LOC110499425 (LOC106589847)


Basic Information

Item Value
gene id LOC110499425
gene name LOC106589847
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36084938 ~ 36109840 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576564.2
ACGCACCATGGCCCATGACTGGCGCACACGTGAAACCTGGCAAGTGGCCAAGGGGGCAAGAGAGAGGCAAAACAGTTCAGCGCAAAACAGTTCAGCGCATCCCACCACGACCAAATACTTCTTTCATTATATTGCTATAGTCCGTTTTCAGTGTACCTAGGTagatcctctttctctctcttggaaaTGACAGCTCGACTACGGAGAGTTATGCCCTTGGCGCTGGTGGTTGTCATGTGCGCACTGATCTATGTGCTTCTGTATGGACACATCTCTGAAGACAGCATCGGGATCCGTTTCTACGGTGATGGAAACATTGTGGCTGTCTATGACACATCTAAAAGGTGGAGCTTGCCCGCATGGTTGAAAAACTTCCACTATGCCTCCAATGTGGACTTAAATATTAATATAACTGGGAAAACTGCAGCTGGTAACTTCACAGCAATCACAACCAAAGAAAAAAGTAATTCCGTGACGACTGACCCAACAACTTTAAAACAGACCGTAAAACAGACAAATGGATTAACAGGTGGACCCGGGTCTACACACAAGGAGACCCCTATGCTCCCCCTGCAAAAAAAGGACTTCGAGCAATATCCCGACTGGGATTTTGAGGATGTTTACATCCGGGACAAGCAACCGAGACAGACGGCCTGTCCCCATTCTCTGCGGAACTCCAAGGACCCAGGCTTCAAGCAGGCCTTTATACCAGACGTCCAGTTGTACCTCCACGGTGAACTACTCAACGTGCCAGAGTGGAACAGGCTAGCTCACTTCAATAACCCCTTTGGCTTCATGGAATACACAAACTACacagAGATCAAGGCAGTGGTGGACCTGATCCCCAAGCCAAGAGAAGCCCTGCTCCTGCCGCGGGGGAACCTCAAGTGTATTCGCTGTGCTGTGGTGGCCAACGGAGGAATACTCAATGGCTCTCGGATGGGGAAGGAGATCGATGCCCATGACTACGTGTTccggaTGAATGGTGCCGTAACCAAGGGTTATGAGGAGGATGTAGGTAATAGAACGTCGGTGTACATTCACACCGCCCACGCCATCACCGAGTCTCCTTATCTATTCCATGAATATGGCTACAACAATGCACCTCATGACGAGGGTATAAAGTATGTGCTGATTCCAGAGGGGCTGAGGGATTTCCAGTGGCTACAGGGTCTATTTGGGAAGACACTAGTCTCTAAAGGACCCTACAAGGACAGACAGCCGTGGAAGGCCTACTCAGGACAATTTGATGAGACCCGCTTCTATGTTCTTCACCCTGACTTTCTCAGATACATCCGCAAAAGGTTCATGTGGTCCCAGGAGATGAAGAGTTCATTGTGGTCTATATTCAGACCTACTAACGGAGCATTCACACTCTTCCTGGCCCTGCACACCTGTGACATGGTGGATGCGTATGGATTTATCACAGAGGACCACGATAAATATCCCAACTACTATGTTGAGAGGAACTCTAAAACCAAAGTCATCTTCTACTCTAATCACGACTACAACCTAGAGATTAAGACCTGGAAGAAACTACATGACACCAAGATCATCTGGCTTTATCAGAGACAGGAGGACCCAGAGGGAAAGACAGGCAAAACAAAACAACCATaaaaccctgtctgtctgcagaGGTGGACAAAGATACATCAAAATGTGTCTGTTACAAAATACCCTAAAGAACAATTGTAATGGGGAAATGTAAGATCAATAACGTTCATATTTAGTTGTGTGGTTAACACAATGTTAACAAATTGATATATTGTTCCTTTCTGTAATATACATGATTTCCAGTGTTCTGTTTGTGAATCTCGGGTTGATGGTGGTCACTAGACTCCATGCTGTATGTTATGGATTAAACTCATAATAGTCAACCCAGGGACtgtggttgaaaattagccggctggctaaaccTGCAATTTCACTGAAACGTTGATTATTAATGTGCACTATccttgtaaaaaaaattaaaaatataa

Function

NR:

description
alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1-like

GO: NA

KEGG:

id description
K03479 SIAT7A, ST6GalNAc I; alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase (sialyltransferase 7A)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576564.2 True 1982 mRNA 0.46 9 36084938 36109840

Neighbor

gene id symbol gene type direction distance location
LOC118942465 NA coding downstream 5968 36078855 ~ 36078970 (-)
LOC118942470 NA coding downstream 8750 36076118 ~ 36076188 (-)
LOC110499424 LOC106589843 coding downstream 11812 36047077 ~ 36073126 (-)
LOC110499423 NA coding downstream 47227 36031153 ~ 36037747 (-)
LOC110499420 NA coding downstream 91316 35986511 ~ 35993622 (-)
LOC118942067 NA coding upstream 5738 36115578 ~ 36117417 (-)
LOC110499427 LOC106612293 coding upstream 10771 36120507 ~ 36125437 (-)
LOC110499429 LOC106589855 coding upstream 72940 36181083 ~ 36196450 (-)
LOC110499540 LOC106589857 coding upstream 150000 36258019 ~ 36336452 (-)
LOC110499433 LOC106589859 coding upstream 234414 36344254 ~ 36387672 (-)
G1689916 NA non-coding downstream 203132 35881499 ~ 35881806 (-)
G1689922 NA non-coding downstream 205665 35879037 ~ 35879273 (-)
G1689899 NA non-coding downstream 239191 35837374 ~ 35845747 (-)
G1689897 NA non-coding downstream 244360 35836115 ~ 35840578 (-)
G1690063 NA non-coding upstream 76761 36186601 ~ 36187944 (-)
G1690065 NA non-coding upstream 83813 36193653 ~ 36193996 (-)
G1690257 NA non-coding upstream 136279 36246119 ~ 36247511 (-)
LOC110499416 dnah17 other downstream 218154 35864651 ~ 35951415 (-)
G1689556 NA other downstream 441161 35643368 ~ 35643777 (-)
G1689461 NA other downstream 604881 35478114 ~ 35480057 (-)
G1689131 NA other downstream 824730 35259886 ~ 35260208 (-)
G1689130 NA other downstream 825120 35258989 ~ 35259818 (-)
G1690367 NA other upstream 309876 36418789 ~ 36420600 (-)
G1690649 NA other upstream 592706 36702546 ~ 36703441 (-)
G1690696 NA other upstream 699859 36809699 ~ 36810143 (-)
LOC110499438 LOC106589865 other upstream 783707 36891846 ~ 36896982 (-)

Expression


Co-expression Network