LOC110499559 (LOC106589928)


Basic Information

Item Value
gene id LOC110499559
gene name LOC106589928
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 42392385 ~ 42400906 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956363.1
GCCTTTATAAGGAGTTCAGTCAAAACTCTGGCACTTTCAGACGCGAGAATAAACGTTGAGGAACTATCTGTAGTGTCCGACAATAATAGTGGCCATCAAAAATGGCAGCATACTCATTACCGGAGGGATTCTCCGATTTTGACATGTTTGCATTCGGTTCAGCTCTTCTTGTTGGGGGTCTTGTCGGATTCTTCCTCAACGCCGTTTCAATATTGGCCTATATTAGCGTAAAGCAAATGCGAACTCCCAGTAACTTCCTTGTCTTTAACCTCGCCGTGGCTGACATTATGCTCAATACAACCGGCCTGATCGCTGCATACGCCAGCTTATCGTACAGACACTGGCCCTGGGGTCAAGACGGATGTAGCAACCACGCCGTCATAGGGATGACAGCAGTTCTGGCCTCCATCAGTTTCCTGGCTACCATCGCCTGGGACAGATATCACCAATATGTCACCAATCAGAAGCTGTTTTGGAGCACGGCCTGGACTTTTTCTATCATTATCTGGGGGTTGGCCATCTTCTGGGCGGCCGTCCCTCTGACTGGATGGGGAGTGTATGACTTTGAGCCAATGAGGACGTGCTGCACTCTAGACTACACCAAAGGAGACAAGGACTACATGACCTATATGGGAGCCCTGACGGTCTTCTACCTTATCTTCCCTGCTTATGTCATGAAGTCCAACTACGACGCCATTTACGCATACTTCAAGAAGATCCACAAGCACAGGTGGAACACCAGCGTACCACTGAGGGTTCTGTTGTTCTGCTGGGGACCCTACGAAGTCATGTGTATCTACGCCTGCTTTGGCAATGCCAAACTGGTCTCTCCAAAGCTGAGAATGTTGCTTCCTGTTTTGGCGAAAATGAACCCTATTTTCAATGCTTGGCTCTATTCCTTTGGGAACGAGTTCTACAGAGGAGGGGTGTGGCAGTTCCTGACTGGCCAGAAGTTTACAGAGCCCGTCGTTGTGAAGTTAAAAGGAAGATAAAGGAAGTTCTTGTTAGTTACAGTCATATATATAGAACGGTCAGAGTTTCTATTCCCATTCTACTCATTCGAATTCTATGGTTACAGTACCATACATATAATTAGAATGTTCCATGTTCCATTCtactcattctaattctatggttaCAGTACCGTACATATAATTAGAATGTTCCATGTTCCATTCtactcattctaattctatggttaCAGTACCATACATAGAATTAGAATGTTCCAATCCATTCAaccattctaattctatggttaCAGTACCGTACATAGAATTAGAATGTTCCATGTTCCATTCtactcattctaattctatggttaCAGTACCATACATATAATTAGAATGTTCCATGTTCCATTCAACCATTCGAATACTATGCTAAAGACCATATTCAAACAACAAATCATCATCATACACTCTCATTGCAGTAGGTTTCACATTGGAAGAATGCTATCTGTACAAGGTTGTAAAGTAAATCTCAATTGTTTATTTAGTTGGTTTGGGATACCATATGCCAATGTAGCTTGTCAATAGAGATATGGTGATTGTCCATTCAAATAGACTTTGGGGAGAGGCACCTGTTCTTAGGTTGAATGATGTATCATGATTTACTAGAGATGATTGACTAGACACTCATTGACCTATGTTTTAGTAGAAATTCCACAGTGCTCTTAAAATGACATGTTCATGTTGAGTGATTTTTTGAAGGAAGTAAAAACCAGTGTAATCAACTTAAAGTGGATGAGACTGAATTTTAGTGGAATCATgataatgtaaaacatattttatatccAATAGCTTTACTTCTAGAACTTTCCCTGATGTCTTCCTCTGATCACTGTCAATAAACGCAGCGAGGTGTGCTGCCATGTGCTGCTCTTCAATATGACTCAACTGTCCATGGAAATGGTGGGATGCTCAACACGCTTTACTGTACAGCTGTAAATGATGAGTGACTTAGTCTTCAGACTTCAAAAGAGCTATAGCTGCCAGACCTGAGTTCAAATATCAGACTACAAAAAGAGCTATAcctaccagacctgggttcaaatatcaGACTACAAAAAGAGCTATACCTacaagacctgggttcaaatatcaGACTACAAAAGAGCTATAcctaccagacctgggttcaaatatcaGACTACAAAAGAGCTATAcctaccagacctgggttcaaatatcaGACTACAAAAGAGCTATAcctaccagacctgggttcaaatatcaGACTACAAAAGAGCTATAcctaccagacctgggttcaaatatcaGACTACAAAAGAGCTATAcctaccagacctgggttcaaatatcaGACTACAAAAGAGCTATAcctaccagacctgggttcaaatatcaGACTACAAAAGAGCTATAGctgccagacctgggttcaaatatcaGACTACAAAAGAGCTATAcctaccagacctgggttcaaatatcaGACTACAAAAGAGCTATAcctaccagacctgggttcaaatatcaGACAACAAAAGAGCTATAcctaccagacctgggttcaaatatcaGACTACAAAAGAGCTATAGCTGCCAGACCtgagttcaaatactatttaaaatcTTTAAAGTACCTTAAGCGTTTACTTTAGCCTGCCCGGAGTGCCAGATGAGTGAGGATTACTTTTATGCTACTATTTCATTGTttccattgtgccaggcaagctcaatcaagcccggCTAATTAGTATTTGACATGAAATATTATTTGAAGCCAGTTCTGATTTATTAAGCAAGCCATTTCATGCTATGGTGGTGGTTGTCTAGTTGGGTCTCCTGGACCCTGTGGGGTTTTATGGTTGTGTCTCGAATGGCATcttattccctatgggccctagccaaaagtagtgcactatataggaaatatggTTCCATTGGGGACAGCTGAAACCCctgactatacagtgccttcagaaagtattcacaccccgtgactttttccacgttttgttgtgttacagccttgaTTTAAAATAGATGAAATGTAGATTTTTCTTTTGtcgctggcctacacacaataccccattatgtcaaagtggaattatgctttttgaaaatgtttacaaattaataaaaatgaaaatatgaaatgttttgagtcagtAAGTATACAACCCCTTTGtgatggcaagcctaaataagttcaggagtaaaaaaaaaatgtgcttaacaagtcacgcaATTAGTTGTATGGACAATAATAGTGTTTTTGAACGACTACCCTCATCTTTGCAcccccacacatgcaattatctgcctcagtcgagcagtgaatttgaaacaaagattcaaccacaaagaccagggagggtttccaatgcctcgcaaagagaagcacctattggtagatggataaaaaTAGAAAACAAGCAGACATTGGAGCATGGTGAAGTTGTCAATTACACTTTGGAAGGTGTATCAATACAGTGCTTTTGCAAccgtattcatcccccttggcgtttttcctattttgttgcattacaacctataattgaaatgtatttttatttgaatttcatgtaatggacatacacaaaatagatcaaa

Function

NR:

description
PREDICTED: RPE-retinal G protein-coupled receptor-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0006935 chemotaxis biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004950 chemokine receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956363.1 True 3581 mRNA 0.41 7 42392385 42400906

Neighbor

gene id symbol gene type direction distance location
LOC110499491 LOC106589927 coding downstream 22412 42366843 ~ 42369973 (-)
LOC110499558 LOC106589926 coding downstream 26891 42339532 ~ 42365494 (-)
LOC118942018 NA coding downstream 735338 41648488 ~ 41657047 (-)
LOC118942072 NA coding downstream 1867948 40522773 ~ 40524460 (-)
LOC110499548 hyep coding downstream 1894504 40472724 ~ 40497881 (-)
LOC110499560 LOC106589931 coding upstream 39971 42438602 ~ 42475200 (-)
LOC118942020 NA coding upstream 113754 42514660 ~ 42522180 (-)
canb1 LOC106578839 coding upstream 125677 42526583 ~ 42570940 (-)
LOC110499495 LOC106589924 coding upstream 172900 42573806 ~ 42578705 (-)
cisd1 LOC106589936 coding upstream 181427 42582333 ~ 42587039 (-)
G1696099 NA non-coding downstream 38480 42353291 ~ 42353905 (-)
G1696095 NA non-coding downstream 49661 42342436 ~ 42342724 (-)
G1696084 NA non-coding downstream 53202 42338009 ~ 42339183 (-)
G1696082 NA non-coding downstream 72946 42318103 ~ 42319439 (-)
G1696081 NA non-coding downstream 74545 42316953 ~ 42317840 (-)
G1696134 NA non-coding upstream 18538 42419444 ~ 42420351 (-)
G1696136 NA non-coding upstream 30706 42431612 ~ 42431854 (-)
G1696143 NA non-coding upstream 42556 42443462 ~ 42443841 (-)
G1696144 NA non-coding upstream 44455 42445361 ~ 42445618 (-)
G1696001 LOC106589925 other downstream 216231 42175236 ~ 42176154 (-)
G1695918 NA other downstream 388775 42003317 ~ 42003610 (-)
G1695141 NA other downstream 979435 41412382 ~ 41412950 (-)
G1694757 NA other downstream 1336819 41052006 ~ 41055566 (-)
G1694739 NA other downstream 1378391 41013174 ~ 41013994 (-)
LOC110499563 LOC106589940 other upstream 328160 42683879 ~ 42733292 (-)
G1696403 NA other upstream 425689 42826595 ~ 42827235 (-)
G1696606 NA other upstream 481263 42882169 ~ 42882792 (-)
G1696673 NA other upstream 646832 43047738 ~ 43049363 (-)

Expression

LOC110499559(LOC106589928) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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LOC110499559(LOC106589928) Expression in each Bioproject

Bar chart with 19 bars.
LOC110499559(LOC106589928) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
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Co-expression Network