LOC110499428 (LOC106589848)


Basic Information

Item Value
gene id LOC110499428
gene name LOC106589848
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36161203 ~ 36170899 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576569.2
TGTATCTTTCTATCAATGACGTGGACTTTCATTGTAAGAATTTACTGCAGCCTTGCTGCTTTACACACAATATATTTGTCTGCGATATAATCGCATGCTACGACTATTTTGACAATTGTCTATAAAGTAGCCATTATTGTAGTATTTATTAGTAGGAATAGAAGGTCTGAGACGTTTGAAAACGGTGGTGATTTCTCAGTGAAACAGCCCCCCACCCAAAACTCAGGATGAGTAAAAACAAGGTGTTGAATCTGAAGGACAAAGTCGATGGCAACGAGATGGATCTGAGCCTATGTAACCTCACTGAAGTTCCTGTTAAAGAACTGGCTGCCTTCCCGAAAGTTACAGTCCTGGATCTGTCCTGCAACAACATCACCTCCCTGCCTctggAATTCTGCAGCCTGAGCCACCTGGTCAAGGTGGACCTCAGTAAGAACCAGCTGACTGTTCTACCTGATGATCTGGGTCGCCTTGGCAACCTGCAACACCTGGATCTGTACAACAACAAGCTGACCATTCTGCCAGTCAGCTTCTCACAGCTCAAGAACCTGAAGTGGCTGGATCTGAAGGACAACCCTCTGGaaatcaacctggccaaggctgcAGGAGACTGTCTGGATGAGAAACAGTGTAAACAATGTGCTGCCAAGGTTCTCCAGCACATGAGGATCCTTCAGGAAGAGGTAGACAAAGAGAGGGAGCGGCGCCTCCTAAAGGACAAAGAACTGGAAAAGAAGAAAGAgacgaaacagagagagagggaggcgaaAGAGAGGGAGGCTCGTAAACGAGAGAAggcagaggggaaggagaggaagaggaaggagtaCAACGCTCACATGGCTGCCTTAGCTGTCCAGGAACAGAAGAataagagaaaggaggagaagaaaaagCGGAATGGACAGATGGCAGCAGataaGAAAGCAGCAGCTGAATCCACCCCCAAAGCCCAAAGACGTTCTCTCATTGGCGTGCTTTTCAAGCTCCTCCTCCTGGTGCTGCTGGGATTGGCTGGAGTTGTCGGGGTATGTCATCTGACCGGGCTAAAGGAGGAGGCGGTGTGCGCGCCAATCAACATTGCTGTGGATGACGGCCTATCCTGGATCCGGGAACATGAAGTAGATGTGAGGGTCAGAGAGCTGGTACAGGAAGTTGATATCAGAGCCAGAGAGCTGCTGCAGAAACTAACCTCTCTGGCGCCGCATTTCCTCGAACCGCTCGGCGTCGCACCCACGGCAACGGAACCTGTGGAAACGTTAGAAAACTGAGTAAGGAAGGAAGGTAGGACTGAcgagaaaaaaagaaagatagACGACCAGCTTAAATTCCTATGGAATTGTCCTTTCGTCGCTCCTGGTTTCCTCTGTTTTGTACGCTCTCTTTTTAACCAGTGGCTGTCTGCGTCACAAGTTACTCACACCCTAGTCTCACACCCTAGTTCCCTAAAGTGTGGGACTCTATtgcaaagtagtgcactattaaaaagggaatagggtgtgattggAGGCTTTCCCTGTGACTCATGTGCACACTCCCAAGTCAACCCCCAGCCCCTACTACCCCCTAGGCACGGTAGATCTGAAAGGTCTGGATAAGTGTATTCAATATGGTGGAAATGCAAACTTGCCCATCACAGGGCAAGGTCAAGATACAATatatataccacacctgtccattCCTTTCATATCTACACAGGTGCACAGGACGTAAAGGgtaggggttgatttgggattggGCAATAGTAACAGATTCCGTCTGTGCTGCGTCAAAGTCTTAAGAGTCCaactgggcctcccgagtggcgcagcggtctacggcactgcagtgctagaggcgtcactacagatccaggTTAGATCCCTGGCTGCGACCGGgaaacccatgaggcggcgcacaattggcccagcgtcgtccgggttaggggagggtttggccggatggggatgtccttgtcccattgcgctctagcgactcctcgGTCGTCTGTTGCACAGTGTTTtttccaacacattggtgcggctggcttctgggttaagcgggcagtgtgtcaagaagcagtgcggcttggcagggtcatgtttcggaggacgctgTCCACCttagcctctcccgagtccgtatgcgagttgcagcgatgggacaaaacTTTAAcgaccaattggatatcacgaaattggaaggcaaaaggggtaaaatattattattattattattttttaaatagacTCCCAACTGCCAATCAGAGCCAGGTATTGGCCagaatttgagccaatcagatcaTAATATAAATGGTAtctgtggttggttggttggggcAGTCTGAGCATGTGCAGTGAGGCTGTAAATATGGAGTAATCCTGTGTCTTCCATCTGGGGCAAGTTGGCTGCATTCATTTTTGTAACGCTACATCTCTGCTCAAGGACTGTCAACATCAATAAATGCCTTTAAGCTGGA

Function

NR:

description
leucine-rich repeat-containing protein 59-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576569.2 True 2458 mRNA 0.49 8 36161203 36170899

Neighbor

gene id symbol gene type direction distance location
LOC110499426 LOC106589844 coding upstream 3421 36125503 ~ 36157782 (+)
LOC110499422 arl3 coding upstream 115126 36037722 ~ 36046077 (+)
LOC110499421 LOC106612362 coding upstream 132957 36021099 ~ 36028246 (+)
LOC118942065 NA coding upstream 185783 35971224 ~ 35975420 (+)
LOC118942471 NA coding upstream 276970 35884180 ~ 35884233 (+)
mrpl27 LOC106589850 coding downstream 2289 36173188 ~ 36179601 (+)
LOC110499432 LOC106589856 coding downstream 36479 36207378 ~ 36247512 (+)
LOC118942466 NA coding downstream 252847 36423746 ~ 36423861 (+)
LOC110499434 LOC106589860 coding downstream 266306 36437205 ~ 36540905 (+)
LOC110499435 LOC106589861 coding downstream 382980 36468873 ~ 36564830 (+)
G1689835 NA non-coding upstream 964 36159939 ~ 36160239 (+)
G1689818 NA non-coding upstream 45335 36115589 ~ 36115868 (+)
G1689817 NA non-coding upstream 45724 36115178 ~ 36115479 (+)
G1689809 NA non-coding upstream 59053 36100542 ~ 36102150 (+)
G1689737 NA non-coding upstream 99327 36055215 ~ 36061876 (+)
G1689843 NA non-coding downstream 14281 36185180 ~ 36185495 (+)
G1689845 NA non-coding downstream 17392 36188291 ~ 36188507 (+)
G1689849 NA non-coding downstream 25208 36196107 ~ 36196451 (+)
G1690078 NA non-coding downstream 76909 36247808 ~ 36248254 (+)
G1690088 NA non-coding downstream 79197 36250096 ~ 36250415 (+)
G1689732 LOC106612293 other upstream 35813 36120616 ~ 36125390 (+)
G1689671 NA other upstream 279329 35881578 ~ 35881874 (+)
LOC118942012 LOC106589797 other upstream 459064 35701200 ~ 35702156 (+)
G1689347 NA other upstream 478766 35681367 ~ 35682437 (+)
LOC110499396 LOC106589821 other upstream 776637 35381609 ~ 35384567 (+)
G1690092 NA other downstream 93761 36264660 ~ 36264981 (+)
G1690099 NA other downstream 104583 36275482 ~ 36275943 (+)
G1690116 NA other downstream 134040 36304939 ~ 36312698 (+)
G1690753 NA other downstream 707152 36878051 ~ 36880738 (+)
G1691142 NA other downstream 1371021 37541920 ~ 37543265 (+)

Expression


Co-expression Network