LOC110499437 (nogg3)


Basic Information

Item Value
gene id LOC110499437
gene name nogg3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36847303 ~ 36849071 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576580.2
GCCAGTGCATCATCTAGCCCTAGACAACATGCGGACACCCAGAAACCAACAGGACCCAACTCTAAGACTAGTGAGAAACCAGGACCTGACGCACTTTACGCACGGGAAAGCCCAGTGGAAATGCAGCCAGGGCGAATCATGCTACTGACACCGCTGGGTCTGGTATAACGTTTTCGTTGAAAGTGCTTTGAATGTGCGTTTTTTTCTTCCAGTGAAGGCAGTGAAGGGCTACGTTCTATCCATTCAGACGTGTGTCATGGACTCTAAAGTTACGCAGCGAAACTCTCCACTGGCTCAGGGCATCAACTTTCCTCTCTCAGACTGCAATCACCGGTTGCTATGGTGACTAAATTCCAGCCAGCTGAAACTTTTTGAGGCATGTTTTTTCGCGGAGTTTGAGAAACAGATCACCGGTTGGAGCGCGTGCGTGACGACGGGCGCTGGACTACGGGGTGCCACGGGactccacacgcacacacacttacaccgACCCCCGGGGGAAAACGGATGATCGTTTCTACCGTATAAGGATTCTACTTTTTATATTGTACTCTATATCATTTGGAACTATTGTTACCAGATAGAGATATGGATAACTCGTACTGTTTCCTGGCCATGTCCATGCTGGTTCTGTCCCTCGGGTTTAGGATAGAGGAGGGCATGTGCCAACACTACTACCTCCTCCGTCCCATCCCCAGCGACACTCTCCCTATAGTGGAGCTCAAAGAGGACCCAGACCCTGTCCTGGATCCGAAAGAACGGGACCTGAACGAGACCGAACTAAGATCCAACTTGGGTAGTCACTTCGACCCCCACTTCATGTCCATCACCCCGCCAGAGGACAAGTACTCGGGCAACGAGGACCTGGGCGACTCAGAGATGCGTCAGAAGCCATCCGTCGCGATGCCCAAAGAGATCAAAGCCATGGAGTTTGAGATCCAGCAAGGCAAGAAGCACAAGCCCAGTAAAAAACTCAGAAGAAGGCTGCAACTGTGGCTGTGGTCTTACACCTTCTGTCCAGTTGTTTATACATGGAACGACCTCGGGAACAGATTCTGGCCGCGCTACGTGAAGGTGGGGAGCTGCTACACTAAGCGTTCTTGTTCGGTCCCTGAAGGGATGCTTTGCAAACCTGCCAAATCGGCCTATTTTACGATCTTAAGATGGAGGTGCCTGCAGAGAAAAGGAGGTCTGAAATGCGCTTGGATACCAGTTCAGTACCCCATTATATCTGAGTGCAAATGCTCCTGCTCGAACTGAAATAAACTGAAATGatttttttgttattattatttcttaaaaaaaaaaaaaaatcatagttacatgattgttttttatatgcACTGCCAAGTGTAAGAATGTATATTTTATGTGTATGTGGCGCCATTTAATTTTATGATGACACACTTTGTAGAAAGGTCAGTATTATTATTACAATATAACCAGCATCTACTGTATTTGTTGAACATATCTTGAATGTGATGTATCTTTATATTTATATTGAAAAAGAGCACTTCGCATTGCGAACCATTAAAATACTATTATTGGAGGACTTAACAGCTATTTTCCATTGTTTGGGAAGAAAAAATAAATACGTGGTTTTATTGACCTCTGATGTGGCAAAATTAGCCCAAATGTAAATTGAGCTTGTGAAACTGGATAAAGGGAAGGTTGGTGGGTAAATAATGTAAAATAAGAGTACCTGCCAACCTATTTATGCTTTATGTTTCATGTAGCCACAGTTCAAATAAACCCACACAGATGACACT

Function

NR:

description
noggin-3-like

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0035844 cloaca development biological_process
GO:0051216 cartilage development biological_process
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0045596 negative regulation of cell differentiation biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0005576 extracellular region cellular_component

KEGG:

id description
K04658 NOG; noggin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576580.2 True 1769 mRNA 0.45 1 36847303 36849071

Neighbor

gene id symbol gene type direction distance location
LOC110499541 ankfn1 coding upstream 37844 36695775 ~ 36809459 (+)
LOC118942015 LOC106589862 coding upstream 263213 36578726 ~ 36592198 (+)
LOC110499435 LOC106589861 coding upstream 282473 36468873 ~ 36564830 (+)
LOC110499434 LOC106589860 coding upstream 306398 36437205 ~ 36540905 (+)
LOC118942466 NA coding upstream 423442 36423746 ~ 36423861 (+)
LOC118942468 NA coding downstream 54759 36903830 ~ 36903945 (+)
LOC118942068 NA coding downstream 57579 36906650 ~ 36909570 (+)
LOC110499440 NA coding downstream 65253 36914324 ~ 36916187 (+)
LOC118942467 NA coding downstream 69465 36918536 ~ 36918651 (+)
LOC110499442 LOC106589867 coding downstream 116106 36965177 ~ 36985560 (+)
G1690531 NA non-coding upstream 33720 36811965 ~ 36813583 (+)
G1690615 NA non-coding upstream 50934 36795942 ~ 36796369 (+)
G1690614 NA non-coding upstream 52668 36794217 ~ 36794635 (+)
G1690593 NA non-coding upstream 83941 36763150 ~ 36763362 (+)
G1690747 NA non-coding downstream 9708 36858779 ~ 36860426 (+)
G1690757 NA non-coding downstream 34925 36883996 ~ 36884998 (+)
G1690772 NA non-coding downstream 57865 36906936 ~ 36916416 (+)
G1690801 NA non-coding downstream 106777 36955848 ~ 36957193 (+)
G1690810 NA non-coding downstream 124622 36973693 ~ 36973911 (+)
G1690116 NA other upstream 534605 36304939 ~ 36312698 (+)
G1690099 NA other upstream 571360 36275482 ~ 36275943 (+)
G1690092 NA other upstream 582322 36264660 ~ 36264981 (+)
G1689732 LOC106612293 other upstream 721913 36120616 ~ 36125390 (+)
G1689671 NA other upstream 965429 35881578 ~ 35881874 (+)
G1690753 NA other downstream 28980 36878051 ~ 36880738 (+)
G1691142 NA other downstream 692849 37541920 ~ 37543265 (+)
G1691189 NA other downstream 801555 37650626 ~ 37654064 (+)
G1691267 NA other downstream 955472 37804543 ~ 37809061 (+)
G1691990 aatk other downstream 1373434 38222505 ~ 38222735 (+)

Expression


Co-expression Network