacatacctactgtaaaaaGTTTAACTCTAAACATATAAAAACGTCATCTCTCCACAATGAGACTGTATGgttgtgtatatctacagtactgtacaaaTGGACCACTTAGTTATTAATGCCTGAGAAAAAGCAGTGTTTTTGTGGTGGAAACTAGTTTTCCATTAACTACAAACATTAATATGCTGAGTACATGTTGTCAGCAGGAGGAACGTTACTACAGGATGTTTTGTACATTCCATATCCATTAGTTTTGTATTGACAATGGAATCTGGTACATGATGAGAGTAGTGTGTGGGTCTGAAGGTGAAGACACAAACTGTGTGTGTGACGGTGACTAGACAGCCCGCTATCTGTGGAGTTTTGAGATCCTTGGAGGAACCTTAAGAACAGTTGAGAGGAGAACTGATCTAGCAGTGTTTACTATGGTATTCTAACCAGCTCATCCAGTGAGTCATCCCAGGAACTGAACTTGAAAGTAAGTTggaatagtagaatgcacaaggtgcgatttagaaattgggtagtgcatcagttcctcttgtcatgtcagtcattccATATCTTAGACAGCCATTTattcagaaatgtccagatcaactagcccatagATTTTATTGTAATATTTGGGAACTCCTGTGCTAACCAGCTCACAGTGAGGCACCCCAGAAACTGAActgggcactgtgtgtgtgtggatggatgacTCTGTAACCTAAAAGATCATTAtgattatttgttttgtttttttgttaatggTTTAAAGGTTTGACTGCACCTGATGTGTGTTATTGACTGACTTCCTCTCCAGGAGATGGATGCTAATGGATAAAATTGCCGCAAAGTGTTATACAGTGTATCACTTTGGAGATTAAAAAAAATCCGGCATggca

Function

NR:

description
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial-like

GO:

id name namespace
GO:0008654 phospholipid biosynthetic process biological_process
GO:0016780 phosphotransferase activity, for other substituted phosphate groups molecular_function

KEGG:

id description
K00995 pgsA, PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576551.2 False 3276 mRNA 0.50 10 35837323 35853921
XM_021576550.2 True 2844 mRNA 0.51 10 35837323 35866849

Neighbor

gene id symbol gene type direction distance location
LOC118942012 LOC106589797 coding upstream 135167 35701200 ~ 35702156 (+)
LOC110499414 pbld2 coding upstream 157893 35675782 ~ 35679430 (+)
LOC110499413 LOC106589831 coding upstream 164380 35662508 ~ 35672943 (+)
LOC110499412 LOC106589830 coding upstream 174902 35651667 ~ 35662421 (+)
LOC110499411 rufy2 coding upstream 196155 35622634 ~ 35641168 (+)
LOC118942471 NA coding downstream 17331 35884180 ~ 35884233 (+)
LOC118942065 NA coding downstream 104375 35971224 ~ 35975420 (+)
LOC110499421 LOC106612362 coding downstream 154250 36021099 ~ 36028246 (+)
LOC110499422 arl3 coding downstream 170873 36037722 ~ 36046077 (+)
LOC110499426 LOC106589844 coding downstream 258654 36125503 ~ 36157782 (+)
G1689615 NA non-coding upstream 76111 35760988 ~ 35761212 (+)
G1689610 NA non-coding upstream 108160 35728961 ~ 35729163 (+)
G1689592 NA non-coding upstream 127491 35709614 ~ 35709832 (+)
G1689587 NA non-coding upstream 130095 35706653 ~ 35707228 (+)
G1689345 NA non-coding upstream 132044 35702213 ~ 35705279 (+)
G1689598 NA non-coding downstream 13236 35880085 ~ 35880513 (+)
G1689672 NA non-coding downstream 16719 35883568 ~ 35883939 (+)
G1689676 NA non-coding downstream 22752 35889601 ~ 35889827 (+)
G1689681 LOC106589838 non-coding downstream 29366 35896215 ~ 36066349 (+)
G1689758 NA non-coding downstream 131846 35998695 ~ 36000062 (+)
G1689347 NA other upstream 154886 35681367 ~ 35682437 (+)
LOC110499396 LOC106589821 other upstream 452757 35381609 ~ 35384567 (+)
G1687675 NA other upstream 1511069 34325837 ~ 34326254 (+)
LOC118942060 LOC106589768 other upstream 2652047 33177293 ~ 33196167 (+)
G1689671 NA other downstream 14729 35881578 ~ 35881874 (+)
G1689732 LOC106612293 other downstream 253767 36120616 ~ 36125390 (+)
G1690092 NA other downstream 397811 36264660 ~ 36264981 (+)
G1690099 NA other downstream 408633 36275482 ~ 36275943 (+)
G1690116 NA other downstream 438090 36304939 ~ 36312698 (+)

Expression


Co-expression Network