LOC110499433 (LOC106589859)


Basic Information

Item Value
gene id LOC110499433
gene name LOC106589859
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36344254 ~ 36387672 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956291.1
ATTTAGGGTTTTTGACTGACGTTTGCAGCGACTACTACCGATTCAAGGCTGCCCTAGCAACCCGCTGGATGAGCCAACCATAGCGGCGCAAGGCTTGACCCTCTGCGGCTACTGGAGACATGCCTGCTTGGAGAGAGGAAACGACAGACATCCGAGAGAGCTGCGGAACAGCGTGGCTGGCGACCCAAAAGCAGGACTATAAAAAAAATGACACTTCTGGTACTTTAACGGCACGGTAGCGTGAATGAAGGATTTATGGAAAGAAGATTTGAGCACAGGAACAGGTTCGGCGTGAGCGGCAAGCTTTGATGTTACAGTGGATTACACTGTAGATCTCAAATCTCCAGTTGGAGGAAAAACGGAAGAAGTGATCGAACAGTCGTGTACACGGTGTTCCATGATGGAACATAATCATTCTTCACCGTGAGGATGAACCACAGAACCAGCCCCGCCAAGGCTTACGATTTTCTGCTCAAGTTTCTCCTGGTCGGGGACAGCGATGTGGGAAAGGGGGAGATACTTGCGAGCCTCGAGGACGGAGCCAGCGAGTCTCCATATGGCTACAACATGGGAATCGACTACAAGACGACTACGATACTCCTAGATGGAAGAAGAGTCAAGCTGCAGCTCTGGGACACATCTGGCCAGGGGCGCTTCTGCACCATCTTCCGCTCCTACTCCAGAGgagcacagggtgtgATCTTGGTCTATGACATCACCAACCGATGGTCCTTTGATGGTATTGACAGATGGATAAAGGAGATAGATGAGCATGCACCAGGAGTTCCCAAGATCCTGGTGGGTAACCGGTTACACCTGGCCTACAAGCGTCAGGTGACCACGGAGCAGGCCCAGCTGTACGCTGAGAGGTTAGGGGTAACCTTCTTCGAGGTCAGCCCGCTGTGCAACTTCAACATCACGGAGTCCTTCACAGAGCTGGCCAGGATTGTCCTGATGAGGCACGGTATGGAGAGACTCTGGAGACCCAACAAAGTGTTGAGTCTCCAGGACCTGTGCTGTCGTTCCATCGTGTCTTGCACCCCTGTCCACCTGGTTGACAAGCTTCCTCTCCCCCTGGCCCTCAAGTCCCACCTCAAGTCTTTCTCCATGGCCAACGGCCTCAATGCCCGCATGATGCACGGAAGTTCCTACTctgtcaccaccaccaacaccacccacATCGCCACCAAGAGGACCGGAGGCCAGCTgctgaaaaataaaaaatgtatccgCCCTCAGCAGCTCAGCCCGGCGGCCGCACAGAGCTGCACCGGCAACAGCTGCAAGATCTCCTAGCAACCGGCTCGAAACAGGAATAGGAAGTCCTTGGGACAGTATGTTGTTATCACAGGAACAGGAAATTGGTGTTGCTCACTACTGCAGCTCATCTAGGCTCACCAAGAGCCAGCCACATGAGCTTCAAGGGTGTTTTCAATGAGGGGTGACCCCTCACAGCCCCCCATAACCCCACAGACCAGGAAGTTGTCACAGGGACTGGATGTTCTAGGCCTCCAGACCCACAAGAGTCCCACCTGAGCTCCATGGTGGAACGAAGATGTGGAATGAACCTGCCAAGTTCAGAGGCTGTGGATTGACACTACTGGTCACTAGCATTGGACCCAAAAGGAAGTTTTGACAACCGATCATGTCTGAGCCATATGACTGTATAGTGCGTAATATGATTCCATGAATACAGTATGTCAACATATGAACTGTTCAACTGTATAGTACTATGTGTACACTATTTGTGGATGATCTGTGGTTATTTTTGCTCTGTTGCCTCACCCAATGACACAAAGCATTCAAATGAGTTTCACACCTGTGGTCTAATTTCACAATGAAAGAAAAGTGGACTGGTATTATAAGTGGTATACTATATCGTTGCCTTTTAAACAAAATGCTGGACATAGCCTTTTTAAGACCTGGCTACTGGTTTTACACACCGTTACTTTttacagtaaaatactatttTTGCCGACGTCGTCTGGAATTTCAAGTCGGCAATTCTTTGGAGAAACCATTTGTATAATGAATTTGTATGATATGTACAGTTATGACAATGTTGTTTGATACTGTTTGTTTGATGTTGGGTTTGTAGGTGTTTCACAGTGACACAGATGATGctattaagcaataaggccctagggggtgtggtatatggccaatataccacggctaagggctgtttttaGGCACGATGCAATCCGGCCGTATATCAccaacccccaaggtgccttactgcaattataaactgtttaccaatgtaattagagcagtaaaagtACATGTTTTATCATACTTGTGGTATACGTTCTataataaactgggtggttcgagccctgaatgctgattggctgaaagctgtggtatatcagaccgtataccccGGGTATGAcagaacatgtatttttactgctctaatcacgttggtaaccagtttataatagcaataagtcacCTCGGGGGGTTTGTgaaatatggccaatataccactgataagggctgtgtccagacaCTCCGCGTTGTCTTGCGTAAGaactgcccttagccgtggtatattggtcatataacacacctcctcgggccttattgcttaaatataccgcaactttcagccaatcagcattcagggctggaaccagCCAGTTTATAATTTCAGATAGATAGTGACAACACCAAAGACACAGCAGACGTAGTGAGGACGTCACTGAATGAACAAGCTGTTTTGTACAGTAAATATTACCACTACAATAAATTTCACAAACAGGAAGTGT
>XM_036956292.1
GGTATTTAGGGTTTTTGACTGACGTTTGCAGCGACTACTACCGATTCAAGGCTGCCCTAGCAACCCGCTGGATGAGCCAACCATAGCGGCGCAAGGCTTGACCCTCTGCGGCTACTGGAGACATGCCTGCTTGGAGAGAGGAAACGACAGACATCCGAGAGAGCTGCGGAACAGCGTGGCTGGCGACCCAAAAGCAGGACTATAAAAAAAATGACACTTCTGGTACTTTAACGGCACGGTAGCGTGAATGAAGGATTTATGGAAAGAAGATTTGAGCACAGGAACAGGTTCGGCGTGAGCGGCAAGCTTTGATGTTACAGTGGATTACACTGTAGATGTAGGctcatttttatacatttttaattaCATTGTGTTGTCACTTTCGGTGACCAAATTGACACTTGTAGCTTTCATTCAAGCTTCTATTTTGGAGACTTTGTGAGTTACCAGATATTATTTTTGAATCGTAATATAAACAGTCGAAGAACACCACATTAAATTTGACTCTCTTTTTTGCTCCTTTGATTCGTGCGTCACACAGCTCAAATCTCCAGTTGGAGGAAAAACGGAAGAAGTGATCGAACAGTCGTGTACACGGTGTTCCATGATGGAACATAATCATTCTTCACCGTGAGGATGAACCACAGAACCAGCCCCGCCAAGGCTTACGATTTTCTGCTCAAGTTTCTCCTGGTCGGGGACAGCGATGTGGGAAAGGGGGAGATACTTGCGAGCCTCGAGGACGGAGCCAGCGAGTCTCCATATGGCTACAACATGGGAATCGACTACAAGACGACTACGATACTCCTAGATGGAAGAAGAGTCAAGCTGCAGCTCTGGGACACATCTGGCCAGGGGCGCTTCTGCACCATCTTCCGCTCCTACTCCAGAGgagcacagggtgtgATCTTGGTCTATGACATCACCAACCGATGGTCCTTTGATGGTATTGACAGATGGATAAAGGAGATAGATGAGCATGCACCAGGAGTTCCCAAGATCCTGGTGGGTAACCGGTTACACCTGGCCTACAAGCGTCAGGTGACCACGGAGCAGGCCCAGCTGTACGCTGAGAGGTTAGGGGTAACCTTCTTCGAGGTCAGCCCGCTGTGCAACTTCAACATCACGGAGTCCTTCACAGAGCTGGCCAGGATTGTCCTGATGAGGCACGGTATGGAGAGACTCTGGAGACCCAACAAAGTGTTGAGTCTCCAGGACCTGTGCTGTCGTTCCATCGTGTCTTGCACCCCTGTCCACCTGGTTGACAAGCTTCCTCTCCCCCTGGCCCTCAAGTCCCACCTCAAGTCTTTCTCCATGGCCAACGGCCTCAATGCCCGCATGATGCACGGAAGTTCCTACTctgtcaccaccaccaacaccacccacATCGCCACCAAGAGGACCGGAGGCCAGCTgctgaaaaataaaaaatgtatccgCCCTCAGCAGCTCAGCCCGGCGGCCGCACAGAGCTGCACCGGCAACAGCTGCAAGATCTCCTAGCAACCGGCTCGAAACAGGAATAGGAAGTCCTTGGGACAGTATGTTGTTATCACAGGAACAGGAAATTGGTGTTGCTCACTACTGCAGCTCATCTAGGCTCACCAAGAGCCAGCCACATGAGCTTCAAGGGTGTTTTCAATGAGGGGTGACCCCTCACAGCCCCCCATAACCCCACAGACCAGGAAGTTGTCACAGGGACTGGATGTTCTAGGCCTCCAGACCCACAAGAGTCCCACCTGAGCTCCATGGTGGAACGAAGATGTGGAATGAACCTGCCAAGTTCAGAGGCTGTGGATTGACACTACTGGTCACTAGCATTGGACCCAAAAGGAAGTTTTGACAACCGATCATGTCTGAGCCATATGACTGTATAGTGCGTAATATGATTCCATGAATACAGTATGTCAACATATGAACTGTTCAACTGTATAGTACTATGTGTACACTATTTGTGGATGATCTGTGGTTATTTTTGCTCTGTTGCCTCACCCAATGACACAAAGCATTCAAATGAGTTTCACACCTGTGGTCTAATTTCACAATGAAAGAAAAGTGGACTGGTATTATAAGTGGTATACTATATCGTTGCCTTTTAAACAAAATGCTGGACATAGCCTTTTTAAGACCTGGCTACTGGTTTTACACACCGTTACTTTttacagtaaaatactatttTTGCCGACGTCGTCTGGAATTTCAAGTCGGCAATTCTTTGGAGAAACCATTTGTATAATGAATTTGTATGATATGTACAGTTATGACAATGTTGTTTGATACTGTTTGTTTGATGTTGGGTTTGTAGGTGTTTCACAGTGACACAGATGATGctattaagcaataaggccctagggggtgtggtatatggccaatataccacggctaagggctgtttttaGGCACGATGCAATCCGGCCGTATATCAccaacccccaaggtgccttactgcaattataaactgtttaccaatgtaattagagcagtaaaagtACATGTTTTATCATACTTGTGGTATACGTTCTataataaactgggtggttcgagccctgaatgctgattggctgaaagctgtggtatatcagaccgtataccccGGGTATGAcagaacatgtatttttactgctctaatcacgttggtaaccagtttataatagcaataagtcacCTCGGGGGGTTTGTgaaatatggccaatataccactgataagggctgtgtccagacaCTCCGCGTTGTCTTGCGTAAGaactgcccttagccgtggtatattggtcatataacacacctcctcgggccttattgcttaaatataccgcaactttcagccaatcagcattcagggctggaaccagCCAGTTTATAATTTCAGATAGATAGTGACAACACCAAAGACACAGCAGACGTAGTGAGGACGTCACTGAATGAACAAGCTGTTTTGTACAGTAAATATTACCACTACAATAAATTTCACAAACAGGAAGTGT
>XM_036956293.1
GGTATTTAGGGTTTTTGACTGACGTTTGCAGCGACTACTACCGATTCAAGGCTGCCCTAGCAACCCGCTGGATGAGCCAACCATAGCGGCGCAAGGCTTGACCCTCTGCGGCTACTGGAGACATGCCTGCTTGGAGAGAGGAAACGACAGACATCCGAGAGAGCTGCGGAACAGCGTGGCTGGCGACCCAAAAGCAGGACTATAAAAAAAATGACACTTCTGGTACTTTAACGGCACGGTAGCGTGAATGAAGGATTTATGGAAAGAAGATTTGAGCACAGGAACAGCTCAAATCTCCAGTTGGAGGAAAAACGGAAGAAGTGATCGAACAGTCGTGTACACGGTGTTCCATGATGGAACATAATCATTCTTCACCGTGAGGATGAACCACAGAACCAGCCCCGCCAAGGCTTACGATTTTCTGCTCAAGTTTCTCCTGGTCGGGGACAGCGATGTGGGAAAGGGGGAGATACTTGCGAGCCTCGAGGACGGAGCCAGCGAGTCTCCATATGGCTACAACATGGGAATCGACTACAAGACGACTACGATACTCCTAGATGGAAGAAGAGTCAAGCTGCAGCTCTGGGACACATCTGGCCAGGGGCGCTTCTGCACCATCTTCCGCTCCTACTCCAGAGgagcacagggtgtgATCTTGGTCTATGACATCACCAACCGATGGTCCTTTGATGGTATTGACAGATGGATAAAGGAGATAGATGAGCATGCACCAGGAGTTCCCAAGATCCTGGTGGGTAACCGGTTACACCTGGCCTACAAGCGTCAGGTGACCACGGAGCAGGCCCAGCTGTACGCTGAGAGGTTAGGGGTAACCTTCTTCGAGGTCAGCCCGCTGTGCAACTTCAACATCACGGAGTCCTTCACAGAGCTGGCCAGGATTGTCCTGATGAGGCACGGTATGGAGAGACTCTGGAGACCCAACAAAGTGTTGAGTCTCCAGGACCTGTGCTGTCGTTCCATCGTGTCTTGCACCCCTGTCCACCTGGTTGACAAGCTTCCTCTCCCCCTGGCCCTCAAGTCCCACCTCAAGTCTTTCTCCATGGCCAACGGCCTCAATGCCCGCATGATGCACGGAAGTTCCTACTctgtcaccaccaccaacaccacccacATCGCCACCAAGAGGACCGGAGGCCAGCTgctgaaaaataaaaaatgtatccgCCCTCAGCAGCTCAGCCCGGCGGCCGCACAGAGCTGCACCGGCAACAGCTGCAAGATCTCCTAGCAACCGGCTCGAAACAGGAATAGGAAGTCCTTGGGACAGTATGTTGTTATCACAGGAACAGGAAATTGGTGTTGCTCACTACTGCAGCTCATCTAGGCTCACCAAGAGCCAGCCACATGAGCTTCAAGGGTGTTTTCAATGAGGGGTGACCCCTCACAGCCCCCCATAACCCCACAGACCAGGAAGTTGTCACAGGGACTGGATGTTCTAGGCCTCCAGACCCACAAGAGTCCCACCTGAGCTCCATGGTGGAACGAAGATGTGGAATGAACCTGCCAAGTTCAGAGGCTGTGGATTGACACTACTGGTCACTAGCATTGGACCCAAAAGGAAGTTTTGACAACCGATCATGTCTGAGCCATATGACTGTATAGTGCGTAATATGATTCCATGAATACAGTATGTCAACATATGAACTGTTCAACTGTATAGTACTATGTGTACACTATTTGTGGATGATCTGTGGTTATTTTTGCTCTGTTGCCTCACCCAATGACACAAAGCATTCAAATGAGTTTCACACCTGTGGTCTAATTTCACAATGAAAGAAAAGTGGACTGGTATTATAAGTGGTATACTATATCGTTGCCTTTTAAACAAAATGCTGGACATAGCCTTTTTAAGACCTGGCTACTGGTTTTACACACCGTTACTTTttacagtaaaatactatttTTGCCGACGTCGTCTGGAATTTCAAGTCGGCAATTCTTTGGAGAAACCATTTGTATAATGAATTTGTATGATATGTACAGTTATGACAATGTTGTTTGATACTGTTTGTTTGATGTTGGGTTTGTAGGTGTTTCACAGTGACACAGATGATGctattaagcaataaggccctagggggtgtggtatatggccaatataccacggctaagggctgtttttaGGCACGATGCAATCCGGCCGTATATCAccaacccccaaggtgccttactgcaattataaactgtttaccaatgtaattagagcagtaaaagtACATGTTTTATCATACTTGTGGTATACGTTCTataataaactgggtggttcgagccctgaatgctgattggctgaaagctgtggtatatcagaccgtataccccGGGTATGAcagaacatgtatttttactgctctaatcacgttggtaaccagtttataatagcaataagtcacCTCGGGGGGTTTGTgaaatatggccaatataccactgataagggctgtgtccagacaCTCCGCGTTGTCTTGCGTAAGaactgcccttagccgtggtatattggtcatataacacacctcctcgggccttattgcttaaatataccgcaactttcagccaatcagcattcagggctggaaccagCCAGTTTATAATTTCAGATAGATAGTGACAACACCAAAGACACAGCAGACGTAGTGAGGACGTCACTGAATGAACAAGCTGTTTTGTACAGTAAATATTACCACTACAATAAATTTCACAAACAGGAAGTGT

Function

NR:

description
ras-related protein Rab-40B-like

GO: NA

KEGG:

id description
K07928 RAB40; Ras-related protein Rab-40

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956291.1 False 2774 mRNA 0.48 7 36344254 36387669
XM_036956292.1 False 2981 mRNA 0.47 6 36344254 36387672
XM_036956293.1 True 2727 mRNA 0.48 7 36344254 36387672

Neighbor

gene id symbol gene type direction distance location
LOC110499540 LOC106589857 coding downstream 7802 36258019 ~ 36336452 (-)
LOC110499429 LOC106589855 coding downstream 147804 36181083 ~ 36196450 (-)
LOC110499427 LOC106612293 coding downstream 218817 36120507 ~ 36125437 (-)
LOC118942067 NA coding downstream 226837 36115578 ~ 36117417 (-)
LOC110499425 LOC106589847 coding downstream 234414 36084938 ~ 36109840 (-)
LOC110499436 LOC106589862 coding upstream 195862 36583534 ~ 36592764 (-)
LOC110499438 LOC106589865 coding upstream 504174 36891846 ~ 36896982 (-)
LOC110499441 LOC106589863 coding upstream 532506 36920178 ~ 36935086 (-)
LOC118942469 NA coding upstream 558594 36946266 ~ 36946381 (-)
LOC110499443 rbfox3 coding upstream 668281 37055953 ~ 37197149 (-)
G1690307 NA non-coding downstream 27104 36303795 ~ 36317150 (-)
G1690297 NA non-coding downstream 60170 36283787 ~ 36284084 (-)
G1690294 NA non-coding downstream 70929 36272993 ~ 36273325 (-)
G1690289 NA non-coding downstream 79197 36264659 ~ 36265057 (-)
G1690359 NA non-coding upstream 16105 36403777 ~ 36404059 (-)
G1690367 NA non-coding upstream 31117 36418789 ~ 36420600 (-)
G1690422 NA non-coding upstream 150597 36538269 ~ 36550236 (-)
G1690423 NA non-coding upstream 171372 36559044 ~ 36564783 (-)
G1690457 NA non-coding upstream 178669 36566341 ~ 36569184 (-)
LOC110499416 dnah17 other downstream 477470 35864651 ~ 35951415 (-)
G1689556 NA other downstream 700477 35643368 ~ 35643777 (-)
G1689461 NA other downstream 864197 35478114 ~ 35480057 (-)
G1689131 NA other downstream 1084046 35259886 ~ 35260208 (-)
G1690649 NA other upstream 314874 36702546 ~ 36703441 (-)
G1690696 NA other upstream 422027 36809699 ~ 36810143 (-)
G1691432 NA other upstream 851155 37238827 ~ 37239310 (-)

Expression


Co-expression Network