LOC110499422 (arl3)


Basic Information

Item Value
gene id LOC110499422
gene name arl3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36037722 ~ 36046077 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576562.2
GCTAAGTGGCGTGCCCTAGTTTACGCCCACACCTGTTGTGTTCTCGCGTGAACTTGTGTCCCACGTCATCGCCCCCTACTAGGGGCCCTAGTAACATCGGTGGCGTCTTGGAGAGATAAAGCAACAAGATGGGTTTGCTGTCAATCCTTCGGAAGCTAAAGAGCACACCAGATCAGGAGGTTCGGATCTTGTTGCTGGGTTTGGATAACGGGGGAAAGACCACTCTGCTGAAACAACTGGCCTCCGAGGACATCAGTCACATCACCCCCACACAGggcttCAACATAAAGAGTGTTCAGTCTCAGGGTTTTAAGTTGAATGTGTGGGACattgggggacagaggaagatcAGACCCTACTGGAGAAACTACTTTGAGAACACTGATGTGCTGATTTACGTCATCGACAGTGCAGACAGAAAAAGATTTGAGGAGACGGGGCAGGAGCTGGCTGAGCTGTTGGATGAGGAGAAGCTGAGTGGGGTTCCAGTGCTGATATTTGCCAACAAGCAGGACCTGTTGACTGCAGCCCCAGCCTCTGAGATCGCTGAGGGACTTAACCTGCACACCATCCGGGACCGCGTCTGGCAGATCCAGTCCTGCTCTGCCCTCACCGGGGAGGGGGTACAGGACGGAATGAACTGGCTCTGCAAGAGTGTCAATGCTAAGAAGAAGTAGCACAGATGTCCGTTTTCACACACCCTGAGCCTTTGGGAGGACagggtgtacctgtgaatgtacaCACTACATCAACATGGACTTGAAGAGAGTTTTTAACCGCCTGGCTGGCCTCTACACATTGTTTACTAAACTACAACTCTCGCTAGAACTACAACTTCCATGTTGCTCTTCAAAATTGAGTGGGGGTACAAAGGGAACTCATCCCAGGAGACCAGAGACGCCCCTCCCCGTCCTAACCATCCCACCTCCACCCTGTCAAGACATTCCACCCCAGCCTAACCATCCCACCTCCACCCTGTCAAGACATTCCACCTCAGCCTAACCATCCCACCTCCACCCTGTCAAGACATTCCACCTCAGCCTAACCATCCCACCTCCACCCTTTCAAGACATTCCACCCCAGCCTAACCATCCCACCTCCACCCTGTCAAGACATTCCACCCCAGCCTAACCATCCCACCTCCAGCCTGTCAAGACACTCCACCTCAGCCTAACCTTCCCACCTCCACCCTGTCAAGACATTCCACCTCAGCCTAACCATCCCACCTCCACTCTGTCAAGACATTCCACCCCAGCCTAACCATCCCACCTCCACCCTTTCAAGACATTCCACCTCAGCCTAACCATCCCACCTCCACTCTGTCAAGACATTCCACCCCAGCCTAACCATCCCACCTCCACCCCTTCAAGACACTCCACCCCAGCCTAACCTTCCCACCTCCACCCCTTCAAGACACTCCACCCTAAGACATTCCAGATCTTGATACTGTCCTTCACCACAATATTAGCCTATTCACTCACTCTTTACAGGTTGCCCTGGAAACccagctctctcttctctctctctcctagcttGGGTGCCAGTCTCGTTAGCTTACATTCCtctccttgtactctgtgtcatatTCCAAAGCATGACAGGACTGGATTGATAGCCAAAGAGACTGTTATCCAGActacctttctccccctctcattctttctcatcactctctccctcatatTCTACTTCATTCAGTTGTTGTTTTTAATTCCATGACAAGCTCCTTTCTTTCTGCAGTTCTGTTTTGAAGTGAGGTATATTTTTGTAATTCTTTATTTATGGTGAAGTAGAGGGTAATAGCGTACTGTGAGATGCTCGCAAACAACAGAAACAGTGTGTGGTTACTAGGACGACAGGGAAACATTGAATACTGTGCTTTACTCccctgtgtaaagggttagggttagggttacgcgtgttaatatgtaaaaaaataaataaaatattcaaaaataaataaataagatatATAACAAGACAAATAAACACACTTTAGGGCtaatctgaaatggcaccctgttaccTAAACAATGAACTAGGTTCGGCCACAGCGCATTTGAGTAGAGCTCTACACAGcgaatagtgtgccatttcggACAAAGCCTattcaatcaaatggaaaaaataaaacaattttgaTGATCAATTAAGCAATAAAGCAcgaaggggtgtggtatatggacaatataccactgcttagggctgttcttaggcacgacgcatcgcagagtattggccatataccacaaacccccgaggtgccttattgctgttataaactggttaccaacgtgattagagcagtaaaaatacatgttttgtcatacccgtggtatacagtctgatataccatggctgtcagccaatcagcatttagggCTCAAACCACCCCGTTTATAATTGTATATAACCCCTATTCATATGTTATGTGCATATAGTAGAGTGCGTATTAGACCTGTACTATGTAATCTATCATATCTGCATATGTCATAGGTGTTGATCGATTTTAACAGGGTGTATGACAAAGTTTTTCTCGTGTGATGCATTGTCTTTGGTTTTAGAGGGCATTTTCACAAAAGGCTTTTTCCTTTTGAATGTGATCTGTCCAAGGATTGAAGGTACGTGAATAAAATGTGAGGGGGAAAAAAGAGAGCATTGTTTTCTGACCTGGCTGTAGAGTGGTAGTATAAAGAGGCCTCAGCCAAAACACACATAGTTCTGTGAGATGTCCTGTGGAGGACTCCACCACTTTACCCCAAACAACACCGCCACCTGCCCAGACCCATGTCATTGCCAGTCCCTGGAGACCCCACACCAGAGCCCTCTCCAAAACACTAGTGCCACACACACGGCAGGTGGGGTCAGCTGATTTTGACATTTACAGGGCCCAGCTGGTCGGGCCCATGAATGggcctgctctctctgtgtgagtgtgtgtttgtcgtGGCTCGCAGCCTTTACAGTTAGCCTAACCACTCTACCACATTTGACTCCTACAGGCCTATGTTTAAGTACTAAAGTCAGACCATAGCTGTTTTTTGGTTGGTTCAGGCCTGCTGCACATAGTTGTGGGTGTGTCACATCTGCTACAGGGGAGAGAGCACTGGCCATAAAACACTGGCGTCCAGCTGTGTGTGAGCGAGAAATGCATTCTGAGGGCCTGTGGCTGTGGGACTATAAAATGTCTCTGCTCTTACAAAGACTCATTGTGAAACTCTTCTTTCTCTCGCCTCCTCTCGATTCCTACATGGGCCACAGGCACTGTGTGATTTTATATGCTGCTAACTGAATGTGACTTTCCATCAAAGTGTCTGATAAATGAGATCTTTATTGTTTGCTTAGAGACGTTAATCAACATGTCTTTAAATCTCTGGGCACAGAGaggctacgtcccaaatagcacccgaTGTCCAAccctatgggttctggtcaaaagttgtgcacgacaaagggaatagagtgccatttgggcaCAGAGCCAGGGAGAAATCTAAGGCCTGTTATCTTCTACACAAGTCTGTTTGTGTTCTCTCATTCAGAGCTTTCAAAGTTCTGTGGTTGTTTTATCTGTGCATagaagtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggcaacgCGAGGAGCCAGACGGGGGAGTGTGATGCCTATCTTTGTGAGGCGACAGGATTGCTGCCTTTTTTCTCCTTGTGATTCAGACAGCTGTTcgacagctgtgtgtgtttgagagaaagagagaaaccaatCACCACGCTTCACACAGGCCCCTCCTTTCTCTTCAACTCACCATGGCTGAGTTACTATGATGACAGATGAGACAAGAAACAGATTTCGTATCCCGTCAACAGATAGTAAAGAGGTGGGCGTTGCGCAGAAGGTGAATACATAAGAATGTGCATCACTTTAAAGTGTGTTAAGATAAATCAAACCATACACTCATTGTTTAGTGGTAATACAGTCTTGGGGGTaatggagtcttgtgagtgaagaCGTGTCCATTGTCTTTCCCACCGGTCTCCTGGGCTTTTTGCTTCCTTTGTGTTTTTGGTATGTTTTAAGTTGCATGGTTGTGAATATGTTCCCGGGCCAGAGGCCACCCTGAAAAGGTGAACTTGTGAAAGAAACCATGCcttaattaaataaatgtttgaaAATCA

Function

symbol description
arl3 Enables GDP binding activity; GTP binding activity; and microtubule binding activity. Involved in several processes, including cilium assembly; protein localization to cilium; and small GTPase mediated signal transduction. Acts upstream of or within post-Golgi vesicle-mediated transport. Located in several cellular components, including microtubule cytoskeleton; midbody; and photoreceptor connecting cilium. Implicated in Joubert syndrome and retinitis pigmentosa 83.

NR:

description
ADP-ribosylation factor-like protein 3

GO: NA

KEGG:

id description
K07944 ARL3; ADP-ribosylation factor-like protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576562.2 True 4171 mRNA 0.47 6 36037722 36046077
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110499421 LOC106612362 coding upstream 9476 36021099 ~ 36028246 (+)
LOC118942065 NA coding upstream 62302 35971224 ~ 35975420 (+)
LOC118942471 NA coding upstream 153489 35884180 ~ 35884233 (+)
LOC110499417 LOC106589835 coding upstream 170873 35837323 ~ 35866849 (+)
LOC118942012 LOC106589797 coding upstream 335566 35701200 ~ 35702156 (+)
LOC110499426 LOC106589844 coding downstream 79426 36125503 ~ 36157782 (+)
LOC110499428 LOC106589848 coding downstream 115126 36161203 ~ 36170899 (+)
mrpl27 LOC106589850 coding downstream 127111 36173188 ~ 36179601 (+)
LOC110499432 LOC106589856 coding downstream 161301 36207378 ~ 36247512 (+)
LOC118942466 NA coding downstream 377669 36423746 ~ 36423861 (+)
G1689758 NA non-coding upstream 37660 35998695 ~ 36000062 (+)
G1689676 NA non-coding upstream 147895 35889601 ~ 35889827 (+)
G1689672 NA non-coding upstream 153783 35883568 ~ 35883939 (+)
G1689598 NA non-coding upstream 157209 35880085 ~ 35880513 (+)
G1689615 NA non-coding upstream 276510 35760988 ~ 35761212 (+)
G1689736 LOC106589843 non-coding downstream 1121 36047198 ~ 36050269 (+)
G1689783 NA non-coding downstream 6071 36052148 ~ 36053007 (+)
G1689737 NA non-coding downstream 9138 36055215 ~ 36061876 (+)
G1689809 NA non-coding downstream 54465 36100542 ~ 36102150 (+)
G1689817 NA non-coding downstream 69101 36115178 ~ 36115479 (+)
G1689671 NA other upstream 155848 35881578 ~ 35881874 (+)
G1689347 NA other upstream 355285 35681367 ~ 35682437 (+)
LOC110499396 LOC106589821 other upstream 653156 35381609 ~ 35384567 (+)
G1687675 NA other upstream 1711468 34325837 ~ 34326254 (+)
G1689732 LOC106612293 other downstream 74539 36120616 ~ 36125390 (+)
G1690092 NA other downstream 218583 36264660 ~ 36264981 (+)
G1690099 NA other downstream 229405 36275482 ~ 36275943 (+)
G1690116 NA other downstream 258862 36304939 ~ 36312698 (+)
G1690753 NA other downstream 831974 36878051 ~ 36880738 (+)

Expression

LOC110499422(arl3) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
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LOC110499422(arl3) Expression in each Bioproject

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LOC110499422(arl3) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network