Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110499426 |
| gene name | LOC106589844 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048584.1 |
| NCBI id | CM023238.2 |
| chromosome length | 46616863 |
| location | 36125503 ~ 36157782 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: RING finger protein 157-like isoform X1 |
| id | description |
|---|---|
| K25192 | RNF157; E3 ubiquitin-protein ligase RNF157 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036956274.1 | False | 4044 | mRNA | 0.50 | 18 | 36125503 | 36157782 |
| XM_036956281.1 | False | 2790 | mRNA | 0.54 | 18 | 36125744 | 36155883 |
| XM_036956280.1 | False | 2762 | mRNA | 0.54 | 18 | 36125745 | 36155881 |
| XM_036956275.1 | False | 4627 | mRNA | 0.50 | 17 | 36125746 | 36157782 |
| XM_036956277.1 | False | 2898 | mRNA | 0.54 | 19 | 36125750 | 36155883 |
| XM_036956276.1 | False | 2868 | mRNA | 0.54 | 19 | 36125753 | 36155881 |
| XM_036956282.1 | False | 2715 | mRNA | 0.54 | 18 | 36125753 | 36155881 |
| XM_036956279.1 | False | 4579 | mRNA | 0.50 | 17 | 36125755 | 36157782 |
| XM_036956272.1 | False | 4723 | mRNA | 0.50 | 18 | 36125758 | 36157782 |
| XM_021576566.2 | False | 4722 | mRNA | 0.50 | 18 | 36125765 | 36157782 |
| XM_036956273.1 | True | 4670 | mRNA | 0.50 | 18 | 36125778 | 36157782 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110499422 | arl3 | coding | upstream | 79426 | 36037722 ~ 36046077 (+) |
| LOC110499421 | LOC106612362 | coding | upstream | 97257 | 36021099 ~ 36028246 (+) |
| LOC118942065 | NA | coding | upstream | 150083 | 35971224 ~ 35975420 (+) |
| LOC118942471 | NA | coding | upstream | 241270 | 35884180 ~ 35884233 (+) |
| LOC110499417 | LOC106589835 | coding | upstream | 258654 | 35837323 ~ 35866849 (+) |
| LOC110499428 | LOC106589848 | coding | downstream | 3421 | 36161203 ~ 36170899 (+) |
| mrpl27 | LOC106589850 | coding | downstream | 15406 | 36173188 ~ 36179601 (+) |
| LOC110499432 | LOC106589856 | coding | downstream | 49596 | 36207378 ~ 36247512 (+) |
| LOC118942466 | NA | coding | downstream | 265964 | 36423746 ~ 36423861 (+) |
| LOC110499434 | LOC106589860 | coding | downstream | 279423 | 36437205 ~ 36540905 (+) |
| G1689818 | NA | non-coding | upstream | 9635 | 36115589 ~ 36115868 (+) |
| G1689817 | NA | non-coding | upstream | 10024 | 36115178 ~ 36115479 (+) |
| G1689809 | NA | non-coding | upstream | 23353 | 36100542 ~ 36102150 (+) |
| G1689779 | NA | non-coding | upstream | 34516 | 36039961 ~ 36090987 (+) |
| G1689771 | NA | non-coding | upstream | 40002 | 36024248 ~ 36085501 (+) |
| G1689835 | NA | non-coding | downstream | 2157 | 36159939 ~ 36160239 (+) |
| G1689843 | NA | non-coding | downstream | 27398 | 36185180 ~ 36185495 (+) |
| G1689845 | NA | non-coding | downstream | 30509 | 36188291 ~ 36188507 (+) |
| G1689849 | NA | non-coding | downstream | 38325 | 36196107 ~ 36196451 (+) |
| G1690078 | NA | non-coding | downstream | 90026 | 36247808 ~ 36248254 (+) |
| G1689732 | LOC106612293 | other | upstream | 113 | 36120616 ~ 36125390 (+) |
| G1689671 | NA | other | upstream | 243629 | 35881578 ~ 35881874 (+) |
| LOC118942012 | LOC106589797 | other | upstream | 423364 | 35701200 ~ 35702156 (+) |
| G1689347 | NA | other | upstream | 443066 | 35681367 ~ 35682437 (+) |
| LOC110499396 | LOC106589821 | other | upstream | 740937 | 35381609 ~ 35384567 (+) |
| G1690092 | NA | other | downstream | 106878 | 36264660 ~ 36264981 (+) |
| G1690099 | NA | other | downstream | 117700 | 36275482 ~ 36275943 (+) |
| G1690116 | NA | other | downstream | 147157 | 36304939 ~ 36312698 (+) |
| G1690753 | NA | other | downstream | 720269 | 36878051 ~ 36880738 (+) |
| G1691142 | NA | other | downstream | 1384138 | 37541920 ~ 37543265 (+) |
