LOC110499435 (LOC106589861)


Basic Information

Item Value
gene id LOC110499435
gene name LOC106589861
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36468873 ~ 36564830 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956295.1
ACATATCTCGGTTTTCACATGGTATGAATGGGTGAACGGGACTAGGCTATCTCTGCCTTCTACTGTAGACTACAGAGCTATTGGAATAGCAGGTGTCACTGGAACCAGCTTTTCCCACTGGGTTTTATATCGGCAGTTGTTGAGGTCGAAATCGATCTGTGatttcgattttttttttttgatacaGTTGAACGTTTTGGATTTTGTATTAGCCCACCAGGAGCAAGTTAAGTGATTTTTTTTGACAGCTGAAGGGAGGCGAGATGGATAAAATAGTGTCCAGACATCTCCCGGGGAATCCAAGGTTTCTACCTATGTCGAATCACTGGGTATTGAAGTCTCTACTGGAGAACCCCATGAaactacccctcctcctccaacaacaTGAACCACAACATGAAGGATTTGAGAAGGagcaagagaaggagaagaagttGGATGAGGAGAGGAGTGCCCCCCAGTCAGCCTTCCTGGGGCCCACGCTGTGGAACAAGACTCTCCCCTACGATGGAGACAACTTCCAGCTGGAGTACATGGATCTGGACGAGTTCCTGTCGGAAAACGGCCTCCCCTCTGAACTCGCCGCCTCCACCCACCCCAACCAGTACCAATCACAGTCCCAGCACCAGACGTCAATCATGTCACAAGCCTTGCCCTCGGTGATCGACCTTAGCAACCATGCCAGCGCATCAACGTCGGTACACACAAGCATGGGCGCACAGAACTGTCTCCCTAGCCTCGCCAGAGCAGCCCTGCCGTCCAGAAATACTCCCAGCCCCATCGACCCAGAGTCCATCCAGGTGCCGGTGAGCTATGTGCCTGACCCTGCTGACTTGGTTTTGTCCAGCGTACCGGGACAGGAGATGTTCGACCCCCGCAAACGCAAGTTCGCCCCCGAGGAGCTCAAACCACAGCCCATGTTCAAGAAGGCCCGCAAGGTGTTATTGCCAGATGACTtgaagGATGACAGGTATTGGGTGAGGCGTAAGAAGAACAACGTGGCTGCCAAGAGGTCACGTGACGCCCGTCGACTCAAAGAAAACCAGATCGCCATCCGAGCGGGTTTCCTGGAGAAGGAGAACTCCGCCCTGAAAATGGAGGTGGCCGATCTGAGAAGAGAGCTTGGGCGCACAAAGAACATTGTGGCCGAGTACCAGGCCACACAGGGGCCTCTGTAATGGGACTGAGACAGAATACACTCACAAAGATGGagaatacacacacgcacgcacacacacacacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacccggccCTGTTGCCCAGCCCTCATTCATCCCTGAACACCCCCAGAAGCATGAGGTTGAGAGGCTGAGCTTACACCTGCCTGAGGCTACCACCCGATCAATGTCCTCCCTGCTCGAAAACTGACCCCACACACAACCTAGGAACTGCCTCCTACCATCTCACAACTCGTATCAAGAGATTGAAGGACAAAATTATTTAGGCTCAGTAGCACATTTCTACTCATTTTCTATACCATATATTTCATCCTCATCCATGTCTCTCTGTGATTGGCCCTTGTGAGGGAAAGCGGGTAGCTTTCTGTACTGTCTATGAGTAAGAAACGGAATGGGTTTATTTTATTTCCgatctgtgtgtgtttttcattTGGTTCTTTTCTTTCTGATGTAGTGTATCTGTCCACACATGGCTGTTGtgttattttctgtatttttcatGGCTTTTACTGAGGTGTTGTATTTTCTTATGAATGTGTATGTTGAATCTTATGTTACCtaccctcttccctctccctcttttctctggtTTCCATAGTGTAAATGTCAGTTGAGACGTCTCCCCCTGACGTTACCTGTCCCACTTTATCCACCTCCCTCCTCGTCTTCTTCTCCATCAGATAAATGCTGTTTGTAACGTGTAAACGATCACTGCCCTGCTCATACTTTAAAACCTCTCCCAGGCCTACATCCCGCTAGCCTGGGTGTCCGACTGTTTCTGCATTAACGCTACGCTACGTTATTGCCTTAGTGAGGCGGCAACATGTAGGATAAAGCAGAGACAGACCCGGCCGCCAGGCTATTACGATGTCAGCGTCATCGTTCTCATGTTCTTCTCATAGCAGTGTTATGTATAACAAAGGTTTGTTCCTAATTCTTTGGCACCAGATCACTCTGTTGGAACAGAACAAGTTCGGGAAGCTAAAGCCATAAGGCAGAATAAAGCTCTCGGTCTCCTCTCTACCAGGCCTACTGTCACACACGCATGAAACTGCCCTCGTTATTTTAGCACGTGCCCAATTTGCAATTGCTTTTATTAGTTGATATTGTGATATTTATGTCTTTACATAAAATCAGGCATGATTCTATTTGTTGTTCAAGCATTCAAATGTGAACATTATCAGCATCTGTGTCGTGAGGCAACAGTTTTTATTGTGTTCTTTTTCTTTTCTCAGGCTTGACTTCTCTGTGTCATGCTCTTGTCTACAGAGGTACGGTTGTCCCTATTGGGACTGCCTCTCAGTCCTGCCCAGATTGAAAGAATTCCTGCTGAGAATGAGGCTGTCCTGATATTAACACCGTACAGATGCTCTCCCCATGACCCAATGAGAGATGAATGTAACAGatgtactactgtatataacaaaTGAACACAGTGTACGTTGGGCAAATGAATGGTGTTGCCTATACAGGACTGTGGAATATACCCACATCACTTTATATATCTCTTTACTACAGACCAAAAGATGACAGTATAGAAAGGATATGTTATTATATGAAAGGTTTTGTTGTTTTTACAAAgatcttgtttttgtacagtATTTTTTTCCGTACATAAATCTCCTGTGTATATAAAAAAATGAACTATGTATATTCAGAACTTGTTCATCTCTACCGATGCTGTTTCTCAGATACTTTGCATGGGCATTACTCAAGACAACCTTACAAATGAAAGTGACAGGCTGTTTTACAGACCATATGAAAGTGGCAGGCTGTTTTACAGACCATATGAAAGTGTAGTCAGTCTCACTCTTTAACCCCTCACGCCCACCACAGACAAACTCAAAACGCTTTGCTGTTTTCGTCTTGAAAAGTTGTGTATGTCTTGTTGCGTTGTTTCTTTGCTTTGCAGAAGCTGAAGCTCTGTAGTCTAAGAGGAAGATTGATATTGGCATCCCTTTTTAAATTCTTATTTGTATTGTATGTAGTTTTGGTTTTTAGAAGAAAGTCAAATCCCAACAACAAGCGCGTGTGTTATGTCTCTTCTTAATTTCCCCCTTTTGTGTGATTATTCCTACTTTCCTCTTGGTGTAGGGTTCACTAGACAGAATACTTATAAGCTGATATGTTAAAAATCTTGTGTTTTTCCAAGTATTCCTCCCttgtcttttgtttgtttttcattaTCAAAATAAAACTGTTGAAATCA
>TU1933171
cttcacagatcttcattgtaaagggtttaaacactgtttccaatgcttcttcaatgaaccataaacaattaatgaacatgcacctgtggaacggttgttaagacactaacagcttacagacggtaggcaattaaggtcacagttatgaaaactaaggacactaaagaggcctttctactgactctgaaaaacaacaaaagaaagatgcccagggtccctgctcatctgtgtgaacgtgccttaggcatgctgcaaggaggcattaggactgcagatgtgaccagggcaataaattgcaatgtccgtactgtgagacgcctaagatagcgctacagggagacaggacggacagctgattgttcacacagtggcagaccatgtgtaacaaacctacacaggatcggtacatccgaacatcacacctgcgggacaggtacaggatggcaacaataactgcccgagttacaccaggaatgcacaatccctccatcagtgctcagactgtccgcaataggctgagagaggctggactgagggcttgtaggcctgttgtaaggcaggtcctcaccagacatctccggaaacaacatcgcctatgggcacaaacccaccgttgctggaccagacaggactggcaaaaagtgcttcactgacaagtcgcggttttgtctcaccaggggtgattattgtcgaaggaatgagcattacacagaggcctgtactctggagcgggatcaatttggaggtggatttttttttgaattttttttattttacctttatttaaccaggcaagtcagttaagaacaaattcttattttcaatgacggcctgggaacagtgggttaactgcctgttcaggggcagaacgacggatggtccgtcatggtctggggcgatgtgtcacagcatcatcgtactgagcttgttgtcattgcaggcattctcaacgctgtgcgttacagggaagacatcctcctccctcatGCTACCACCCGATCAATGTCCTCCCTGCTCGAAAACTGACCCCACACACAACCTAGGAACTGCCTCCTACCATCTCACAACTCGTATCAAGAGATTGAAGGACAAAATTATTTAGGCTCAGTAGCACATTTCTACTCATTTTCTATACCATATATTTCATCCTCATCCATGTCTCTCTGTGATTGGCCCTTGTGAGGGAAAGCGGGTAGCTTTCTGTACTGTCTATGAGTAAGAAACGGAATGGGTTTATTTTATTTCCgatctgtgtgtgtttttcattTGGTTCTTTTCTTTCTGATGTAGTGTATCTGTCCACACATGGCTGTTGtgttattttctgtatttttcatGGCTTTTACTGAGGTGTTGTATTTTCTTATGAATGTGTATGTTGAATCTTATGTTACCtaccctcttccctctccctcttttctctggtTTCCATAGTGTAAATGTCAGTTGAGACGTCTCCCCCTGACGTTACCTGTCCCACTTTATCCACCTCCCTCCTCGTCTTCTTCTCCATCAGATAAATGCTGTTTGTAACGTGTAAACGATCACTGCCCTGCTCATACTTTAAAACCTCTCCCAGGCCTACATCCCGCTAGCCTGGGTGTCCGACTGTTTCTGCATTAACGCTACGCTACGTTATTGCCTTAGTGAGGCGGCAACATGTAGGATAAAGCAGAGACAGACCCGGCCGCCAGGCTATTACGATGTCAGCGTCATCGTTCTCATGTTCTTCTCATAGCAGTGTTATGTATAACAAAGGTTTGTTCCTAATTCTTTGGCACCAGATCACTCTGTTGGAACAGAACAAGTTCGGGAAGCTAAAGCCATAAGGCAGAATAAAGCTCTCGGTCTCCTCTCTACCAGGCCTACTGTCACACACGCATGAAACTGCCCTCGTTATTTTAGCACGTGCCCAATTTGCAATTGCTTTTATTAGTTGATATTGTGATATTTATGTCTTTACATAAAATCAGGCATGATTCTATTTGTTGTTCAAGCATTCAAATGTGAACATTATCAGCATCTGTGTCGTGAGGCAACAGTTTTTATTGTGTTCTTTTTCTTTTCTCAGGCTTGACTTCTCTGTGTCATGCTCTTGTCTACAGAGGTACGGTTGTCCCTATTGGGACTGCCTCTCAGTCCTGCCCAGATTGAAAGAATTCCTGCTGAGAATGAGGCTGTCCTGATATTAACACCGTACAGATGCTCTCCCCATGACCCAATGAGAGATGAATGTAACAGatgtactactgtatataacaaaTGAACACAGTGTACGTTGGGCAAATGAATGGTGTTGCCTATACAGGACTGTGGAATATACCCACATCACTTTATATATCTCTTTACTACAGACCAAAAGATGACAGTATAGAAAGGATATGTTATTATATGAAAGGTTTTGTTGTTTTTACAAAgatcttgtttttgtacagtATTTTTTTCCGTACATAAATCTCCTGTGTATATAAAAAAATGAACTATGTATATTCAGAACTTGTTCATCTCTACCGATGCTGTTTCTCAGATACTTTGCATGGGCATTACTCAAGACAACCTTACAAATGAAAGTGACAGGCTGTTTTACAGACCATATGAAAGTGGCAGGCTGTTTTACAGACCATATGAAAGTGTAGTCAGTCTCACTCTTTAACCCCTCACGCCCACCACAGACAAACTCAAAACGCTTTGCTGTTTTCGTCTTGAAAAGTTGTGTATGTCTTGTTGCGTTGTTTCTTTGCTTTGCAGAAGCTGAAGCTCTGTAGTCTAAGAGGAAGATTGATATTGGCATCCCTTTTTAAATTCTTATTTGTATTGTATGTAGTTTTGGTTTTTAGAAGAAAGTCAAATCCCAACAACAAGCGCGTGTGTTATGTCTCTTCTTAATTTCCCCCTTTTGTGTGATTATTCCTACTTTCCTCTTGGTGTAGGGTTCACTAGACAGAATACTTATAAGCTGATATGTTAAAAATCTTGTGTTTTTCCAAGTATTCCTCCCttgtcttttgtttgtttttcattaTCAAAATAAAACTGTTGAAATCA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106569888, partial

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956295.1 False 3505 mRNA 0.45 4 36553879 36564830
TU1933171 True 3045 lncRNA 0.42 3 36468873 36564830

Neighbor

gene id symbol gene type direction distance location
LOC110499434 LOC106589860 coding upstream 12974 36437205 ~ 36540905 (+)
LOC118942466 NA coding upstream 130018 36423746 ~ 36423861 (+)
LOC110499432 LOC106589856 coding upstream 306367 36207378 ~ 36247512 (+)
mrpl27 LOC106589850 coding upstream 374278 36173188 ~ 36179601 (+)
LOC110499428 LOC106589848 coding upstream 382980 36161203 ~ 36170899 (+)
LOC118942015 LOC106589862 coding downstream 13896 36578726 ~ 36592198 (+)
LOC110499541 ankfn1 coding downstream 130945 36695775 ~ 36809459 (+)
LOC110499437 nogg3 coding downstream 282473 36847303 ~ 36849071 (+)
LOC118942468 NA coding downstream 339000 36903830 ~ 36903945 (+)
LOC118942068 NA coding downstream 341820 36906650 ~ 36909570 (+)
G1690222 NA non-coding upstream 19011 36529996 ~ 36534868 (+)
G1690176 NA non-coding upstream 141377 36409242 ~ 36412502 (+)
G1690143 NA non-coding upstream 203319 36348843 ~ 36350560 (+)
G1690139 LOC106589859 non-coding upstream 207849 36344291 ~ 36346030 (+)
G1690134 NA non-coding upstream 218943 36334117 ~ 36334936 (+)
G1690234 NA non-coding downstream 69 36564899 ~ 36602975 (+)
G1690237 NA non-coding downstream 2717 36567547 ~ 36569470 (+)
G1690486 NA non-coding downstream 46506 36611336 ~ 36611608 (+)
G1690499 NA non-coding downstream 53584 36618414 ~ 36618881 (+)
G1690116 NA other upstream 241181 36304939 ~ 36312698 (+)
G1690099 NA other upstream 277936 36275482 ~ 36275943 (+)
G1690092 NA other upstream 288898 36264660 ~ 36264981 (+)
G1689732 LOC106612293 other upstream 428489 36120616 ~ 36125390 (+)
G1689671 NA other upstream 672005 35881578 ~ 35881874 (+)
G1690753 NA other downstream 313221 36878051 ~ 36880738 (+)
G1691142 NA other downstream 977090 37541920 ~ 37543265 (+)
G1691189 NA other downstream 1085796 37650626 ~ 37654064 (+)
G1691267 NA other downstream 1239713 37804543 ~ 37809061 (+)
G1691990 aatk other downstream 1657675 38222505 ~ 38222735 (+)
LOC110499426 LOC106589844 coding upstream 311091 36125503 ~ 36157782 (+)
G1690106 NA non-coding upstream 183501 36285133 ~ 36285372 (+)

Expression


Co-expression Network