LOC110499605 (LOC106590859)


Basic Information

Item Value
gene id LOC110499605
gene name LOC106590859
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 42484544 ~ 42511247 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956365.1
TGTCAGTCCGTCAGTGTAAATGCGACTGTTTACAGAAATCCTAGAATAAAAACAGTTTCAAAAAGCTTTAAAAAGAAAAGCTAAAATGGACAATTGTGATTTGGAGAAGCTTGCAATTTCGGGACAGACGTTGCAGCCTGCGTTCAAAGCAGATGTAACAACTTATAAAGTTACTGTTGCAAGCGATGTCGACCAGGTTACATTGGACCTGCTCACAAGTGACTGCGGAGCCAGTTATAAAATCcGTTGTGGTGATGGCTCAAAGTCCATCAAACTGAATGATGGATTGAATTTGGTTGAAATAGAGGTGGGAGCCGAGGACGGCACCTCCAAAAAATATTGCATTGAGGTCACCAAACTGTCTGCGAGGACTGCAGAGTTGAGTGACCTTACAATTGAAGGAAATGTTCAATTACAACCTACATTTTCGGCAAACATCTATGATTACTCAAGCACAGTTCCTTTCTACTGTAATTCGGTGACCATACTGCCCAAAGTTCCTGATAAAAACATGAAAGTTTCAGTGAATGAAGAAAGTGATTCCCAACCTTCTCCATTGACTGTTGGAGAAACTGTCGTCAGTATCAAGGTCTTGTCAGCAGATGGCAGCAATTCTCAGATGTACTATGTGTTGGTGATGCGAGAGCAGATTCCCATGGCTGTGTCTTTCAGTGATGTGAAAGAGCAGGTCTCCTATGAGTGCCCTGTCACTCTGACGGCCCTCTACAGACCCATATCCATCAACCAGAGTGATCCACAGCACCTGTTCTCAGCCCCCTACATTGACATGCTGGCGAGAAGGTCGAAGGTCGACCCGCTAAACGAGTGTCCCCTCGGAGACAGCTGGAAGGTTCTGGAACACGACCTGGATAAGACCATGTCTTCTGCGCTGGTCAAGTGCTTCTTTGCATACCGAGGATGTGAGAGTGTGGTGAAACTGGCTGAAGTGGGGTCACATGCACTGGAGTGTCCACACAAACCCTCAACGGACCTGGACCCAAAGGACGTCACTGAGACGAGCTGGTACAAAAAGCATTTTGCATCCTCGACCTGCTTGGAGATAGAAACCAAACACACTTTGGAGGTGCGTAACTGGGAGAAGAGACTACAAAAGGCAATAGGACAGGATAGTGTCGATAATCTGTGTGCCCTGGCCCAGGACAATCTGAAACTCTACAGAGAGCGTCTGCCCAAACCAGGTGACCTGCTGCAGTATGAGAATGGTCAGTCTCCTCTGGACTGTCTGGAGCAGGCTGCAGTCTATTATGCCTCAGCCATCAAGCTGAAGCCCCGAGACCCCAGACTCCACTTCCTCCTGGGGCTGGCCCTGGAGGAGCAACACTATGCAGCAGAGATGTACGGACTGAGGAGGAAATCTGATGGGGACGTTGAGGACCTGAGCAGTGCCAAGTCCACGGCGTGTCAGGATGACATCCTGGCTGTGTGTAAGCTGCATGGCTTCCCTGGCACGCCTACCATGGAGAACCAGCTCCAGGCCCTGGACACAGAGTACCACCAGCTGAAAGAGCAGGGCCAGTCAGGCAAAGCAGACTACATTCAGACCCTGTTCATCTTCCTCTCCAAGAAGGCAGGCAAGGATGGCAGTGCGGGCGTGGGGGACGAAGAGAGCTGTATCCACCGGGCCCTTCTGAAGTACCTGGATGCCTGGTCGCTGAACCAGGACTTCTGGGAGTACAACCTCCACGTGGGGCGTATGCTGCTGTTGCAGAAGAGGAACAAGGAGGCACTGCAGCACCTGCAGACCGGACTGGCCCTGCGGCCCTCACAGCCAGCACTTAGgttCTTCACAGGTCTTGCTCTACTGCTACAGGAGGAAGCCTCAGAGGCTGTGGAGAAGGAGGCAGGCCTGTTTTTACAACAAGGCCTGGAGCATGTTATAGCACAGTCCTGCAACATGGAGAACaactacagTGGTTTGGAGCCGAGCGTGACAGACCCCCTGTCCAGTGTGAGAACACAGTTCCTGCGTGGCTGCCTCACCCTAGGTGCCCTCCAAcagaagaacactctctctcagAAGCCAATGAGCTCTGAGCAGGTCTATCACACTGTTGTGGTGCTGGCAGCCCGCGGTGTGTGTCGGTGCGTGTGTCGGGACGAGGTGGCCCAGCAGCTGGAGTGGGTGTTGCTAGATGCCCACTTTGCCCTCCTCCAGAGCCTTATTCAGCAAAAGAAGGCTGCTGGGTTGAcccagggtcagggtcagggtcagggtcagggtcagggcaagcagggagagacagagagacaggcctgGGTGGCCAAGAGGTGTCAGGCTCTCACAGGTCTGATCCGCCTCACCTCTATCCCCGCCTGCAGGGAGCTGATGGACATGCAGGAGAAGGTCTGCCAGGTTGCCGTGGTGACGACTCCTCGTGACAGCCATGCGCTGTGTCTCCTGGGGCTGGCCCAGCTGGCTCAGTGTGACAACGACCACAGCTCCCAGAGGTTAGAAGGAGCCATTGCCAACGCCTGCCTCAGCTTCCAGGCAAGCATCGAACTGGAGGACAAGCCTCAGAGCGGAGAGCCACCCACACAGCTCACCAaGCAGCAGTGGTGGCAGGACAGGCTGGCAGCAGACAAGGAGAAGGCAGTCAAGGGGACAGCCAGCCAGGGAGCGGGTGGGGGTGGCTCTGGGCCTCCTGACACTGCAGTGGCTGCCGGGAGAGGATGTGGGCGTGGCATGGGAGGTCCTGCTAGAGGGGGTACTGCGGCTGCAGCCAAGACCCCCACGAGAGGAGGCAAGACTGCCCCTCCAGCCAAAAACACCCCTTCTACTGCCCCTCCAGCCAAAAACACCCCCTCTACTGCCCCTTCAGCCAAAAACACCCCCTCTACTGCCTCTCCAGCCAAACACACCCCCTCTACTGCCCCTCCAGCCAAAAACACCCCCTCTACTGCCCCTCCAGCCACCGTCTCTCCATCCAGCAGGGGGCAAGTTGGAGCAGCCAAAACTCCTGGCCCTGCCAAGCCCAGCAGCTCCAAGACCCAGCTCATCTCCCCCAGCAAGTCTAAACCAGACTGCTCCCCAAGCCCAGCCAAACCTGGGCCCACAGAAGAGTCAGCTGTGGCAGAGAGTAGCAACGTTCTCCCCAAAGCTCTGTTGAACCGTCGATCCCATGCCCCTCGCCTCGGCTTGGCCCGCGCCCTCTCCCGCTCCGCAGACAGCCACCACCAGGCACACCAGCTCTACCAGGAGGTCATCACCATGGCACCAGAGGTCCACGATGCGTACATTGAGCTGGCAGAGATGCTGGGGCAGTCCGACCCCCTGGCTGCTGTAGAGGTGTACTGTCGGTTCCCCCTGAAGCCCGTCTCAGAGCAGAACTTTGACGACGCCTTCATCACCGGAGAGATCGTACGCATCCTGATGAAACAAGGCCTCTACGAGCACCCAGAGCTGAGACACAACCTCATCGCCTACGGGAAAGTCATGGGCCTGGGTTGCCTTGAGAAATACATCAACATCCTCGAAGGGAAGTTCATGAGCAGCCTTCTGAAGAGAGTGTATGCTGGGATCCATGACAAATCAGTGGAAGACAAGGATCTGCAGGACTTCTTCAAGTTCAAGTGCTGGATATGAACTTTCCTTTCATAAATAGACTGGCTGTTTATTCCTTGATCAATGTATGAATGTATCTCTTTAGACCAATCGGCTAGTCACATCATCTTTAGACCAATCGGCTAGTCACCAATCGGCTAGTCACATCATCTTTAGACCAATCGGCTAGTCACATCATCTTTAGACCAATTGGCTAGTCACATCATCTTTAGACCAATCGGCTAGTCACCAATCGGCTAGTCACATCATCTTTAGACCAATCGGCTAGTCACATCATCTTTAGACCAATCGGCTAGTCACATCATCTTTAGACCAATCGGCTAGTCACATCATCTTTAGACCAATCGACTAGTCACATCATCTTTAGACCAATCGGCTAGTCACATCATTTTTAGACCAATCGGCTAGTCACATCCTCTTTAGACCAATCGGCTAGTCACATCCTCTTTAGACCAATCGGCTAGTCACATCCTCTTTAGACCAATCGGCTAGTCACATCCTCTTTAGACCAATCGGCTAGTCACATCCTCTTTAGACCAATCGGCTAGTCACATCCTCTTTAGACCAATCGGCTAGTCACATCCTCTTTAGACCAATCGGCTAGTCACCAATCGGCTAGTCACATCATCTTTAGACCAAGCAGCTAGTCACATCATCTTTAGACCAATCGGCTAGTCACCAATCGGCTAGTCACATCATCTTTAGACCAATCGGCTAGTCACATCATCTTTAGACCAATCGGCTAGTCACATCATCTTTAGACCAATCGGCTAGTCACATCATCTTTAGACCAATCGACTAGTCACATCATCTTTAGACCAATAGGCTAGTCACATCATCTTTAGACCAATTGGCTAGTCACATCATCTTTAGACCAATCGACTAGTCACATCATCTTTAGACCAATCGGCTAGTCACATCATTTTTAGACCAATCGGCTAGTCACATCCTCTTTAGACCAATCGGCTAGTCACATCCTCTTTAGACCAATCGGCTAGTCACATCCTCTTTAGACCAATCGGCTAGTCACATCCTCTTTAGACCAATCGGCTAGTCACATCCTCTTTAGACCAATCGGCTAGTCGACAGAGTGAAACATATGTCgttgtacccttgagcaaggcagttaaaccccccCCCACcgccccccgacacacacaccaacagctTCCCAGGCGACCAATCTGGCAGCACCTCTCCGATTCAGACGGGTTGAGAGCAGAAGTCAAGTTTCGGTTGGACCTTGTGTAAGTAAcggtaaaaaaaatgtatggaatcCTTTAAAGAATATGAACTGTTACTATTCCTTGGGTTCTGCCGACACTAGGAAATATCTTTCACTGCACATGAGGTCAACGACCTGTTAAAATACCAAATTCAAAATAAGACAATACTTTGATCGTTTTCTCAAAAAGGCCATTTAAATCTGGACCACTTCATCCCCAGTACTGTTTTATAACAGTCACAGTGAGAACAGCAGTAGACTGTTTTATAACAGTCACAGTGAGAACAGCAGTAGACTGTTATATAACAAAGTcacagtaataacagcagtagactgttttataacacagtcacagtaataacagcagtagactgttttataacacagtcacagtaataacagcagtagactgttttataacacagtcacagtaataacagcagtagaCTGTTATATAACACATTCACAGTGAGAACAGCAGTAGACTGTTATATAACACAGTcacagtaataacagcagtagaCTGTTATATAACACAGTCACAGTGAGAACAGCAGTAGACTGTTATATAACACAGTcacagtaataacagcagtagactgttatataacacagtcacagtaataacagcagtagaCTGTTATATAACAAAGTcacagtaataacagcagtagactgttatataacacagtcacagtaataacagcagtagaCTGTTATATAACACAGTCACAGTGAGAACAGCAGTAGACTGTTTTATAACACAGTcacagtaataacagcagtagactgttttataacacagtcacagtaataacagcagtagactgttatataacacagtcacagtaataacagcagtagaCTGTTTTATAACACAGTCACAGTGAGAACAGCAGTAGACTGTTATATAACACAGTcacagtaataacagcagtagaCTGTTTTATAACAGTCATAGTGAGAACAGCAGTAGACTGTTATATAACACAGTcacagtaataacagcagtagaCTGTTATATAACACAGTCACAGTGAGAACAGAAGTAGACTGTTATATAACACAGTCACAGTGAGAACAGCAGTAGACTGTTATATAACACAGTCACAGTGAGAACAGCAGTAGACTGTTTTATAACACAGTcacagtaataacagcagtagactgttttataacacagtcacagtaataacagcagtagaCTGTTATATAACACAGTCACAGTGAGAACAGCAGTAGACTGTTATATAACAAAGTcacagtaataacagcagtagaCTGTTTTATAACACAGTCACAGTGAGAACAGCAGTAGACTGTTATATAACACAGTcacagtaataacagcagtagactgttttataacacagtcacagtaataacagcagtagaCTGTTATATAACACAGTCACAGTGAGAACAGCAATAGACTGTTATATAACAAAGTcacagtaataacagcagtagactgttatataacacagtcacagtaataacagcagtagactgttatataacacagtcacagtaataacagcagtagaCTGTTATATAACACAGTCACAGTGAGAACAGCAGTAGACTGTTATATAACACAGTcacagtaataacagcagtagactgttttataacacagtcacagtaataacagcagtagaCTGTTTTATAACACAGTCACAGTGAGAACAGCAGTAGACTGTTATATAACACAGTcacagtaataacagcagtagactgttttataacacagtcacagtaataacagcagtagaCTGTTATATAACACAGTCACAGTGAGAACAGCAGTAGACTGTTATATAACAAAGTcacagtaataacagcagtagactgttatataacacagtcgcagtaataacagcagtagaCTGTTATATAACAAAGTcacagtaataacagcagtagactgttttataacacagtcacagtaataacagcagtagactgttttataacacagtcacagtaataacagcagtagactgttatataacacagtcacagtaataacagcagtagaCTGTTTTATAACAGTGAGAACAGTGAGAACAGCAGTAGACTGTTATATAACACAGTCACAGTGAGAACAGCAGTAGACTGTTATATAACACAGTcacagtaataacagcagtagactgttatataacacagtcacagtaataacagcagtagaCTGTTATATAACACAGTCACAGTAATAACAGCAGTTGACTGTTATATAACACAGCCACAGTGAGAACAGAAGAACAGTGAGAATTCTTTTTCATGCCAGGAGAGGTACCGGATTCTGGTAAATGGGTTCCggaacaaaacagtccaaaacTGAGAAGTGCCAGATTCTGTTCCGGAAGGatctggctcaaattaagcactgcgCATAACTCAGACTTTCACATACAGTGAGTGCATCATGCACTGACACCAATtattgtcacgtgtgctccctctctggcctctaggtcaccaggctgctcgttatggcgcacctGCGTGTCCTCAGACTCACCTGGGCTCCATCACTTCCTGATTACCTGCGCTATActgtatatgtcactccctttggttccttccctatatatgtccctccctttggttccttccctatatatgtctctccctttggttccttccctatatat
>TU1939691
gtgtgtgtgtgtgtgtgtgtgtgtgggcaggttCTTCACAGGTCTTGCTCTACTGCTACAGGAGGAAGCCTCAGAGGCTGTGGAGAAGGAGGCAGGCCTGTTTTTACAACAAGGCCTGGAGCATGTTATAGCACAGTCCTGCAACATGGAGAACaactacaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
>TU1939686
ataacagcagtagaCTGTTATATAACACAGTCACAGTGAGAACAGCAGTAGACTGTTATATAACACAGTcacagtaataacagcagtagactgttttataacacagtcacagtaataacagcagtagaCTGTTTTATAACACAGTCACAGTGAGAACAGCAGTAGACTGTTATATAACACAGTcacagtaataacagcagtagactgttttataacacagtcacagtaataacagcagtagaCTGTTATATAACACAGTCACAGTGAGAACAGCAGTAGACTGTTATATAACAAAGTcacagtaataacagcagtagactgttatataacacagtcgcagtaataacagcagtagaCTGTTATATAACAAAGTcacagtaataacagcagtagactgttttataacacagtcacagtaataacagcagtagactgttttataacacagtcacagtaataacagcagtagactgttatataacacagtcacagtaataacagcagtagaCTGTTTTATAACAGTGAGAACAGTGAGAACAGCAGTAGACTGTTATATAACACAGTCACAGTGAGAACAGCAGTAGACTGTTATATAACACAGTcacagtaataacagcagtagactgttatataacacagtcacagtaataacagcagtagaCTGTTATATAACACAGTCACAGTAATAACAGCAGTTGACTGTTATATAACACAGCCACAGTGAGAACAGAAGAACAGTGAGAATTCTTTTTCATGCCAGGAGAGGTACCGGATTCTGGTAAATGGGTTCCggaacaaaacagtccaaaacTGAGAAGTGCCAGATTCTGTTCCGGAAGGatctggctcaaattaagcactgcgCATAACTCAGACTTTCACATACAGTGAGTGCATCATGCACTGACACCAATtattgtcacgtgtgctccctctctggcctctaggtcaccaggctgctcgttatggcgcacctGCGTGTCCTCAGACTCACCTGGGCTCCATCACTTCCTGATTACCTGCGCTATActgtatatgtcactccctttggttccttccctatatatgtccctccctttggttcctttggttccttccctatatatgtcactccctttggttccttccctatatatgtcactccctttggttccttccctatatatgtcactccctttggttccttccctatatatgtcactccctttggttccttccctatatatgtcactccctttggtttcttccctatatatgtcactccctttggttccttccctatatatgtcactccctttggttccttccctatatatgtcactccttccctatatatgtcactccctttggtttcttccccaggtgt

Function

NR:

description
uncharacterized protein LOC110498267

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956365.1 False 7468 mRNA 0.47 20 42484544 42510757
TU1939691 False 215 lncRNA 0.52 1 42498407 42498621
TU1939686 True 1366 TUCP 0.41 3 42509631 42511247

Neighbor

gene id symbol gene type direction distance location
LOC110499602 LOC106589930 coding upstream 65463 42416095 ~ 42419081 (+)
LOC110499494 LOC106589929 coding upstream 71511 42408262 ~ 42413033 (+)
parga LOC106589925 coding upstream 201756 42173980 ~ 42282788 (+)
LOC110499555 LOC106589919 coding upstream 622152 41830014 ~ 41862392 (+)
LOC118942019 NA coding upstream 788415 41688135 ~ 41696129 (+)
LOC118942073 NA coding downstream 11780 42522510 ~ 42527008 (+)
LOC118942074 NA coding downstream 83247 42594004 ~ 42598619 (+)
LOC110499499 LOC106589923 coding downstream 145000 42655757 ~ 42660010 (+)
LOC110499501 sft2a coding downstream 234407 42745164 ~ 42774109 (+)
LOC118942075 NA coding downstream 292832 42803589 ~ 42827234 (+)
G1695836 NA non-coding upstream 7290 42477020 ~ 42477254 (+)
G1695835 NA non-coding upstream 7701 42476644 ~ 42476843 (+)
G1695834 NA non-coding upstream 9316 42473535 ~ 42475228 (+)
G1695827 NA non-coding upstream 21854 42462276 ~ 42462690 (+)
G1695824 NA non-coding upstream 25589 42458753 ~ 42458955 (+)
G1695849 NA non-coding downstream 1861 42512618 ~ 42512968 (+)
G1695854 NA non-coding downstream 11194 42521951 ~ 42522187 (+)
G1695860 NA non-coding downstream 21162 42531919 ~ 42532423 (+)
G1695861 NA non-coding downstream 22382 42533139 ~ 42533449 (+)
G1695272 NA other upstream 866039 41618027 ~ 41618505 (+)
G1693914 NA other upstream 2271591 40211522 ~ 40212953 (+)
G1693700 NA other upstream 2601919 39881958 ~ 39882625 (+)
G1693699 NA other upstream 2602701 39881349 ~ 39881843 (+)
G1693184 NA other upstream 3124909 39356345 ~ 39359635 (+)
G1696324 NA other downstream 269242 42779999 ~ 42780549 (+)
G1696541 NA other downstream 622870 43133627 ~ 43134013 (+)
LOC110499564 NA other downstream 626636 43137388 ~ 43148369 (+)
G1696563 NA other downstream 696802 43207559 ~ 43209518 (+)
LOC110499605 LOC106590859 other downstream 11010 42484544 ~ 42511247 (+)

Expression


Co-expression Network