LOC110499441 (LOC106589863)


Basic Information

Item Value
gene id LOC110499441
gene name LOC106589863
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36920178 ~ 36935086 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576582.2
GGAGGAGCTGAGAAAAGACAACAGAAGAGAGGGATGCTTAGGAAGGAAGATTGACTCCAGGGTACCAACAAGAAAGCATGGCCTTCCTCAGGACTCTTTGTGTGGTGACCATAACGGTGACATTCCTGTCAAACGGCTCTCATTCACAGCTGAGTGTGTGCGGAACCCCTCCTCTTAACACTAGGATCGTGGGGGGTCAGGATGCTCCTGCAGGGAGTTGGCCATGGCAGGCCAGTCTTCACAGTTCAGGCAGACATTTTTGTGGGGGATCCCTGATCAACAAAGAGTGGGTGCTGACTGCTGCTCACTGCTTCTCCAGTATCAGTGCATCAAATGTGTTGGTCTACGTGGGTCGTCTGAGCCAGCAGGGCTCCAACCCCAACGAGGTGACACGGACAGTCACTCAGATCATCCTCCACCCCAACTACACCAGAAGTACCAGTGACAACGACATGTGTCTGCTGAAGCTCTCCTCCGCTGTGACTTTTACAAACTTTATTCGGCCAGTCTGCCTAGCTGCACCAGGCAGCTCCTTCCATGCTGGGGCTACTAGCTGGGTCACCGGCTGGGGCAGCATCAGCAGTGGAGTGACCCTGCCCTCACCACAGACCCTACAGGAGGTGGATGTGCCAGTAGTGGGGAATAAGCAGTGTAACTGTAACTATGGAGTTGGTTCCATCACCGACAACATGATCTGTGCTGGTCTATCAGCAGGAGGAAAGGATTCCTGTCAGGGGGACTCGGGAGGTCCAATGGTGAGCAAACAGGGTATTCGCTGGATCCAGTCTGGGGTTGTGAGTTTCGGCAACGGGTGTGCCCAGGCAAATCTCCCAGGAGTGTACGCAAGAGTGTCTCAGTACCAGACCTGGATCAACACCCAGATCACCAGTGACCAGCCAGGATACGTCACCTTCTCCTCCAGTGGGACTGATTCTGACCTCAGTGTCTCCTGTAATGGTCTTCCAGCCCCAGCCACCACCACAACTGCCCCCACGACCACCGCTTCCACCACAACTGCCCCTAAAACCACCACTACAACTGCCCCTAAAACCACCACTACAACTGCCCCTAAAACCACCACTACAACTGCCCCTAAAACCACCACTACAACTGCCCCTAAAACCACCACTACAACTGCCCCTAAAACCACTCCTGAACCCGTGGTGTGCGGCAGTGCCTCTTTGAACTCCCTTACTGGTGGGGGCTTGGCCTCGGGGGGATCCTGGCCCTGGATAGCCAGTCTTCAGACAAACGGAACACACGTCTGCGGGGGAACAATGGTGGCAGAGGACTATGTCATGAGCGATGCTGGGTGCTTCTCCAGTCAGTCCGACGCCTCTCAGTGGACCGTGATCATGGGTCGTCTGAAGCAGAACGGCTCCAACCCCAACGAGGTAACCCTTAAAGTCATCAACATCACCATGAGCACCTTGACGGCGAACAACGTGGCAATCCTCAGACTGGCCAGCCAACCCACGTTGTCTGACTACATCCAGCCTATCTGTGTGGACCAGGGAAGCAGCACCTTCAGCATAGGGACTCAgtgctgggtggctggctggggcAAGGACCAGGGTGGAGCCGAACAGAACTTGCAGCAGTCCCAGACCTCTGTGGTGGATTGTGAGAGCTCTGGCTCCTCTGATAACATCTGCACTGCTGCCTTGGACCTTCGACAGggTGAAGTAGGTGGTCCTCTGATGTGTAAGCAGGGTGATGCATGGTACCAAGCTGCTGTGTTGACTGTCGACAGCAGCAACAAGACCAGCTCCAGCAAAACACGATGGAGCCGGAGTCCTCGCTCCTCCAGCATCCAGGTCTTCACCAAAACCGCTCGCTTCCAGAGCTTCCTTCAGACCACTGTGGGCACACTCCCTTTACCTGTCACAGCCAGAACCCCCGTCAATGACACCAACACTGCCAACAACACAACTGTCAGCGCAATTACTGCTGTCGTTACTCCTGCCAGTGGGGCAACTCTGGCCCACTCATCCCTGGTCCTACTcttcttgtctctcctctctctcctactgtctctcGGTCAAGCCTGATGACGCTGAGGAGTCACCTCTATGTAAACCTCTGGCAATAGGGTCTAAATGTGCTCTGTTTGAAGTATGTACCCCTGCACTTAATATATTGCTGCTCTAGAATATTTTGGTGAGTTTAATCTTGGTTAACCCAGATCTAAAATCTTGCATAATTTGGTCAGCTGTGTGATTTAGTTCTGGGTCAATGTGTTTCAAACATTGTAGCTACTGCGGCTCGTTATCCTGTGCATCCCATTCCGTCTCAACAGATGATTTGGTTTATGTGCAGGACTTGTCCACAAACAATACCTGGTCTAACGCTGTCAGCCACAGTCTACTAAAAAAACAAGGTTTATCTCATCTAATTGTTTATTCATTCTGACTGGATTGAAATATGAAACTGCCATTGTAATCAGTTTGAGCTCACAAGTATTCCCTCTTTGTAGTCTATTATCAAATCTATACAGGTCAGTATTTCATGTTATGAGACAGATCAGgaaattatttatttaaattgaatgACTTGATCTACTGTTGCATCTGGAAATGATGAATGAATTGTCtagttcatttttttttattccaaTAAACAGCAGAATTTATATAGACTAGACACCACACAACGTTTGTGTAAATGTTGTAGTCTGGCCAAACGATTGtgtaaaatgtgttttatatCAGTTGTACAACCTGAGTGATTACTATAGGTAATAGATTATATTCAACTTGAAAATGTCATCTTTAATTCCATACTTAgagttacattacagtatatccTTTATATAAACAAAAATCCTAAATCATTTTAACAATagaagt

Function

NR:

description
transmembrane protease serine 9-like

GO: NA

KEGG:

id description
K09628 PRSS27; serine protease 27

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576582.2 True 2849 mRNA 0.49 10 36920178 36935086

Neighbor

gene id symbol gene type direction distance location
LOC110499438 LOC106589865 coding downstream 23196 36891846 ~ 36896982 (-)
LOC110499436 LOC106589862 coding downstream 327414 36583534 ~ 36592764 (-)
LOC110499433 LOC106589859 coding downstream 532506 36344254 ~ 36387672 (-)
LOC110499540 LOC106589857 coding downstream 583726 36258019 ~ 36336452 (-)
LOC110499429 LOC106589855 coding downstream 723728 36181083 ~ 36196450 (-)
LOC118942469 NA coding upstream 11180 36946266 ~ 36946381 (-)
LOC110499443 rbfox3 coding upstream 120867 37055953 ~ 37197149 (-)
LOC110499449 LOC106589899 coding upstream 1281791 38216877 ~ 38320114 (-)
rtst6galnac rtst6galnac coding upstream 1407904 38342990 ~ 38358741 (-)
LOC110499450 LOC106589897 coding upstream 1467733 38402819 ~ 38412446 (-)
G1690738 nogg3 non-coding downstream 71603 36847297 ~ 36848575 (-)
G1690727 NA non-coding downstream 82560 36836972 ~ 36837618 (-)
G1690710 NA non-coding downstream 92486 36827439 ~ 36827692 (-)
G1690695 NA non-coding downstream 106266 36811931 ~ 36813912 (-)
G1690694 NA non-coding downstream 116069 36803821 ~ 36804109 (-)
G1690859 NA non-coding upstream 9435 36944521 ~ 36944875 (-)
G1690877 NA non-coding upstream 41911 36976997 ~ 36977343 (-)
G1690880 LOC106589867 non-coding upstream 47443 36982529 ~ 36982995 (-)
G1690881 NA non-coding upstream 48582 36983668 ~ 36983905 (-)
G1690882 NA non-coding upstream 48964 36984050 ~ 36984278 (-)
G1690696 NA other downstream 110035 36809699 ~ 36810143 (-)
G1690649 NA other downstream 216737 36702546 ~ 36703441 (-)
G1690367 NA other downstream 499578 36418789 ~ 36420600 (-)
LOC110499427 LOC106612293 other downstream 794780 36120507 ~ 36125437 (-)
G1691432 NA other upstream 303741 37238827 ~ 37239310 (-)
G1692288 cnrg other upstream 1547809 38478761 ~ 38485362 (-)
oxld1 LOC106589895 other upstream 1554464 38489508 ~ 38492111 (-)
G1692405 NA other upstream 1632294 38567380 ~ 38568189 (-)
LOC110499457 LOC106589889 other upstream 2068714 38982955 ~ 39006598 (-)

Expression


Co-expression Network