LOC118942015 (LOC106589862)


Basic Information

Item Value
gene id LOC118942015
gene name LOC106589862
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36578726 ~ 36592198 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955562.1
ATGGGGAACGCTGCTGCCACACCTCTGTCTCCTGAATCCGACACCAACAAGGTTCTCATCCCCTTCCCCACTGTCCAGACACCTTCCACTCCCCCACTGTCCAGCCCCCTCCCCTACATTCCAGCCTTTCCCACTGTCCAGCCCCCTCCACTACTTTCCAGCCCTTCCAACTTCCCTACTGTCCAGCCCCCTCCCCCACTGTCCAGCTCCCCCCACTCCCCCAATGTCCAGCCCCTCCCACTCCCCCACTGTCCAGTCCCTCCCACTTCCCCACTGTCCAGCCCCTCCCACTCCCCCACTGTCCAGCTCCCTCCGACTTCCCCACTGTCCAGCCCCTCCCACTTCCCCACTGTCCAGTCCCTTCCCACTCCCCCTCCCCTACTTTCCAGCCCTTCCCACTTCCCTACTGTCCAGCCCCCTCCCCCACTGTCCagctccctcccactcccccacTGTCCAGTCCCCTCCCACTCCCCCACTGTCCAGCTCCCTCCGACTTCCCCACTGTCCAGCCCCTCCCACTTCCCCACTGTCCAGCCCCCCCCACTCCCCCACTGTCCAGCTCCCTCCGACTTCCCCACTGTCCAGCCCCTCCCACTTCCCCACTGTCCAGTCCCTTCCCACTCCCCCTCCCCTACTTTCCAGCCCTTCCCACTTCCCTACTGTCCAGCCCCCTCCCCCACTGTCCAGCGCCCTTCTACTCCCCCACTGTCCAGCCCCCTCCTCCCCTACTGTCCAGCCCCCTTCCCCTCCTCACTGTCCAGCGCCCTCCCCCACTGTCCAGTCCCCTCCCACTCCCCCACTGTCGAGTCCCCTTCCCCAATGTCCAGCCCCTCCCACTCCCCCACTGTCCAGTCCCTCCCACTTCCCCACTGTCCAGCCCCTCCCACTCCCCCACTGTCCAGCTCCCTCCGACTTCCCCACTGTCCAGCCCCTCCCACTTCCCCACTGTCCAGTCCCTTCCCACTCCCCCTCCCCTACTTTCCAGCCCTTCCCACTTCCCTACTGTCCAGCCCCCTCCCCCACTGTCCagctccctcccactcccccacTGTCCAGTCCCCTCCCACTCCCCCACTGTCCAGCTCCCTCCGACTTCCCCACTGTCCAGCCCCTCCCACTTCCCCACTGTCCAGCCCCTCCCACTCCCCCACTGTCCAGCTCCCTCCGACTTCCCCACTGTCCAGCCCCTCCCACTTCCCCACTGTCCAGTCCCTTCCCACTCCCCCTCCCCTACTTTCCAGCCCTTCCCACTTCCCTACTGTCCAGCCCCCTCCCCCACTGTCCAGCGCCCTTCTACTCCCCCACTGTCCAGCCCCCTCCTCCCCTACTGTCCAGCCCCCTTCCCCTCCTCACTGTCCAGCGCCCTCCCCCACTGTCCAGTCCCCTCCCACTCCCCCACTGTCGAGTCCCCTTCCCCACTGTCCAGACACCTCCCACTCCCCCACTGTCCAGCCCCCTCCCCTACTTTCCAGCCTTTCCCACTGTCCAGCCCCCTCCACTACTTTCCAGCCCTTCCCACTTCCCCACTGTCCAGCCCCTCCCACTTCACCACTGTCCGGCCCCTCCCACTCCCCCACTGTCCAGCCCCTCCCACTCCCCCAAAGATGA
>TU1933264
CTTAAGTTTATTGGCACAAATATTCAAAATACATGGCAATGGATATGGCATAAATAACATGAAAATACAACTTTACCAGAGTACAATGCTATATTTGTTAACAATTTTCAATGAAACTACAACTTGCTTAGCCACAGCTCTGGTCTAACAATGAAAAACTGCATATTTGGCACAACATGTATTAAATGAATCAATTGTATGCATACTAGGCAGTTACAAAGGTATGTGGTATTGTTATTTAAAATGTTGAGCACTGTTTTGAAAGGAAGCATTAAAAGCTGTGCATATCGAACTTGAGAGAGATACTTTGACTTCATTAGGCAATCACTTCCTATAAGTTCCCTTTACATTGTCATAGTGAGCTTTGACCGTGAAAAGTCAGCCAGTCTACTATTTATCTAAAACATAACATTAAGTACCTATTACATGTTCACTTGAAACATCAACAGAGCAGCAATAGAGTCACAGATACATCACGTGATGTGCATGAGAATAGTAGAATGGAGAATCATGGTCCACCGTGTAACAATCCTTTCTGCTCCAGGATGAAGTTTctcctaggtacagatctaggatcagcttctcctCCCCcaatctaaccttaaccattagtgagGAAAATGCAAAAATGACTCAAGATTAgaatctaggggcaacttcaccctacttcATCCTTACTTTCCAATAACTCATCTTTGGATACTCCCTATTTACCTCCATGATCGTGATCCTGGTCTTTTCAAATGTCCAGGGAGAACAAACCACCAGAATTTCAGATAGTATTTTAGCTACAGAACAGCTAGTCTTTCCagcaggggttggaaccggttcagggaacagaaccgaaaaAACTGAAAATAACGTAATATTACAAGGAACAGAAACAGAACCGGGAACGAAAGGGATCcatactgttccggaacagaaccgttatttgaaaagcatgggaaccggtaAATAACGTTATTTTATGTtccaaacatttttttaaagttttttctAAACACAACAAAgcacctatgcaaagccctcactctgtcactcagaaacctattccagtgtctgcctgcaaaCTGAAAAtttgcccgtgtgtgtgtgtgtgtttaggctaTCTGCCCCGCCCTCCTccgaagcataggctactgtactgacgttagcATAGGCTACTGACTGACATTACAAGCGGAATtcagaagatagggagagagatttttAATCAGTTAGAGAAGAATGGATGAACTTGTTCAATGCTAGATACTAAATGCCTAGTTAtcacgtttcacattggatttattaactagaAAAAGGTAAGACGTATTTTTTAATTCTggtgcatacacacacaagcttgttagatagctagctcaaacttgttagctaactagctcaAACGACATTCAAtgttcctccatagaagccgcTCCTCATAGGTATAACTCTGTGGACCTAAATTCAGAtcatgcatgtcataacaagatgcatAGCACTTCAAGCCTCTTCCTCAACCCTCTGTCGCTCTCGCCGCAATATTTCAGTCGCATCTTACGCCACTTGTTTGTCACCTAGCTTGCCTGCTCCATCCACACTGATTGGTAAAGTAATTTAATGAGCTAAATGTAAACAACTGTTGATTTgaaggaacagaaaggaacgatataaaactgtacttttttggGGTTCGAAccagttcagaactttattttgctggttgTAAAGGCGAAACAGAATGAAAAAAATATGGGTCAACATTTGGAAATTAATTTCAGTTCCAACTCCTGCTTTCTAGGCACATAGTCTCACCTACAAAGCAGCTAGACTTTCCAGCCCATTCTAGTCCTTCAGCTAAGTATCTGTTTTTGATAATGTGTGAGTCCTTCATACCCAACTAGCTCAGACATCCCTCAACTCTCTCCAGTCTCTTGTCATTCGATACCTTTTTGTTCAAACATTTAACAGTCCCACTGTTCCACTGTCCATGTCGCCCCCTCAGGCCACAGCGGCACCTTGACTACAAATTGTTGAAACTTCAAACTTTAAcagtccctctcttccctcaggGCTCAGACCACGCATAGTCCATGGTTGGCCATGAGGGCCGTCTGACTCTCCCTCCTCCGGTCCTTCTTCCTCCCAAGCCGGACCCTCCAGCAGACAGCACTGGACCCCAGGAGGGCTAGCCCAGCCGACAGCAGAACCAGCCCCAGCACCGAGATGGTGGAGCCGTGGGAGTTGAACGTGTACGCCACGGCCGTTACCACAATACCGGCGATAAGGACCACCACGCCAAATGGCACGGTGCACCGGTAGCACGACATCTCTGCCCCGCCGGTGGCCGCTGTCAGCTGCACCTCGTTGATTAATGGGACGGTCGTCACAACAACGCTACGGTCCttcttgttgtggttgttgttgttggattTCTCTGTAGTGACTTTCTCAGAGGTAGATGTGGGCATGTTCATGGCGCTTTTGGGGGCTTTCGGTGCATTTTTATTGATAGAGTCATCTGGAATAGAGATTTTGCTGGCTAGGAAAAGGTGGGCCATCTTGACTTTCAGTGGTCAACCTGTCAATCTGTGTGGCCTTCTCTGTCGATGTCCACTGAGATGCGATGCAATATATCGAAGTCTTGCTCGAGCACGCGCGTTATGGAGATTTTTTGGGGTCTGTCGATAAAAATG

Function

NR:

description
PREDICTED: transmembrane protein 100-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955562.1 False 1611 mRNA 0.66 3 36578726 36584090
TU1933264 True 2681 lncRNA 0.43 2 36583542 36592198

Neighbor

gene id symbol gene type direction distance location
LOC110499435 LOC106589861 coding upstream 13896 36468873 ~ 36564830 (+)
LOC110499434 LOC106589860 coding upstream 37821 36437205 ~ 36540905 (+)
LOC118942466 NA coding upstream 154865 36423746 ~ 36423861 (+)
LOC110499432 LOC106589856 coding upstream 331214 36207378 ~ 36247512 (+)
mrpl27 LOC106589850 coding upstream 399125 36173188 ~ 36179601 (+)
LOC110499541 ankfn1 coding downstream 111685 36695775 ~ 36809459 (+)
LOC110499437 nogg3 coding downstream 263213 36847303 ~ 36849071 (+)
LOC118942468 NA coding downstream 319740 36903830 ~ 36903945 (+)
LOC118942068 NA coding downstream 322560 36906650 ~ 36909570 (+)
LOC110499440 NA coding downstream 330234 36914324 ~ 36916187 (+)
G1690237 NA non-coding upstream 9256 36567547 ~ 36569470 (+)
G1690232 NA non-coding upstream 18039 36559559 ~ 36560687 (+)
G1690233 NA non-coding upstream 18187 36560158 ~ 36560539 (+)
G1690231 NA non-coding upstream 21052 36556600 ~ 36557674 (+)
G1690486 NA non-coding downstream 27246 36611336 ~ 36611608 (+)
G1690499 NA non-coding downstream 34324 36618414 ~ 36618881 (+)
G1690512 NA non-coding downstream 43393 36627483 ~ 36627746 (+)
G1690519 NA non-coding downstream 47495 36631585 ~ 36631811 (+)
G1690521 NA non-coding downstream 53606 36637696 ~ 36638002 (+)
G1690116 NA other upstream 266028 36304939 ~ 36312698 (+)
G1690099 NA other upstream 302783 36275482 ~ 36275943 (+)
G1690092 NA other upstream 313745 36264660 ~ 36264981 (+)
G1689732 LOC106612293 other upstream 453336 36120616 ~ 36125390 (+)
G1689671 NA other upstream 696852 35881578 ~ 35881874 (+)
G1690753 NA other downstream 293961 36878051 ~ 36880738 (+)
G1691142 NA other downstream 957830 37541920 ~ 37543265 (+)
G1691189 NA other downstream 1066536 37650626 ~ 37654064 (+)
G1691267 NA other downstream 1220453 37804543 ~ 37809061 (+)
G1691990 aatk other downstream 1638415 38222505 ~ 38222735 (+)

Expression


Co-expression Network