LOC110499432 (LOC106589856)


Basic Information

Item Value
gene id LOC110499432
gene name LOC106589856
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36207378 ~ 36247512 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576572.2
AAAAAACAAAGCCCAGTTGATTTGAGCACACAAGGAAGAGTACTTTTGTGGGTGTGTCTGACTACGTGCACTCCACAAATAGTTACTTGATCGCAACATAGTTTCGAGGAGGACCTTACCGAGACGCAAGTGAAATAATACGTTCTGTTTTGATAGAAAGTAAACTGTGAGAGCGACCGGTCGTTCGAAGTAGTTAGTCCGTCAATTTAATTTCTGAGATTGTTTGTTGTCCACGTTTACCTTCTTTGTTGTGACGTCTTTGGACGTTATCTGTGAGAATATTTGATCAGCGGCAACATTATGTCAAACCTCCGGCCTAGATGTTGTATTTTAGGAAAGGGTTCGAATGGCTACGGCTTCCATCTGCACGGTGAGAAAGGGAAGACCGGACAGTTTATCCGACTGGTAGAACCAGACTCTCCTGCCGCCACCGCCGGTCTCTTCGCTGGGGACCGACTGACGTTCGTTAACGGGGACAGCGTGGAGGGTGAGAGCCACCAGCAGGTCGTTGCCCGGATACGAGCCACCGTGGGCAGCCTCGAGCTGATCGTGGTAGACGCTGAGACCGCGGAGGTACTGAAGAAGCACAACTTGGAGTGCCGTAAAGAGTATGTCACGGAGGGCATCCCGTTACCGGGCAGCAAATCGGGCCATGGGGATGCAGCGGAGAGCGAGGCGACTGCTACATCGGCAGAGAACGGAAACTTCTCCCTACAGAGGCTAAGTGTGAGCGCCAAGGACTCGAAGGCAGAGCTGCGTCCTCGTCTGTGCTCGATGAAGAAGGGTGCGACGGGCTATGGCTTCAACTTGCACAGTGAGAAGTCTAAACCGGGCCAGTACATTAGAGCTGTGGACGAGGAATCTCCTGCTGACAAGGCTGGTCTCAAACCGCAGGACAAGATAGTACAGGTTAACAGTAAGTCAGTAGCAGGGATGCAGCACAGTGAGGTGGTAGCAGCCATCAAGGCCGGGGGAGATGAGACCAGTCTACTGGTGGTGGATCGTGAGGCAGAAGCTTTCTTCAACAGCTGCAACGTCATTCCTACTGAGGCCCAcctcacagGACCTCTTCCTGAACCTGTGTCCAATGGAGGAGCAGAAGAAGAGGAGCTGGATGGTAAGGTAGCAGTAAAGCCTAAGGTGTCTGTCAGTGCATCGACATCCAGCACCACCTCCACTGCCTCTCTACCAACATCCGCTGCCAGCACCCCTCcaccagaggtccgGGTGCCTCCGGTTAAGGAGCCGAATGCGAGCCTCAGCATGTCTCTAGCCCAGGCCAAGGAGAGAGCTCACCAGAAACGCTCATCCAAGAAGGCCCCTGCCATGGACTGGAGCAAGAGGAACGAACTCTTCAGTAACCTATAAATCacctttccttcctcctttctctcgccctcgctccttcttttgctctctctctcaagcaGACACACAATGTACGACATGAACAGTGTTAATATTTTGTGATTTTCATGTGCTAATTGAGGGGTTTTCCACTTTATTttttttcaataaaaaaataattgaaaTGCCACTCCTGCATAAGAAACATTGTATAGTTTCCATCTAGTAGGATGATGAAGAAATCAAAGATGATGGAATATATGGAAATAAGAAATGAATGTGTATCATGAAGGTCTGTTGAATCTTATTGTCAGTCTATCTGCAATCTGATTGGTTGCTATACTTCCTTGTAGAATCACGAGCTAGCTAATAGCAAGCTGGGAGTGATTGAGTTTTTCGGGATGAGTTAAGATGAATCAAAACCTTCTTTCCAGAGACTCATGTTTAGTACTTCTGCCTGATCACTGGGCTCAATCCGTATGGTGGAAGATCCAAGTTATTTCTTCATCTAAAGTTAGTGAATTTTCCTGCGtttgcggagactgcattcacagtaaacgtTGACGCAAtcagaaatgacctttacatttgaACCTGGATCTTCTGCGATATGGATGAAACTCAGCCCTTAATGAATGACTAACCATCTGAATTCTTTAGCAATACAAAATAATTAATGAGGTCGACACGTCTGGTTAGCAAATATCACTGAATTTGTTCAGGAAATGTGTCATTCTAATGCTGACCACTGGTGTACTACCCTATCTTTTTGAAGATGTTGACATGTCAATTCTTAGACTGTAGAACCCATTCAGAATACATGAGATTCTCTGTTCTATATGTGACAATCATTGTTGGGTCACATTTCGGTTAAAGGGACTGAGGTATGTGGTTCTAGATGTTAACCCAAAGTAAACTGTTGTTTAACTGTAAAGTTAACCTGTCCAAACTGGTGTTCAATCACCACTATTGTAAAATCCTACGGTATTTTTATCGTTGTGATTCAACTTTTTGTCCTGCCTATGTCTCATCGTTTTAAAGAATGACGATTGTGTCTTCTAGATTTGTACATAACTCAAAATACAATTTCCGTCTTAAAGAAAGAAATCCTCAATTTGTTTGAAGACTGTTCCAGAATCTTTCTGGGTTGACGGGAGTGTTAGCCTACTGTATATGTGgcagctctggtccagggcgctACTGGCTGTGTACGGTACAAGGGCTGAGTTGTCAAATGTCTTGAGGATGACTGGTATAAATGTGGTATCAAACA

Function

NR:

description
Na(+)/H(+) exchange regulatory cofactor NHE-RF1-like

GO: NA

KEGG:

id description
K13365 SLC9A3R1, NHERF1; sodium/hydrogen exchange regulatory cofactor NHE-RF1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576572.2 True 2620 mRNA 0.46 6 36207378 36247512

Neighbor

gene id symbol gene type direction distance location
mrpl27 LOC106589850 coding upstream 27777 36173188 ~ 36179601 (+)
LOC110499428 LOC106589848 coding upstream 36479 36161203 ~ 36170899 (+)
LOC110499426 LOC106589844 coding upstream 49596 36125503 ~ 36157782 (+)
LOC110499422 arl3 coding upstream 161301 36037722 ~ 36046077 (+)
LOC110499421 LOC106612362 coding upstream 179132 36021099 ~ 36028246 (+)
LOC118942466 NA coding downstream 176234 36423746 ~ 36423861 (+)
LOC110499434 LOC106589860 coding downstream 189693 36437205 ~ 36540905 (+)
LOC110499435 LOC106589861 coding downstream 306367 36468873 ~ 36564830 (+)
LOC118942015 LOC106589862 coding downstream 331214 36578726 ~ 36592198 (+)
LOC110499541 ankfn1 coding downstream 448263 36695775 ~ 36809459 (+)
G1689849 NA non-coding upstream 10927 36196107 ~ 36196451 (+)
G1689845 NA non-coding upstream 18871 36188291 ~ 36188507 (+)
G1689843 NA non-coding upstream 21883 36185180 ~ 36185495 (+)
G1689835 NA non-coding upstream 47139 36159939 ~ 36160239 (+)
G1689818 NA non-coding upstream 91510 36115589 ~ 36115868 (+)
G1690078 NA non-coding downstream 296 36247808 ~ 36248254 (+)
G1690088 NA non-coding downstream 2584 36250096 ~ 36250415 (+)
G1690089 NA non-coding downstream 7304 36254816 ~ 36255336 (+)
G1690091 LOC106589857 non-coding downstream 14262 36261774 ~ 36263131 (+)
G1690092 NA non-coding downstream 17148 36264660 ~ 36264981 (+)
G1689732 LOC106612293 other upstream 81988 36120616 ~ 36125390 (+)
G1689671 NA other upstream 325504 35881578 ~ 35881874 (+)
LOC118942012 LOC106589797 other upstream 505239 35701200 ~ 35702156 (+)
G1689347 NA other upstream 524941 35681367 ~ 35682437 (+)
LOC110499396 LOC106589821 other upstream 822812 35381609 ~ 35384567 (+)
G1690099 NA other downstream 27970 36275482 ~ 36275943 (+)
G1690116 NA other downstream 57427 36304939 ~ 36312698 (+)
G1690753 NA other downstream 630539 36878051 ~ 36880738 (+)
G1691142 NA other downstream 1294408 37541920 ~ 37543265 (+)

Expression


Co-expression Network