LOC110499436 (LOC106589862)


Basic Information

Item Value
gene id LOC110499436
gene name LOC106589862
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36583534 ~ 36592764 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576579.2
TATCCCCAGCATGATTCTCCAAGACGTTGTAGACCAGATCATGGAAAAGAGACACAGCTTTCTAGACATGACTGCGCTCGTTTAGAACATCCGCTGCCTGCACGGTACACGGACACCGTACAGAGAGATTAGAAGTGAGTGAAATAAACGGTGCTAGGCTCTATAATGTATCTAATTCTGGGAAAACCTCTGCGCATATAACACATTTCCATGCGCTCGTGTGAAAGGTAAACAGGAGAGTCGTATATTATATCTGTATttggaggggaaaaaaactaactGATAACGGTCAAAAAACGAACGGATGACATGACAGACAACTTCAAGAACGAGATGAGAGTGAACAGACTGACGGTCGCATTCCGTTACTCCAAAGACGCACTCGAGAACGTCAGAGAATGAAAAGAGCTCCAGAATACAGCCACACAGATTGACAGGTTGACCACTGAAAGTCAAGATGGCCCACCTTTTCCTAGCCAGCAAAATCTCTATTCCAGATGACTCTATCAATAAAAATGCACCGAAAGCCCCCAAAAGCGCCATGAACATGCCCACATCTACCTCTGAGAAAGTCACTACAGAGAaatccaacaacaacaaccacaacaagaaGGACCGTAGCGTTGTTGTGACGACCGTCCCATTAATCAACGAGGTGCAGCTGACAGCGGCCACCGGCGGGGCAGAGATGTCGTGCTACCGGTGCACCGTGCCATTTGGCGTGGTGGTCCTTATCGCCGGTATTGTGGTAACGGCCGTGGCGTACACGTTCAACTCCCACGGCTCCACCATCTCGGTGCTGGGGCTGGTTCTGCTGTCGGCTGGGCTAGCCCTCCTGGGGTCCAGTGCTGTCTGCTGGAGGGTCCGGCTTGGGAGGAAGAAGGACCGGAGGAGGGAGAGTCAGACGGCCCTCATGGCCAACCATGGACTATGCGTGGTCTGAGCcctgagggaagagagggactgTTAAAGTTTGAAGTTTCAACAATTTGTAGTCAAGGTGCCGCTGTGGCCTGAGGGGGCGACATGGACAGTGGAACAGTGGGACTGTTAAATGTTTGAACAAAAAGGTATCGAATGACAAGAGACTGGAGAGAGTTGAGGGATGTCTGAGCTAGTTGGGTATGAAGGACTCACACATTATCAAAAACAGATACTTAGCTGAAGGACTAGAATGGGCTGGAAAGTCTAGCTGCTTTGTAGGTGAGACTATGTGCCTAGAAAGCAGGAGTTGGAACTGAAATTAATTTCCAAATGTTGACCCATATTTTTTTCATTCTGTTTCGCCTTTAcaaccagcaaaataaagttctgaactggTTCGAACCccaaaaaagtacagttttatatcgttcctttctgttccttcAAATCAACAGTTGTTTACATTTAGCTCATTAAATTACTTTACCAATCAGTGTGGATGGAGCAGGCAAGCTAGGTGACAAACAAGTGGCGTAAGATGCGACTGAAATATTGCGGCGAGAGCGACAGAGGGTTGAGGAAGAGGCTTGAAGTGCTatgcatcttgttatgacatgcatgaTCTGAATTTAGGTCCACAGAGTTATACCTATGAGGAgcggcttctatggaggaacaTTGAATGTCGTTtgagctagttagctaacaagtttgagctagctatctaacaagcttgtgtgtgtatgcaccAGAATTAAAAAATACGTCTTACCTTTTtctagttaataaatccaatgtgaaacgtgaTAACTAGGCATTTAGTATCTAGCATTGAACAAGTTCATCCATTCTTCTCTAACTGATTaaaaatctctctccctatcttctgaATTCCGCTTGTAATGTCAGTCAGTAGCCTATgctaacgtcagtacagtagcctatgcttcggAGGAGGGCGGGGCAGAtagcctaaacacacacacacacacgggcaaaTTTTCAGtttgcaggcagacactggaataggtttctgagtgacagagtgagggctttgcataggtgcTTTGTTGTGTTTagaaaaaactttaaaaaaatgtttggaACATAAAATAACGTTATTtaccggttcccatgcttttcaaataacggttctgttccggaacagtatgGATCCCTTTCGTTCCCGGTTCTGTTTCTGTTCCTTGTAATATTACGTTATTTTCAGTTttttcggttctgttccctgaaccggttccaacccctgctGGAAAGACTAGCTGTTCTGTAGCTAAAATACTATCTGAAATTCTGGTGGTTTGTTCTCCCTGGACATTTGAAAAGACCAGGATCACGATCATGGAGGTAAATAGGGAGTATCCAAAGATGAGTTATTGGAAAGTAAGGATgaagtagggtgaagttgcccctagattcTAATCTTGAGTCATTTTTGCATTTTCctcactaatggttaaggttagattgGGGGaggagaagctgatcctagatctgtacctaggagAAACTTCATCCTGGAGCAGAAAGGATTGTTACACGGTGGACCATGATTCTCCATTCTACTATTCTCATGCACATCACGTGATGTATCTGTGACTCTATTGCTGCTCTGTTGATGTTTCAAGTGAACATGTAATAGGTACTTAATGTTATGTTTTAGATAAATAGTAGACTGGCTGACTTTTCACGGTCAAAGCTCACTATGACAATGTAAAGGGAACTTATAGGAAGTGATTGCCTAATGAAGTCAAAGTATCTCTCTCAAGTTCGATATGCACAGCTTTTAATGCTTCCTTTCAAAACAGTGCTCAACATTTTAAATAACAATACCACATACCTTTGTAACTGCCTAGTATGCATACAATTGATTCATTTAATACATGTTGTGCCAAATATGCAGTTTTTCATTGTTAGACCAGAGCTGTGGCTAAGCAAGTTGTAGTTTCATTGAAAATTGTTAACAAATATAGCATTGTACTCTGGTAAAGTTGTATTTTCATGTTATTTATGCCATATCCATTGCCATGTATTTTGAATATTTGTGCCAATAAACTTAAGACACAAAA

Function

NR:

description
PREDICTED: transmembrane protein 100-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576579.2 True 3011 mRNA 0.43 2 36583534 36592764

Neighbor

gene id symbol gene type direction distance location
LOC110499433 LOC106589859 coding downstream 195862 36344254 ~ 36387672 (-)
LOC110499540 LOC106589857 coding downstream 247082 36258019 ~ 36336452 (-)
LOC110499429 LOC106589855 coding downstream 387084 36181083 ~ 36196450 (-)
LOC110499427 LOC106612293 coding downstream 458097 36120507 ~ 36125437 (-)
LOC118942067 NA coding downstream 466117 36115578 ~ 36117417 (-)
LOC110499438 LOC106589865 coding upstream 299082 36891846 ~ 36896982 (-)
LOC110499441 LOC106589863 coding upstream 327414 36920178 ~ 36935086 (-)
LOC118942469 NA coding upstream 353502 36946266 ~ 36946381 (-)
LOC110499443 rbfox3 coding upstream 463189 37055953 ~ 37197149 (-)
LOC110499449 LOC106589899 coding upstream 1624113 38216877 ~ 38320114 (-)
G1690457 NA non-coding downstream 14350 36566341 ~ 36569184 (-)
G1690423 NA non-coding downstream 18751 36559044 ~ 36564783 (-)
G1690422 NA non-coding downstream 33298 36538269 ~ 36550236 (-)
G1690367 NA non-coding downstream 163526 36418789 ~ 36420600 (-)
G1690359 NA non-coding downstream 179475 36403777 ~ 36404059 (-)
G1690494 LOC107712493 non-coding upstream 22833 36615597 ~ 36615810 (-)
G1690503 NA non-coding upstream 27123 36619887 ~ 36620277 (-)
G1690504 NA non-coding upstream 28200 36620964 ~ 36621210 (-)
G1690505 NA non-coding upstream 29326 36622090 ~ 36622404 (-)
G1690506 NA non-coding upstream 29770 36622534 ~ 36622757 (-)
LOC110499416 dnah17 other downstream 716750 35864651 ~ 35951415 (-)
G1689556 NA other downstream 939757 35643368 ~ 35643777 (-)
G1689461 NA other downstream 1103477 35478114 ~ 35480057 (-)
G1690649 NA other upstream 109782 36702546 ~ 36703441 (-)
G1690696 NA other upstream 216935 36809699 ~ 36810143 (-)
G1691432 NA other upstream 646063 37238827 ~ 37239310 (-)
G1692288 cnrg other upstream 1890131 38478761 ~ 38485362 (-)

Expression


Co-expression Network