LOC110499429 (LOC106589855)


Basic Information

Item Value
gene id LOC110499429
gene name LOC106589855
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36181083 ~ 36196450 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576570.2
AGCAAAATAGGTGGCAGAATCCTGCAGTTAAACTGGATTTAACAACAGTGTCAGGCTCTGCCCTCGAATGAAGAGGAAGATAATCGATTTATTTTGATCTTCTTGGTTTGGACAGGAATAGCCTAATATCATGCCAGTGAAAGCCAACATTTTTATGTGGTCCGTTTACACAGCGGAACCTCGTTTACATGCTGATTGATTTTAGTTCAATATGTCTTTATCTGCATCTACAACTATCCCACCTGCGCTGACAGCGGATCAGCTAACGGTCATCGTGGCCTCCGTGTCCTGCCTGGTGTTCTTCGTAGTGATTCTCATGCTCCTGGTGGTCTTGTACAGGAAAGACCCTTTCTGCTGCAGGGTGTCGAACTACCAGGCCAACCAGCGCTGTACAGATGCTCCACCCCAGTACAACAGAAGACagtctctagtggtgtctcccTACAATGAACATACTGCTGCCATGGCCCATGGAAACATTGGATCCCAGCTTCCAGGGAGGCTGTTTATCATTGGTAAGCCCAGCAGCTATCACCTGGATGGGATCCTGCCCCGCCTTCCGTCCTACGAGAGCGTCCGTAAGAAGGACCGTCAGAGACATATCCACTCTATGATAGCCGACCGCTTTGGTATCAGCCCCACACAGTCTGAAACGGAGCCTCCTCCGACTTACGAGGAGACTCTTCGccagtccatgatcatctcctctGAAGACCCTCAGTCTGTTGAGGCACTTCCCTCggacctccctctctccacctgtaACTCCAGCCTTGAACACACAGTGACAGTAGATGCAGCCATGTCACCCTACCGCCCTATTCAGAGCTCGACCCGGGAACCCGTCTCTGTCTAGACCAGGAGTTATTTGAGGGTCGGGAAACACTCCTGGTTTTCAACTTCGCATTTTAACTAGAGACTCATGTTTCTACCCTTTGAAAGAGAAAAGAAGACAAATCAACAAAGAAAGAGATATTGTCATGATAATGCATGAGTCAGTTTCACTCAGAGTTTGTCTTCCTGAGACTAACGCTCTCAAATCTTGACTGTCGTCTGTTGGTGTAGTGAGTGGTTTTAACATGACTGTATGCTGTAAAGGGCTTGATATCCTTCCACTGGCAATGATATCCTTTATCAGCTAAATAATCAAATCAGCCTACATTTCAAACTCTAGACATGCTCGGGTGTGTGGAAAAGAAGATGTCCGCACCTCACAAGCAGACATATTATGCTTCATCACAACATCCAATGTCGTAGACAACCACAAAACAAGGACATTGTTTCGGGTTGAACGTGTTAATGAAAAATCTAAATCTCCTTGTTTCAAAAGAACACCGAGCTACGAATACCCAGCTACCTGACATGTGATGATGATGGCTGTGAGTGTAGCGCCAGACCAGAGAGCTGTTGTGGTTGAACACATCACTAATTATTAACACTACTGAAggcctatgtcccaaatggcaccctaatccccatgtaggtgcactacatagggaatagggtccccatTTGAGAGACAATCAAAGTGTGTTCACTCAGGGACAGTTGACCAGGGACCATTTGTCTTAACCCAGGTCAAACTAACTATGCACAGAGAAACTCACCGTGACCCCTGACGTtccgtattttttgaaactgcactgtcgtttaggggctcgtaagtaagcatttcactgcaaggtctactacacctgttgtattcagcatttcactgta
>TU1932979
TTCTACCCTTTGAAAGAGAAAAGAAGACAAATCAACAAAGAAAGAGATATTGTCATGATAATGCATGAGTCAGTTTCACTCAGAGTTTGTCTTCCTGAGACTAACGCTCTCAAATCTTGACTGTCGTCTGTTGGTGTAGTGAGTGGTTTTAACATGACTGTATGCTGTAAAGGGCTTGATATCCTTCCACTGGCAATGATATCCTTTATCAGCTAAATAATCAAATCAGCCTACATTTCAAACTCTAGACATGCTCGGGTGTGTGGAAAAGAAGATGTCCGCACCTCACAAGCAGACATATTATGCTTCATCACAACATCCAATGTCGTAGACAACCACAAAACAAGGACATTGTTTCGGGTTGAACGTGTTAATGAAAAATCTAAATCTCCTTGTTTCAAAAGAACACCGAGCTACGAATACCCAGCTACCTGACATGTGATGATGATGGCTGTGAGTGTAGCGCCAGACCAGAGAGCTGTTGTGGTTGAACACATCACTAATTATTAACACTACTGAAggcctatgtcccaaatggcaccctaatccccatgtaggtgcactacatagggaatagggtccccatTTGAGAGACAATCAAAGTGTGTTCACTCAGGGACAGTTGACCAGGGACCATTTGTCTTAACCCAGGTCAAACTAACTATGCACAGAGAAACTCACCGTGACCCCTGACGTtccgtattttttgaaactgcactgtcgtttaggggctcgtaagtaagcatttcactgcaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtactcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgcaaggtctactacacctgttgtattcagcatttcactgcaaggtctactacacctgttgtactcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtactcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtactcagcatttcactgtaaggtctactacacctgttgtactcagcatttcactgcaaggtctactacacctgttgtactcagcatttcactgcaaggtctactacacctgttgtatttagcatttcactgcaaggtctactacacctgttgtattcagcatttcactgcaaggtctactacacctgttgtattcagcatttcactgcaaggtctactacacctgttgtactcagcatttcactgcaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgcaaggtctactacacctgttgtactcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgcaaggtctactacacctgttgtactcagcatttcactgcaaggtctactacacctgttgtactcagcatttcactgcaaggtctactacacctgttgtactcagcatttcactgcaaggtctactacacctgttgtactcagcatttcactgtaaggtctactacacctgttgtactcagcatttcactgcaaggtctactacacctgttgtactcagcatttcactgtaaggtctactacatctgttgtactcagcatttcactgcaaggtctactacacctgttgtactcagcatttcactgcaaggtctactacacctgttgtactcagcatttcactgcaaggtctactacacctgttgtactcagcgcatgtgactaataacatttgatttgatttacctcCTGGGCTAAACTGGAATGGGTTTGTCAATGTGTTTAGACTGAGATACAGTATGTAACTATGCAAAAcatgcatattatgtgtgacccaaatcaaacaaaaaaacatgtgaaAGTAATAGTTAAATAGCTGAACCAAAAAGGTAAAATAGGTGAACTAAAGTAGATATAAATAACCTATCCGCTTTTTTAAAAAGTTTACTCTAACTACATTTCCATACAGTTTTCATGCGAGAAAAGTCACACCTTTGATAAATTTaatcacgacagctgtgatggaaacaggaagtttcagtACAGTTTTCTAAACGCTGACAGAtcatttgttcgttcgacatggcGGGATCTTTtcgtgtctgtaaaatgtgttatgcgagaaatggtggtggaatttatgcacaaatattgattgacaaatattgatataacaaccgtgtcgaagtaaacttggagtcacgcgatgacatggtgtgtgtggtcctcccactacaactggGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576570.2 False 1719 mRNA 0.47 5 36182780 36196450
TU1932979 True 2490 lncRNA 0.41 1 36181083 36183572

Neighbor

gene id symbol gene type direction distance location
LOC110499427 LOC106612293 coding downstream 57343 36120507 ~ 36125437 (-)
LOC118942067 NA coding downstream 65363 36115578 ~ 36117417 (-)
LOC110499425 LOC106589847 coding downstream 72940 36084938 ~ 36109840 (-)
LOC118942477 NA coding downstream 96400 36086253 ~ 36086380 (-)
LOC118942465 NA coding downstream 103810 36078855 ~ 36078970 (-)
LOC110499540 LOC106589857 coding upstream 63390 36258019 ~ 36336452 (-)
LOC110499433 LOC106589859 coding upstream 147804 36344254 ~ 36387672 (-)
LOC110499436 LOC106589862 coding upstream 387084 36583534 ~ 36592764 (-)
LOC110499438 LOC106589865 coding upstream 695396 36891846 ~ 36896982 (-)
LOC110499441 LOC106589863 coding upstream 723728 36920178 ~ 36935086 (-)
LOC110499423 NA non-coding downstream 145033 36031153 ~ 36037747 (-)
G1689916 NA non-coding downstream 300974 35881499 ~ 35881806 (-)
G1689922 NA non-coding downstream 303507 35879037 ~ 35879273 (-)
G1689899 NA non-coding downstream 337033 35837374 ~ 35845747 (-)
G1690257 NA non-coding upstream 49669 36246119 ~ 36247511 (-)
G1690259 NA non-coding upstream 51151 36247601 ~ 36248692 (-)
G1690286 NA non-coding upstream 55489 36251939 ~ 36253293 (-)
G1690287 NA non-coding upstream 57178 36253628 ~ 36253828 (-)
G1690288 NA non-coding upstream 57896 36254346 ~ 36254734 (-)
LOC110499416 dnah17 other downstream 315996 35864651 ~ 35951415 (-)
G1689556 NA other downstream 539003 35643368 ~ 35643777 (-)
G1689461 NA other downstream 702723 35478114 ~ 35480057 (-)
G1689131 NA other downstream 922572 35259886 ~ 35260208 (-)
G1690367 NA other upstream 223266 36418789 ~ 36420600 (-)
G1690649 NA other upstream 506096 36702546 ~ 36703441 (-)
G1690696 NA other upstream 613249 36809699 ~ 36810143 (-)
G1691432 NA other upstream 1042377 37238827 ~ 37239310 (-)
G1690063 NA non-coding upstream 3029 36186601 ~ 36187944 (-)
G1690065 NA non-coding upstream 10081 36193653 ~ 36193996 (-)

Expression


Co-expression Network