LOC110499434 (LOC106589860)


Basic Information

Item Value
gene id LOC110499434
gene name LOC106589860
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36437205 ~ 36540905 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956294.1
CGTGATGGACGTGTATCAGGAGGGATTAGTGGTAAAGATAGGCAGGCGTGTTCTCTCTCTGACGAGGCGgatttcaatctctctctcccaactgTTTAAACTGCTAGTGTCTCATCTCTCTCCAAACAACTGACTGCTCTCATCTCCCATGGCTCCgtaatatttgtgtgtgtgtgtctgtgtgggggggtgtttttatctccctgtctgtgtgtgtttgagaaagtgattcagtctctctttctgtgcGATGGCACTACTGCCTAAGGAGGCAGAACGATTCGATGGGCTATCTCTGCTATACTGGACCGTCATGGGGCCTCACGGCATCAACCGGGCCATTGAGAGACTGGAGTTCTGCGACTGCAAGAAAGGACTGGGGGTGAAGATCATCGGTGGCTACAGAGAGCAGACACGTGAGGAGTTTGGGATCTTCATCAAGCGGGTGTTACCGGGAGGGCTGGCTGCTCAGGATGGGAGGCTTAGAACGGGCGACCTCATTTTGGAAGTCAATAATATGAGTTTAGGAGGAGTAACCAACGAGAGGGCGGTGGATATCCTCCGGTCAGCGTCAGCCTCCAATCACATGTCTCTGATGGTTGCCAGGGACGATGAAAGCAGgCGGGAGTTCATTGAGTTGATGAATAAGTATGGCTCCCACAGCAGTTTTAAAGGAAGCTCAGGGAGGGTCTCCCCTACACAGCTCTCTACAGgaGGCAAGACAGACacagcctcctcctcttcctcctccagatCTACCAGTCCCACCAGCCAGCTCTTCAGTCCTAAAGAGGGGGTCACAGGACCTCCCTATACCACTGGGCCCCCCTATACGTCAAACCCCAACACAGCCCCTACACAGCCCGTCTTCAAtgaCAGCATCATTCAGTTGATATGCATCTCAAAAGGAACAGGCCTGGGCCTCATCATCAAGGGCGGAGCTAACCGAGCCGAGGGACCAATGGTGTTGATTCAGGAAATAGTGCCCGGAGGAGACTGCCAGAGGGACGGTAGACTACAGCCAGGAGACCAGCTGGTATCGATTAATAAGGAGTCGTTAATCGGAGTGACTTATGAGGAGGCTAGAAGTATCCTGACACGCACCAAACTCAGACCAGACCCTACGGTGGAGATAGCGTTTATGAGACACAGGACTTCCACCAGTTCTGCTTCCTCCAGCAGTGGCCCCCAGGGTCCTTTCACCCCACAGGGCGCAGCCAGTGGAGCCTCCTCAGTGCCCCCCACCAGGAGAGGGACCCTGGCTGTACTGGGGGCCCTGCCTCCCCCTCGGTCACTGCTCCAGCACAGGAGAACCACGCTCCCTGCAGCCCTCCCTGGAGCTCCCCTGGTGGTGCCCAAGATCACCTCCACCCTCAACCCCGCCAGCGAGACCCTGCCTTCTGTCAACCTCAGCCAGGTGCGAATGAGGACAGAACAGACGtgtgtctcctcccctcctcagagTCCCAGCACCGCAGACGCCAAGCCTGAATCCTCCACTGTATGGCAGCCAGTCAGCAGTCTCGTACCACAAAGGAAGTGCTCCCTCAGCTCCATCTGTCGCCTCAAACTGGAGAGGCTGGAGCAGGCTCTGGATGCATTGGGACTGAATCCTacagaggcacagagacagaCGTTGAGGGCCAGACTACAAACAGACCCTGCTGGGACAGTGGCCTACGCAGACTTTGAGACGCTGACGCGGGAGCTGTTCAAGCTACAGTTTGAGGAGTCAGAGGTGGGAGGTCAGAGGTTAAAGTTTGTGTCAGAAGACCTCTCCAGCCTCCTAGAGTCACCCACCAATACACGGTCTTCACTGTCTGACTCTGATGAcctagaggagatggagagactgagGAAAGACCACATCGAGGCTCTGAGAGAAATCAAGAAACTACAGGAGCAGTTGGCAGAGTCCGAGAGACTTCAACTGCAGATGCAGGGAGAGCTGAACAATGTcaaacagGAGGTCAAGTCTGGAGTTGAGGAGAGCCGTGCACTGCGGAGCAGGATCCACCTGTCTGAGGCAGCCCAGAAGCAGGCCAGGGGGATGGAGATGGATTATGAGGAGGTGATCCATCTCCTGGAGGCTGAGATAGCTGAGCTCCAGACCCAGAGGACAGAGCAGCCCGGCCagtccagcctggtgcagGATGAGACAGAGGAACTGAAGAAGAGAGTGGCCGTTCTGGAGTGTCAACTAAGGAAGAACGAGGAGGCCAAAAAGGGTTTTGAGGTGTCCATGGGTAAACTGCTCAACTTCGTGGAGAATGTCCAAGACTTCCTCATTGAAAATCAAGGACCTGTGAAGAGCTTCAGctCCGGTGACGTGAAGGCTGGAGCCTCCTCTCAGCCCTTGGGAGCCCGGGCGGGGAAGAAGTCCCAGTGGACAGCCGCCACACTAACCGCGGAGGCTAAAGAACTCACACGGACTGTTAGCGCCATTCTGGAGGTGGAGTaTCTTCCATATGGATGGGAAGAGGCCTACACTGCAGAAGGAGTCAAATACTTCATCAATCATGTGACGCAGACGACATCGTGGACCCATCCGGTGACCTGCAGCCTGGCTCTGGGGTTGGGGCTgtccgagagagagggggaggtatcAGCCGATGGACAGGAAGACAACACAGCCACCCCCAACCCCGACCACACCAAGACTTAGACCTGGGACAGTTCCAAAGGATATAACATTGCAGAATCTTCAGATAAACGTGTATTGAATAGACTAGATATTGTATGTCTTGGAGTTGGATAATAGAGAGGCCTCGCAGGCAGCTCTGTATAtaacatttctatctgaacgttctgtCGCGTTGCTCTTCCCCAAGAGAAGAAAAAACACCAGGCATTGGTGAAACAACACCAGTCTTCCTCTACAAATAGAGATTCAGTAGAACCCTAGAGGTGGATACAGAGACAACTACCTGAAACCCTTTAGGAGCCCCAACAAAATACTGTCTTTAAAATCATATAAGTAGCTACACATAATGTTTCATTAAATGGCAGTGTACGTTAGCTGTTCTGGTGAATATGCAGTTTAaactttatatatatttttttacattaaaacCTATCCGTAATTGGGCTGAGCAGTGTATAGACAGTTAATTAATTGTGTTAAAATGAATTGCACAAGGCTAGCTTCCCGGTTCGATGGAGTTGATTCATGACTCTTATTATATCGCTGTGGGTTTCTCAAGAGTTACTGGAGttgcctctcctccttctctattCTATGTGTGTGCTGCTATTTATTTCTATTACCTCTATGAGGAACAGTGAccaagccctctctctctcttcatctctctatcaACTTCCACATAAGTCTTTACAAACAATTTCACAACCCTCCGTATTTTTCAACCTTAGAAGCCAGCTTCACAATGTCTAATTTTATTTTCCGAAGCAAAACAGGTTGGAGGAAACTCCAGTTTTTCTGTTTGCTCCCTGAGCTGCACCTTGGAATGCCATTCCGAGAGGTCCACATTCCGAAATCGGAATTGTCTTCTGAGTCAAAATATACCAGAATCTACTGCTGAAAGCTCGGCCTAACATGCTATATTTTTACTTTTCACTTCCTTCACCAGAACTGTTATGGCGGAGAGGCAAAGGATTGAGAAGAAGAGTTGGCTTGCATCTTGTCCATTGGTCAGATAAGAGTTGGACAGATTGTTGCCAGGTGTCTTTAGGTTGTAATAATGTAACACATTATgt

Function

NR:

description
PREDICTED: syntaxin-binding protein 4-like isoform X1

GO: NA

KEGG:

id description
K15302 STXBP4, SYNIP; syntaxin-binding protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956294.1 True 3720 mRNA 0.51 22 36437205 36540905

Neighbor

gene id symbol gene type direction distance location
LOC118942466 NA coding upstream 13344 36423746 ~ 36423861 (+)
LOC110499432 LOC106589856 coding upstream 189693 36207378 ~ 36247512 (+)
mrpl27 LOC106589850 coding upstream 257604 36173188 ~ 36179601 (+)
LOC110499428 LOC106589848 coding upstream 266306 36161203 ~ 36170899 (+)
LOC110499426 LOC106589844 coding upstream 279423 36125503 ~ 36157782 (+)
LOC110499435 LOC106589861 coding downstream 12974 36468873 ~ 36564830 (+)
LOC118942015 LOC106589862 coding downstream 37821 36578726 ~ 36592198 (+)
LOC110499541 ankfn1 coding downstream 154870 36695775 ~ 36809459 (+)
LOC110499437 nogg3 coding downstream 306398 36847303 ~ 36849071 (+)
LOC118942468 NA coding downstream 362925 36903830 ~ 36903945 (+)
G1690176 NA non-coding upstream 24703 36409242 ~ 36412502 (+)
G1690143 NA non-coding upstream 86645 36348843 ~ 36350560 (+)
G1690139 LOC106589859 non-coding upstream 91175 36344291 ~ 36346030 (+)
G1690134 NA non-coding upstream 102269 36334117 ~ 36334936 (+)
G1690106 NA non-coding upstream 151833 36285133 ~ 36285372 (+)
G1690231 NA non-coding downstream 15695 36556600 ~ 36557674 (+)
G1690232 NA non-coding downstream 18654 36559559 ~ 36560687 (+)
G1690233 NA non-coding downstream 19253 36560158 ~ 36560539 (+)
G1690234 NA non-coding downstream 23994 36564899 ~ 36602975 (+)
G1690237 NA non-coding downstream 26642 36567547 ~ 36569470 (+)
G1690116 NA other upstream 124507 36304939 ~ 36312698 (+)
G1690099 NA other upstream 161262 36275482 ~ 36275943 (+)
G1690092 NA other upstream 172224 36264660 ~ 36264981 (+)
G1689732 LOC106612293 other upstream 311815 36120616 ~ 36125390 (+)
G1689671 NA other upstream 555331 35881578 ~ 35881874 (+)
G1690753 NA other downstream 337146 36878051 ~ 36880738 (+)
G1691142 NA other downstream 1001015 37541920 ~ 37543265 (+)
G1691189 NA other downstream 1109721 37650626 ~ 37654064 (+)
G1691267 NA other downstream 1263638 37804543 ~ 37809061 (+)
G1691990 aatk other downstream 1681600 38222505 ~ 38222735 (+)

Expression


Co-expression Network