LOC110499468 (vdac2)


Basic Information

Item Value
gene id LOC110499468
gene name vdac2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 39683595 ~ 39687922 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576606.2
ACCTATATTTATAGGGTCCTGCGATCCTGGGGTCATGAGAGGTTGTTTTGCTTTCGCTGTTTCTCCTTCATCGCCCTCCAGCTGGATAGGACTGTCGCGACTCGGTGTTAGAAACTGCTTGAAAACAACGAACCAACGCAAAAAAATCCAGTAGAATGGCTGTTCCTCCATCATATGGTGACCTTGGTAAATCTGCAAAGGACATCTTCAACAAAGGATACGGCTTTGGATTGGTGAAACTTGATGTCAAGACTAAGTCTTCAAGCGGAGTGGAATTCAAAACCTCTGGCTCATCCAACACTGACACCAGCAAAGTCAATGGCAACCTGGAGACCAAGTACAAATGGGCTGAATACGGCCTGACGTTTACAGAGAAGTGGACCACCGACAACACTCTGGGGACTGAGATCACAGTTGAAGACCAGaTCACCAAAGGGCTGAAACTTACGTTTGACACCCAATTCTCACCAAATTCTGGCAAGAAGAGCGGTAAGGTGAAGACTGCGTATAAGCGTGAATACGTCAACTTGGGCGTGGATGTGGACTTTGACTTTGCCGGCCCGGCCATCCATGGGGCGGCGGTGGCCGGATACGagggatggctggctggctaccAGATGACCTTCGACACGGCCAAGTCCAAAATGACCCAGAGCAACTTTGCTGTTGGCTACAAAACGGGAGATTTCCAGCTGCACACCAATGTTAATGATGGCACAGAGTTTGGAGGGTCCATTTACCAGAAGGTGAATGACAAGCTGGAGACTGCTGTGAACCTGGCCTGGACAGCAGGCAGCAACAGCACGCGCTTTGGCATCGCTGCCAAGTATCAGCTGGACTCCAGTGCCTCCATATCTGCTAAAGTTAACAATGCCAGCTTGGTGGGAGTGGGCTATACCCAGACGCTGCGACCAGGTATGAAACTTGTCCTGTCTGCACTGGTGGATGGCAAGAGCATCAACGCCGGTGGCCACAAGCTGGGACTGGGCCTGGAGCTGGAGGCATAAGTATCTAGCTATCCTTTCTAGTGAAGTCTTCATGTTTTAATATTTGAGGGAATATTAGAAGAATTTGGCCTTATTTATTTCCAACCCAACAACCAGTAAGGGATGTCTCCAAAGGAAAGCGATGAATCTAATCtaaaacatcaacaacatagcccTCAGTTCTGTCAGTTAGATGGAACCCTGACCTATCAGCCACTGTCATTTCCTTTCAGTTGGTTTGTAGTCAGTCATCCTGTGTGTCCTATAAACAGTAGCCCAGTACTACTAAGCCTGTGATGTATTGGTTTGTAGTCAGTCATCCTGTGTGTCCTATAAACAGTAGCCCAGTACTACTAAGCCTGTGATGTATTGGTTTGTAGTCAGTCATCCTGTGTGTCCTATGAACAGTAGCCCAGTACTACTAAGCCTGTTATGTATTGGTTTGTAGTCAGTCATCCTGTGTGTCCTATGAACAGTAGCCCAGTACTACTAAGCCTGTTATGTATTCCTGTACCACTAGTGAAATACATCCTCCTTCTCAAAGATCGTGTTTATTCTGTATGTTTTACATTTGTTTCATTGGTTTGGCCCGGACAATCCAAGGAGGGTTATATTAAGATGTATACTTTGATTTAATTCTATATATAATAACAATGTTATTATGTGACAATCCTGAACTGTTGTTTTGCACACTAGAAAATTATATTATACCTTAATTTATATCCTTTCTTTCCCTGTTTCATTTGCACATAGAGTAGCCTTCGGTTAGCGACGCTTTGCCTGTTGTCAGGACGGCTCCTACTCAGAATGTTCATCGCGTATTCTAGAGACCTTAAACCTCTCTTCTATTGGGTGTTGATCTATTTAGCTAATATTCTTGAGGACGTATTAATTATGCTTACTGCTTCGCCACTCATTCTGCGGTCTTTCTGCAGGCTCATATGATCTTGACCTGTTTCCTAGTTGAACATGGTAATATAAATTGCAAGACATTTGCCAAATGGGATTTTCTGGGTGTCATTAGAAAGGAAAAAGGGAAAGTATTATAACTGAGtgactcctccccttcccctaGCTGTGTATAAATGATATGACTGGGAAACCAAGTCCACTTGTCTGTCTACCTTTACAATAAAGTCTTTAAACAAGTCA

Function

symbol description
vdac2 Enables channel activity and identical protein binding activity. Acts upstream of or within calcium import into the mitochondrion; fin regeneration; and regulation of heart contraction. Located in plasma membrane. Is expressed in several structures, including lens; pectoral fin; pericardial region; solid lens vesicle; and ventral mesoderm. Orthologous to human VDAC2 (voltage dependent anion channel 2).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0044070 regulation of anion transport biological_process
GO:0005741 mitochondrial outer membrane cellular_component
GO:0008308 voltage-gated anion channel activity molecular_function

KEGG:

id description
K15040 VDAC2; voltage-dependent anion channel protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576606.2 True 2138 mRNA 0.45 9 39683595 39687922

Neighbor

gene id symbol gene type direction distance location
LOC110499467 LOC106589877 coding upstream 5157 39671050 ~ 39678438 (+)
LOC110499546 LOC106589879 coding upstream 65215 39516539 ~ 39618380 (+)
LOC118942017 NA coding upstream 264644 39416869 ~ 39418951 (+)
LOC110499465 LOC106589883 coding upstream 487395 39124078 ~ 39196200 (+)
LOC118942069 NA coding upstream 533193 39143956 ~ 39150402 (+)
mgme1 mgme1 coding downstream 751999 40439921 ~ 40443984 (+)
ephx5 LOC105009996 coding downstream 766872 40454794 ~ 40467136 (+)
LOC110499485 NA coding downstream 800034 40487956 ~ 40490785 (+)
LOC118942071 NA coding downstream 811035 40498957 ~ 40502399 (+)
LOC110499549 LOC106589914 coding downstream 838071 40525993 ~ 40587582 (+)
G1693321 LOC106589878 non-coding upstream 15282 39665252 ~ 39668313 (+)
G1693316 NA non-coding upstream 25403 39656836 ~ 39658192 (+)
G1693313 NA non-coding upstream 27027 39638075 ~ 39656568 (+)
G1693312 NA non-coding upstream 41986 39637881 ~ 39641609 (+)
G1693289 NA non-coding upstream 104565 39576326 ~ 39579030 (+)
G1693340 NA non-coding downstream 40724 39728646 ~ 39746677 (+)
G1693575 NA non-coding downstream 84068 39771990 ~ 39772253 (+)
G1693582 NA non-coding downstream 89852 39777774 ~ 39778014 (+)
G1693584 NA non-coding downstream 90212 39778134 ~ 39778385 (+)
G1693695 NA non-coding downstream 190906 39878828 ~ 39879186 (+)
G1693184 NA other upstream 323960 39356345 ~ 39359635 (+)
G1692702 NA other upstream 843324 38839934 ~ 38840271 (+)
G1692568 NA other upstream 971304 38710951 ~ 38712291 (+)
G1692406 NA other upstream 1114149 38568269 ~ 38569446 (+)
G1691992 NA other upstream 1455044 38228015 ~ 38228551 (+)
G1693699 NA other downstream 193427 39881349 ~ 39881843 (+)
G1693700 NA other downstream 194036 39881958 ~ 39882625 (+)
G1693914 NA other downstream 523600 40211522 ~ 40212953 (+)
G1695272 NA other downstream 1930105 41618027 ~ 41618505 (+)
LOC110499605 LOC106590859 other downstream 2821709 42484544 ~ 42511247 (+)

Expression


Co-expression Network