LOC110499457 (LOC106589889)


Basic Information

Item Value
gene id LOC110499457
gene name LOC106589889
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 38982955 ~ 39006598 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956319.1
gagagggagacagagagagggagacagagagcgggagacagagagcgggagacagagagagggagacagagagagggagacagagagagggagacagagagagggagacagagagagggagacagagagagggagacagagagagggagacagagagagggagacagagagcgggagacagagagagggagacagagagaggtcagaggtcagaggtggaGGATGACATGCTAACTAACCCACACTGCTGTATGCTGTCATTGGAATAACAGATTGTTAACACTGTCCTATCTAGCAGGATCAATAAGAGAATAAATTAACTGGCATTAACACAGCTGCAAATTCATCAATTACTCCTGTGGAAAAACAATTAAATTAACTGTAACGAATACATCATCTTCATAATCTAAGACTGTAACATGATAGCTACCAATGATCTCTAGTCAAGACAATGTGTGTATTTAATGGAACGTACATATTTTCATAAACTGACCTGTATTGTTCCCTTGTGTGATCTATCATAGTATTAAAAGAATACAGAAACACACCACATTACCTAGACAGTGTCCAAATCATATTAACATGTAACAATATTAAACCGCTAATATCAATGTGATGTAAATGAAAAACCTCATGATACCTGCTACAGATGTCTTTTTTTGATTTCAAGGCTCATAGGCCTCTCGTCCAAactagtccactacttttgaccaaggctcaTAGGCCTCTCGTCCAAactagtccactacttttgaccaaggctcaTAGGCCTCTCGTCCAAactagtccactacttttgaccaaggctcaTAGGCCTCTCGTCAAAactagtccactacttttgaccaaggctcaTAGGCCTCTCGTCCAAactagtccactacttttgaccaaggctcaTAGGCCTCTCGTCAAAactagtccactacttttgaccaaggctcaTAGGCCTCTCGTCCAAactagtccactacttttgaccaaggctcaTAGGCCTCTCGTCAAAactagtccactacttttgaccaaggctcaTAGGCCTCTCGTCCAAactagtccactacttttgaccaaggctcaTAAGGCTAtcgtcaaaactagtgcactacatttgaccaaggCTCATAGGGCTATCGTCAAAACAAGTGCACTACATGGAGTAGGGTGACATTTAGGACACATCCTGAATATGTCTAACTGACTGAGGAGATGAATCCGACCAGGAGCGTATTTACCAATCGGTCTGGATTGTGTTTTTTTCTTCAGTTGTTGACACAGAAAACCGTTGTTTGCACTGAAATGACAGtaaatatgaaataaatcaaTGAATCATGTCTGTGCCATTGTGCTATGTATTCATTCTGAGAAATGTCCCTTAAAAAACTGAGATGCTGTAGCATGAGACCAGTGTTTATTGCCAGTCCATACTCTGCGTTATAGTGTTGATCTGAACACTATTCAGTTCTGCCACTAGGTGGCAGAGTTGGATCAGTCTGGCCAATCAAAGCTCTGGCCTCTTATCAACTCAAGAGAATAAAAATAATCAATATTTGCCTCTCCATTGTATTGCACTTTGGACTTTGGAATTTGTCCAACCACTTAGATAGACAAACGACCAGCGTCAGACCAGCGTCGTTTGTATACCTCTTGTAGGATAACCATCGTTTCTTATCAGAAAATACATAGGGAATAAATTATGAATTCAAATGCTTGATTGATCCTGTTATATAATCATCTGATAGTATAGAAGTGTTATCCATCCATCAATGATCAACTCATGATCAACTCCAGATGTGCAAATCATGACAGAGACAACAGGAGTACTACTACACCTCTGTGTGTCCAGTCTGAGCTCCACCCATGCTGCTACTTTTACTCTGTCATCTGATACACAAGGAAATAAAAGGGAGGGCCGTGATTGTATGGAGGAGGGCGCGTGGGTGTGTTTGTTTCGGGGCgggtatatgtatgtatgtgtgtttgtttttgtgtgtgtgtgtgttgggtgtgtgtgtgtgtgtggatggtgtgtgtgtgtgtggagttagCTGAAACTATGAGAGATTCAGCTGAGACGCTCACATAGTTGAGGTGTGGCTTGTTAGAGGCTCCAGGAAGGAACTAACTCAGGTTAGCCAGAGGCAGACAGAGTAgaaaagagaacagaacagaacaggagcgGCTGAGGCGAGTTCatctgagagagaaagtgagcgaGAGTGAGTGAGCTATGGCAGACACAGAACTCAAACCAGAGTCAAAACCAGACCAGAAACTCTGCTGCACTATTTGTTCCGGTGCTCTCAATGGTGACAAGTCCTTTACCTGTGGCCACTTAGTCTGTGCCTCCTGCCTGGGCAAGAAAAGCAAGGGCTGCCCCCAGTGTTTACAATGCTCTGGCAAGCCTATACCGGCATCTGTGGAACAGAACGGAACGATGATTGAAATAGTGGCTGAGTCTCCACTGGTGATCAAAAccgaagaaagagagaaaagcgATATACAAACCCAAATTTCAAAGACACCAGACAAGGCAATGATACGGGAAGACCTGAAGGAATCAGAGGACCATAAGAAACCAGACAAGGCAATGATACGGGAAGACCTGAAGGAATCAGAGGACCATAAGAAACCAGACAAGGCAATGATACGGGAAGACCTGAAGGAATCAGAGGACCATAAGAAACCAGACAAGGCAATGATACAGGAAGACCTGAAGGAATCAGAGGACTCTATGAAATCAGAGGATGCAAAGATACAGAAAGACCTGAAGGAATCAGAGgaagagaaaaataaagagagtGATCCTCCACAGCCTGCAGAGGAAGTGAAAGAGGATGTGGGGGTTGGGGAGGGAGACACATTAAGGGAAGAGAAAGCAAAAGGAGAGGTGAAAGTAGAGCCGTTGGGGCCCGATGATGTTGTGTGTGACTCGTGTATGGAGATGAGCCCGTGCCGGGCCCTCAAGTCCTGCCTCACCTGCCTTGTGTCCTACTGCGAGGCCCACCTTAGGCCTCACCTGGAGAACCCCAAGTTCCAGAACCACAGGTTGGTGGATCCGCTGAGGGACATTGAGAGACGGACCTGTGAGACCCACAAGTGGCCCCTGGACCTTTTCTGCTGTGCCGacgctgtgtgtgtctgtcaggacTGTGTGACAGAGGACCACAGGGGACACAACACTGTGCCTGTGATGGAGGCACGCAGAAACATTGAGAGGGAACTACTAGATAAGCAAGCAGAGATGGTGAGGACAATGACAGCAGCAGAGAATGCCATCAACAAACTTCAAGTCAACACGGTCTCTATTGAGAATTCAGTGACGGAGGTTCGTGAGGTGATTGAGAACCAGTTTACGGTGCTCCAGGCTGCGGTGGAGCGGGCCAAGAGAGAGGTGACGGAGAtcctggagggagaggagaagcagGCTCTGAGACAGGCCGATGGGATCAAGGTACACCTGGAGCAGAGGTGCACTGAGCTGAAAAAGACACAGGCGCAGGTGGAGAAGCTCTCCAAGAACAAGAATGACGTGGACTTCTTACAGGAGTACTCCGAGTGGAAGAAGGACTGCTCCGACATCACCCTACCTGGGGTCTACATCGGCCTCATGGACCGGCTCAACTCCTTCAGCAGAGAGATTGTTACCTCCACACAGGAGCTGTGTGAGCTGCTGCTGTCCAACTACATTGAGACACTCAAAGAGACCTGCAAAAATGacatgATGGGGATTAAAACCACAGTCCATGAAATAATCGCAGCCAAACAGAACATGGACGTTCCAGACCCAAAGACGCGGGATGACTTTCTAAAGTATGCCAATCCTGTGAGTTTTGACGCAGACACGGCCCATAAATTCCTGCGTCTGACTGAGGAAAACAGAAAGGTGACCAACACCACACCCTGGCAACACCCGTACCTCGACGTCCCTGAACGTTTTGAGAGCTGGCGACAGGTACTGGCCACAGAGAGCTTCTATGTCGGCCGACACTACTTTGAGGTGGATGTGAGCGGCGAGGGCACGTACGTCGGACTCACCTACAAGAGCATCGACCGCAAGGGTCCTGAAAGTAACAGCTGCATCACCGGCAATGACTTCTCATGGTGCCTCCAATGGAACGGGCGTAGCTTCTCTGCCTGGCACGGTGATGTGGAGACGCCTCTAAGCGTGGACAAGTTCACACGCATTGGGGTCTATGTGGACTATAGCCGTGGATTACTGGCTTTCTACGGGGTGGATGACGTCGTCGGCATGACCCTCATCCACAAATACAAGGCTGAGTTTCTGGAGCCCCTCTACCCAGCCTTCTGGCTGTCGAAGAAGGAGAACGTGGTAGTGCTTGTTGAACCTGGAGAGCCGCTAACACTGAAAAGCCCCTCTCCCCCTAAAATACCCCTTAACACTGACGTAGCACCACGAAACCGTTTCACAGTAACTCTTGTTGTTGAACAATGATCAATTCGTCGGTAGTAGTAATTTTCTCCGTCGAGCCTGAAAAAGATTCAGAATGCAGGAAGCAATGGAAAAAGAAACCAAAATCCTTATCAGGTGACAAGAAACCTCACGAGATCTGTACATTATGTTCTAAATGAAAGTTGAATATTTATAATATATTTGTTCCTGTTCTTGTTGTGTTACGTGACTAGTCTTGGTATAACGTCAAGTGGTTAGGTTACATCTAATGTGATGCGTCCCTTTCTATTCATATCGTGTGTTTAAATCTGACGCAGAACAGTTTTGATACTGTGACTATTTGAATGGGGGACTTCTTTGGGaaatgttgggactgctgttactgtttactACAAGCTGTGACTTTGGAATGTACTGTATTTGAGAGATACCAcagtaaattaaattaaattgtatttgtcaactGCT
>XM_036956320.1
gagagggagacagagagagggagacagagagcgggagacagagagcgggagacagagagagggagacagagagagggagacagagagagggagacagagagagggagacagagagagggagacagagagagggagacagagagagggagacagagagagggagacagagagcgggagacagagagagggagacagagagaggtcagaggtcagaggtggaGGATGACATGCTAACTAACCCACACTGCTGTATGCTGTCATTGGAATAACAGATTGTTAACACTGTCCTATCTAGCAGGATCAATAAGAGAATAAATTAACTGGCATTAACACAGCTGCAAATTCATCAATTACTCCTGTGGAAAAACAATTAAATTAACTGTAACGAATACATCATCTTCATAATCTAAGACTGTAACATGATAGCTACCAATGATCTCTAGTCAAGACAATGTGTGTATTTAATGGAACGTACATATTTTCATAAACTGACCTGTATTGTTCCCTTGTGTGATCTATCATAGTATTAAAAGAATACAGAAACACACCACATTACCTAGACAGTGTCCAAATCATATTAACATGTAACAATATTAAACCGCTAATATCAATGTGATGTAAATGAAAAACCTCATGATACCTGCTACAGATGTCTTTTTTTGATTTCAAGGCTCATAGGCCTCTCGTCCAAactagtccactacttttgaccaaggctcaTAGGCCTCTCGTCCAAactagtccactacttttgaccaaggctcaTAGGCCTCTCGTCCAAactagtccactacttttgaccaaggctcaTAGGCCTCTCGTCAAAactagtccactacttttgaccaaggctcaTAGGCCTCTCGTCCAAactagtccactacttttgaccaaggctcaTAGGCCTCTCGTCAAAactagtccactacttttgaccaaggctcaTAGGCCTCTCGTCCAAactagtccactacttttgaccaaggctcaTAGGCCTCTCGTCAAAactagtccactacttttgaccaaggctcaTAGGCCTCTCGTCCAAactagtccactacttttgaccaaggctcaTAAGGCTAtcgtcaaaactagtgcactacatttgaccaaggCTCATAGGGCTATCGTCAAAACAAGTGCACTACATGGAGTAGGGTGACATTTAGGACACATCCTGAATATGTCTAACTGACTGAGGAGATGAATCCGACCAGGAGCGTATTTACCAATCGGTCTGGATTGTGTTTTTTTCTTCAGTTGTTGACACAGAAAACCGTTGTTTGCACTGAAATGACAGtaaatatgaaataaatcaaTGAATCATGTCTGTGCCATTGTGCTATGTATTCATTCTGAGAAATGTCCCTTAAAAAACTGAGATGCTGTAGCATGAGACCAGTGTTTATTGCCAGTCCATACTCTGCGTTATAGTGTTGATCTGAACACTATTCAGTTCTGCCACTAGGTGGCAGAGTTGGATCAGTCTGGCCAATCAAAGCTCTGGCCTCTTATCAACTCAAGAGAATAAAAATAATCAATATTTGCCTCTCCATTGTATTGCACTTTGGACTTTGGAATTTGTCCAACCACTTAGATAGACAAACGACCAGCGTCAGACCAGCGTCGTTTGTATACCTCTTGTAGGATAACCATCGTTTCTTATCAGAAAATACATAGGGAATAAATTATGAATTCAAATGCTTGATTGATCCTGTTATATAATCATCTGATAGTATAGAAGTGTTATCCATCCATCAATGATCAACTCATGATCAACTCCAGATGTGCAAATCATGACAGAGACAACAGGAGTACTACTACACCTCTGTGTGTCCAGTCTGAGCTCCACCCATGCTGCTACTTTTACTCTGTCATCTGATACACAAGGAAATAAAAGGGAGGGCCGTGATTGTATGGAGGAGGGCGCGTGGGTGTGTTTGTTTCGGGGCgggtatatgtatgtatgtgtgtttgtttttgtgtgtgtgtgtgttgggtgtgtgtgtgtgtgtggatggtgtgtgtgtgtgtggagttagCTGAAACTATGAGAGATTCAGCTGAGACGCTCACATAGTTGAGGTGTGGCTTGTTAGAGGCTCCAGGAAGGAACTAACTCAGGTTAGCCAGAGGCAGACAGAGTAgaaaagagaacagaacagaacaggagcgGCTGAGGCGAGTTCatctgagagagaaagtgagcgaGAGTGAGTGAGCTATGGCAGACACAGAACTCAAACCAGAGTCAAAACCAGACCAGAAACTCTGCTGCACTATTTGTTCCGGTGCTCTCAATGGTGACAAGTCCTTTACCTGTGGCCACTTAGTCTGTGCCTCCTGCCTGGGCAAGAAAAGCAAGGGCTGCCCCCAGTGTTTACAATGCTCTGGCAAGCCTATACCGGCATCTGTGGAACAGAACGGAACGATGATTGAAATAGTGGCTGAGTCTCCACTGGTGATCAAAAccgaagaaagagagaaaagcgATATACAAACCCAAATTTCAAAGACACCAGACAAGGCAATGATACGGGAAGACCTGAAGGAATCAGAGGACCATAAGAAACCAGACAAGGCAATGATACGGGAAGACCTGAAGGAATCAGAGGACCATAAGAAACCAGACAAGGCAATGATACAGGAAGACCTGAAGGAATCAGAGGACTCTATGAAATCAGAGGATGCAAAGATACAGAAAGACCTGAAGGAATCAGAGgaagagaaaaataaagagagtGATCCTCCACAGCCTGCAGAGGAAGTGAAAGAGGATGTGGGGGTTGGGGAGGGAGACACATTAAGGGAAGAGAAAGCAAAAGGAGAGGTGAAAGTAGAGCCGTTGGGGCCCGATGATGTTGTGTGTGACTCGTGTATGGAGATGAGCCCGTGCCGGGCCCTCAAGTCCTGCCTCACCTGCCTTGTGTCCTACTGCGAGGCCCACCTTAGGCCTCACCTGGAGAACCCCAAGTTCCAGAACCACAGGTTGGTGGATCCGCTGAGGGACATTGAGAGACGGACCTGTGAGACCCACAAGTGGCCCCTGGACCTTTTCTGCTGTGCCGacgctgtgtgtgtctgtcaggacTGTGTGACAGAGGACCACAGGGGACACAACACTGTGCCTGTGATGGAGGCACGCAGAAACATTGAGAGGGAACTACTAGATAAGCAAGCAGAGATGGTGAGGACAATGACAGCAGCAGAGAATGCCATCAACAAACTTCAAGTCAACACGGTCTCTATTGAGAATTCAGTGACGGAGGTTCGTGAGGTGATTGAGAACCAGTTTACGGTGCTCCAGGCTGCGGTGGAGCGGGCCAAGAGAGAGGTGACGGAGAtcctggagggagaggagaagcagGCTCTGAGACAGGCCGATGGGATCAAGGTACACCTGGAGCAGAGGTGCACTGAGCTGAAAAAGACACAGGCGCAGGTGGAGAAGCTCTCCAAGAACAAGAATGACGTGGACTTCTTACAGGAGTACTCCGAGTGGAAGAAGGACTGCTCCGACATCACCCTACCTGGGGTCTACATCGGCCTCATGGACCGGCTCAACTCCTTCAGCAGAGAGATTGTTACCTCCACACAGGAGCTGTGTGAGCTGCTGCTGTCCAACTACATTGAGACACTCAAAGAGACCTGCAAAAATGacatgATGGGGATTAAAACCACAGTCCATGAAATAATCGCAGCCAAACAGAACATGGACGTTCCAGACCCAAAGACGCGGGATGACTTTCTAAAGTATGCCAATCCTGTGAGTTTTGACGCAGACACGGCCCATAAATTCCTGCGTCTGACTGAGGAAAACAGAAAGGTGACCAACACCACACCCTGGCAACACCCGTACCTCGACGTCCCTGAACGTTTTGAGAGCTGGCGACAGGTACTGGCCACAGAGAGCTTCTATGTCGGCCGACACTACTTTGAGGTGGATGTGAGCGGCGAGGGCACGTACGTCGGACTCACCTACAAGAGCATCGACCGCAAGGGTCCTGAAAGTAACAGCTGCATCACCGGCAATGACTTCTCATGGTGCCTCCAATGGAACGGGCGTAGCTTCTCTGCCTGGCACGGTGATGTGGAGACGCCTCTAAGCGTGGACAAGTTCACACGCATTGGGGTCTATGTGGACTATAGCCGTGGATTACTGGCTTTCTACGGGGTGGATGACGTCGTCGGCATGACCCTCATCCACAAATACAAGGCTGAGTTTCTGGAGCCCCTCTACCCAGCCTTCTGGCTGTCGAAGAAGGAGAACGTGGTAGTGCTTGTTGAACCTGGAGAGCCGCTAACACTGAAAAGCCCCTCTCCCCCTAAAATACCCCTTAACACTGACGTAGCACCACGAAACCGTTTCACAGTAACTCTTGTTGTTGAACAATGATCAATTCGTCGGTAGTAGTAATTTTCTCCGTCGAGCCTGAAAAAGATTCAGAATGCAGGAAGCAATGGAAAAAGAAACCAAAATCCTTATCAGGTGACAAGAAACCTCACGAGATCTGTACATTATGTTCTAAATGAAAGTTGAATATTTATAATATATTTGTTCCTGTTCTTGTTGTGTTACGTGACTAGTCTTGGTATAACGTCAAGTGGTTAGGTTACATCTAATGTGATGCGTCCCTTTCTATTCATATCGTGTGTTTAAATCTGACGCAGAACAGTTTTGATACTGTGACTATTTGAATGGGGGACTTCTTTGGGaaatgttgggactgctgttactgtttactACAAGCTGTGACTTTGGAATGTACTGTATTTGAGAGATACCAcagtaaattaaattaaattgtatttgtcaactGCT
>TU1936328
gagaacagaacagaacaggagcgGCTGAGGCGAGTTCatctgagagagaaagtgagcgaGAGTGAGTGAGCTATGGCAGACACAGAACTCAAACCAGAGTCAAAACCAGACCAGAAACTCTGCTGCACTATTTGTTCCGGTGCTCTCAATGGTGACAAGTCCTTTACCTGTGGCCACTTAGTCTGTGCCTCCTGCCTGGGCAAGAAAAGCAAGGGCTGCCCCCAGTGTTTACAATGCTCTGGCAAGCCTATACCGGCATCTGTGGAACAGAACGGAACGATGATTGAAATAGTGGCTGAGTCTCCACTGGTGATCAAAAccgaagaaagagagaaaagcgATATACAAACCCAAATTTCAAAGACACCAGACAAGGCAATGATACGGGAAGACCTGAAGGAATCAGAGGACCATAAGAAACCAGACAAGGCAATGATACGGGAAGACCTGAAGGAATCAGAGGACCATAAGAAACCAGACAAGGCAATGATACGGGAAGACCTGAAGGAATCAGAGGACTCTATGAAATCAGAGGATGCAAAGATACAGAAAGACCTGAAGGAATCAGAGgaagagaaaaataaaga

Function

NR:

description
tripartite motif-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956319.1 False 4882 mRNA 0.46 7 38982955 39006598
XM_036956320.1 False 4828 mRNA 0.46 8 38982955 39006598
TU1936328 True 587 TUCP 0.47 2 39003800 39004440

Neighbor

gene id symbol gene type direction distance location
tvp23b LOC106589890 coding downstream 10904 38965588 ~ 38972051 (-)
LOC110499456 LOC106589891 coding downstream 181911 38782027 ~ 38801044 (-)
kcnj2a LOC106589892 coding downstream 220354 38753757 ~ 38762601 (-)
LOC110499599 NA coding downstream 437452 38537839 ~ 38545503 (-)
LOC110499451 LOC106589894 coding downstream 454981 38515602 ~ 38527974 (-)
LOC110499458 LOC106589887 coding upstream 188 39006786 ~ 39026027 (-)
LOC110499462 LOC106589873 coding upstream 25418 39032016 ~ 39055082 (-)
LOC110499545 hid1 coding upstream 63445 39070043 ~ 39101170 (-)
LOC118942070 NA coding upstream 562763 39569361 ~ 39570042 (-)
LOC110499601 NA coding upstream 624228 39630826 ~ 39658354 (-)
G1692951 NA non-coding downstream 14279 38967418 ~ 38968676 (-)
G1692950 NA non-coding downstream 21246 38961450 ~ 38961709 (-)
G1692949 NA non-coding downstream 21605 38961108 ~ 38961350 (-)
G1692937 NA non-coding downstream 46142 38936467 ~ 38936813 (-)
G1692934 NA non-coding downstream 51853 38930881 ~ 38931102 (-)
G1692967 NA non-coding upstream 4380 39010978 ~ 39011648 (-)
G1692969 NA non-coding upstream 6850 39013448 ~ 39013987 (-)
G1692977 NA non-coding upstream 61586 39068184 ~ 39069100 (-)
G1693013 NA non-coding upstream 101446 39108044 ~ 39111247 (-)
G1693021 NA non-coding upstream 110685 39117283 ~ 39117780 (-)
G1692405 NA other downstream 414766 38567380 ~ 38568189 (-)
oxld1 LOC106589895 other downstream 490915 38489508 ~ 38492111 (-)
G1692288 cnrg other downstream 497593 38478761 ~ 38485362 (-)
G1691432 NA other downstream 1743645 37238827 ~ 37239310 (-)
LOC110499438 LOC106589865 other downstream 2086749 36891846 ~ 36896982 (-)
G1693092 NA other upstream 257703 39264301 ~ 39264691 (-)
G1693393 NA other upstream 456832 39463430 ~ 39490078 (-)
G1693485 LOC106589879 other upstream 606759 39613357 ~ 39614826 (-)
LOC110499466 LOC106589878 other upstream 658666 39664970 ~ 39668357 (-)
G1692957 NA non-coding downstream 18152 38985103 ~ 38985648 (-)

Expression


Co-expression Network