LOC118942068


Basic Information

Item Value
gene id LOC118942068
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36906650 ~ 36909570 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038001.1
TGCACAGGAGATTTTAGTAGagtaattttacatctaactCTGATATTTGGTGCAGTATTTATAAATGGAAAAATGTGCATCTAAATGAGTTCTCTCATTGattgacaacaaagactttactGAAGAATCCCTTCTGTTGACCAATCAGCGACGAATGAGTGTACTCTGTGGCTACCGATTTCCGCTTGTCTCaagaaaaaatgtgtgtgtgcccCAACAACCAAAAAACTCTTACCTAAGTACAAAACGAAAAGAAAAAcaacgtcacaaaatgtcatcataatacACAGTATGCACATGGGAACGCATGCGGACGCCTTCAGGCTACTAGAACAGGGCTCGGTGAGAATGTGACGCCCTTACTGGGGTCGCGTTAAGTGTGGAGGTGGAGTTACTGAGGTTGAAGATTCCTGGTGTCTGTGATGCCCGCTGTTTGGTGCGACGCAGACCCGGTGGTAAATAGTGATACTCTCTAAACTGCTCTGGCGACAAAACAAACCGTGTTGCCCTGTCTCCAATCATCCACATGgctgggagaacctattcaaAGAGCTGTGAAAGCctgtct
>XR_005038002.1
GTGGTTTAACAGAGGAGTAACTGTCATTTTGAGTCAGAGTCTCTACCTGACAAAGTCATGTTAGGATATATCAGTTATCCTGTTAGAAccttatacagtatcatacctgttAGAACCTTTATGTGGAATccactgttctgtttcagctgcaACGTTTATGGTCACGtcgcagcagttgttgttggagGGAGATTCCAAAATGTGGGGAATGTGTAGGAGGGCATGGGATAGAGAATTGTGTAGTTTCGGTGGATAACGTTGTGTGTGTCAACTATAGGGATGCCCATTGTTTAACTGCCTTAACTTTGCCGCACCCCAGGGCTAATGGGGATTGTGAGGGGGGAAATTACGTATTTATTTGATATTACTGGTTAACAATTAATATTTAACTAATAGTAAGTCATTTCTGTCCTACTAGTGTCTGTGTTTTTATGGTCTCCACTCTACAgtatttcactgcagctaatctGGGCGTATGGTCACTGGAGATGGCCTGAGCTGACAAATGAGTTACACACTGCATTACATAGACAAGAATGTGTTTAACTAGGGATAGTTTAGGAGTAGAACAATCCCTTATTGTCTCTAACTCGTTTTTGCATCTGGGAAACTGAACCAGGGTGGGGTTAAGACAACAACCCTGTGCAGAAAACGACCGGATGAACCCAGAGTGGTTTATGATGCCCCAATCTGCATGGGATAGGTGGAACCAATCATGACTAAGTATTttcgccgtgattggctcagtgttctgtcactcattggGACATTATGTCACCAccgaatctacagggagagctaggcagttcaagcccccttgggtgctgcAATAGAattgcccatccaagaaggctcaaggacTGATCATATCAACATGATACTTTCACAATCTTAGCTATCAAGCTAGACAAGCGGTCATCATCTTGAATCACgtcaacaatctactggaaaATCCTTGTCAAATGAAGAGatattatagataaaacgtatcggtgctcttCGACCATTGgatataaacattacacaagtcgGAAATTGCAAATAAAATAACGAGTGGTTTAGAACTAACCAATGGCAAGCGTAGCCTGCTAttcggtggagagggtgtgtggtccggGTTTAAGGAGTCAAAACATCTGTCTGAAATGATCTCTTTTCCAatcttaaaaggataaacatccacatgcaacaccatgggccagaaaaggttgaatgcaggttcaatccagcatgacttctgccgcgttcaacacaactgggaactctgaaagaAACCAACTCGGACTGGGAAAATAGTTCGGGAACTCGGGCctttttctagagctccgacttgaAGATCACAAACATTATGTTTcaactttttttctctctctctcgagttCCCAGTCTTGAATAAATCATAAATCCAGAGCAtgtcagactttgatgacaaaagtTTGCCCACAGGAAGACCGCCGCGCCACGTTCAAATGAGCACATTACAACAACAGTAAATAGTGATACTCTCTAAACTGCTCTGGCGACAAAACAAACCGTGTTGCCCTGTCTCCAATCATCCACATGgctgggagaacctattcaaAGAGCTGTGAAAGCctgtct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038001.1 False 568 mRNA 0.44 3 36906650 36909570
XR_005038002.1 True 1602 mRNA 0.43 3 36907111 36909570

Neighbor

gene id symbol gene type direction distance location
LOC118942468 NA coding upstream 2705 36903830 ~ 36903945 (+)
LOC110499437 nogg3 coding upstream 57579 36847303 ~ 36849071 (+)
LOC110499541 ankfn1 coding upstream 97191 36695775 ~ 36809459 (+)
LOC118942015 LOC106589862 coding upstream 322560 36578726 ~ 36592198 (+)
LOC110499435 LOC106589861 coding upstream 341820 36468873 ~ 36564830 (+)
LOC110499440 NA coding downstream 4754 36914324 ~ 36916187 (+)
LOC118942467 NA coding downstream 8966 36918536 ~ 36918651 (+)
LOC110499442 LOC106589867 coding downstream 55607 36965177 ~ 36985560 (+)
LOC110499446 LOC106589902 coding downstream 1166403 38075973 ~ 38081270 (+)
LOC110499447 LOC106589900 coding downstream 1174325 38083895 ~ 38203970 (+)
G1690757 NA non-coding upstream 21652 36883996 ~ 36884998 (+)
G1690747 NA non-coding upstream 46224 36858779 ~ 36860426 (+)
G1690531 NA non-coding upstream 93067 36811965 ~ 36813583 (+)
G1690615 NA non-coding upstream 110281 36795942 ~ 36796369 (+)
G1690801 NA non-coding downstream 46278 36955848 ~ 36957193 (+)
G1690810 NA non-coding downstream 64123 36973693 ~ 36973911 (+)
G1690804 NA non-coding downstream 76697 36986267 ~ 36986774 (+)
G1690805 NA non-coding downstream 77505 36987075 ~ 36987231 (+)
G1690931 NA non-coding downstream 132666 37042236 ~ 37042577 (+)
G1690753 NA other upstream 25912 36878051 ~ 36880738 (+)
G1690116 NA other upstream 593952 36304939 ~ 36312698 (+)
G1690099 NA other upstream 630707 36275482 ~ 36275943 (+)
G1690092 NA other upstream 641669 36264660 ~ 36264981 (+)
G1689732 LOC106612293 other upstream 781260 36120616 ~ 36125390 (+)
G1691142 NA other downstream 632350 37541920 ~ 37543265 (+)
G1691189 NA other downstream 741056 37650626 ~ 37654064 (+)
G1691267 NA other downstream 894973 37804543 ~ 37809061 (+)
G1691990 aatk other downstream 1312935 38222505 ~ 38222735 (+)
G1691992 NA other downstream 1318445 38228015 ~ 38228551 (+)

Expression


Co-expression Network