LOC110499440


Basic Information

Item Value
gene id LOC110499440
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36914324 ~ 36916187 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469960.2
gtcccaatgaagagcagtggttctctgtcctggtcctggggtttcaaagggATACTGTACCTTGCAACTGGAGATTCTTTCAAAACGATTGCCTACAGTTACCGTGTTGGGTGAATTGTCGTGAGCGTGACCAGGGCCATCTGGGATTTCCTCGTGGGGGAATTCAGGCACGTGTGAAGGCTACCTGTGTCCTGCATAACTTCATGAGGACGGACACAAGGACCAGGAGGGGCCCTGCAGCCCCCCCGCCGTGTGCCAGAGGAGAGGTCTGCTGCTCTGCAGGATGTTGCACGGATGGGGGCCAACAACGCAGCAGGGGAGGAAATCCAGACACTAGgtatgttttgatgtgagagaggatgccaaccCCCAGTCCCGTCATCGCCCACCTCACCCACTCGAAGATAaccggggtggcaggtagcctagtggttagagcattgggccataactgaaaggttgcttgatcgaatcctgagctgacaaggtaaaaatcggttgttctggccctgaacaaggcagttaacccactgttcctaggccgtcattgtaaataagaatttgaactgacttgcctagttaaataacatttaaaaatatatatataaaaaaaatgttgggcCAACTGGGGACCCAAGGTTGATTAGGAGATTGTGATGACCTGAGAGAATATGAAGTTtagtagcactgtaattcatatGCTGTCTTCACTGCTCCTCTGTTCtgacctctttccctttctgtctttgaCATTATctcacggcaggtagcctagtggttagtgttggaccagttaccagcaggtagcctagtggttagagtgttgagccagtaaccagcaggtagcct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469960.2 True 849 mRNA 0.50 3 36914324 36916187

Neighbor

gene id symbol gene type direction distance location
LOC118942068 NA coding upstream 4754 36906650 ~ 36909570 (+)
LOC118942468 NA coding upstream 10379 36903830 ~ 36903945 (+)
LOC110499437 nogg3 coding upstream 65253 36847303 ~ 36849071 (+)
LOC110499541 ankfn1 coding upstream 104865 36695775 ~ 36809459 (+)
LOC118942015 LOC106589862 coding upstream 330234 36578726 ~ 36592198 (+)
LOC118942467 NA coding downstream 2349 36918536 ~ 36918651 (+)
LOC110499442 LOC106589867 coding downstream 48990 36965177 ~ 36985560 (+)
LOC110499446 LOC106589902 coding downstream 1159786 38075973 ~ 38081270 (+)
LOC110499447 LOC106589900 coding downstream 1167708 38083895 ~ 38203970 (+)
LOC110499600 NA coding downstream 1664548 38580735 ~ 38594305 (+)
G1690757 NA non-coding upstream 29326 36883996 ~ 36884998 (+)
G1690747 NA non-coding upstream 53898 36858779 ~ 36860426 (+)
G1690531 NA non-coding upstream 100741 36811965 ~ 36813583 (+)
G1690615 NA non-coding upstream 117955 36795942 ~ 36796369 (+)
G1690801 NA non-coding downstream 39661 36955848 ~ 36957193 (+)
G1690810 NA non-coding downstream 57506 36973693 ~ 36973911 (+)
G1690804 NA non-coding downstream 70080 36986267 ~ 36986774 (+)
G1690805 NA non-coding downstream 70888 36987075 ~ 36987231 (+)
G1690931 NA non-coding downstream 126049 37042236 ~ 37042577 (+)
G1690753 NA other upstream 33586 36878051 ~ 36880738 (+)
G1690116 NA other upstream 601626 36304939 ~ 36312698 (+)
G1690099 NA other upstream 638381 36275482 ~ 36275943 (+)
G1690092 NA other upstream 649343 36264660 ~ 36264981 (+)
G1689732 LOC106612293 other upstream 788934 36120616 ~ 36125390 (+)
G1691142 NA other downstream 625733 37541920 ~ 37543265 (+)
G1691189 NA other downstream 734439 37650626 ~ 37654064 (+)
G1691267 NA other downstream 888356 37804543 ~ 37809061 (+)
G1691990 aatk other downstream 1306318 38222505 ~ 38222735 (+)
G1691992 NA other downstream 1311828 38228015 ~ 38228551 (+)

Expression


Co-expression Network