LOC110499505 (LOC106589952)


Basic Information

Item Value
gene id LOC110499505
gene name LOC106589952
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 43552789 ~ 43615700 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956406.1
ACCCTGGAcaggctcctcctcctcctccaccctgcatTGCAGTGCTCAAAACCGAACAGTCGCCATTCAAATTCACACAGTCGCCAGAACAAGAACAGCTTTCAACCGGACATAAACAGCGCAGTCATGCTGTACCTCGCTTTGTTTTTCATCTCCGCAGCCGTCGCCACCCCTCTGTTGGGTACTGAACAGTGTGCCCGTGGTCCTCCCTACTGGTGCCACAATGTGAAGACTGCCTCTATCTGTGGCGCCGTGGTCCACTGCCAACAGAACGTATGGAACCAACCCCAGATGAAATCTGTGCCGTGTGACCTGTGTAAGGAGGTGTTGATTGTGGTGGACCAGCTGCTGAAAGACAACGCTACTGAGGGCGAGATCCTGGGCTACCTGGAGAAGGCCTGTGCCTTGGTTCCTGACAAGAATCTGTCTGCAGAGTGTAAGGAGCTGGTAGACAGCTACTACCCTATCCTTATGGGTATCATCACTGGAGAACTGGAGGATCCTCAGGTGGCTTGTGGTGCCATGGGGCTGTGTGACTCCCAGCAGGCAGCTCTGGCCAGGCTGGCTAAGCTCATGTCCAATGAGATCCCCCAGCTCACGTCCAATGAGATCCCCCAGGTAGACCTAGCCCAGAGGGTCGCCCCCTTCCTCCTCAACGTCCCTGGGCTCCTCTACCCTCAGGCGCAGGATAACACCAAGCAGGAACCTGCCGCGGCACAGGAGTCTGGAGATGTGTGTGAGGACTGTGTGAAGTTCATCACAGACACTCAGGAGGAGGCGAAGAGCAACTCTACTTTTGTCAACTCTCTGATCGAGCAGATCCAGGACCAGTGTGACCTGCTGGGGCCTGGTATCTCTGACCTGTGCAAGCAGTACGTCAGCCAGTATGCCCCTCTAATCGTCCAGCAGCTGATGTCCATGcaaccCAAGGATGTCTGTACCTTTGCTGGCTTCTGCTCTGCTGATGTGAAGAGCTCTGTCCCCATGATGAAGCTGGTGGCTGCCAAAACCATCCCCGCTGTCAAACTGGTTCCTGCCACTAAGATGGAGGCTGTCAAGCCTGCCACGGACATGGTGCGTGCCCGTGACTCCCCTCAATGTGCCATGTGTGAGTTCATGATGAAGGAGTTGGAGAGCATGCTGCAGGATGAGAAAACGGAGcAAGATGTGGTGCGTGCTGTGGAGAAGGTGTGCGCTGTGCTGCCCTCCTCCCTGTCGGTCCAGTGTAAGGACCTGATTGAGGCCTACGGCCAGGCCATCATTGAGCTGCTGGTGCAGGAGGCCGACCCGAAGACGATCTGCACCGTGTTGGGGCTCTGTAAGGACGCCAGCCGCGCCTTCATCCCGGTGCTGAACATGGCCCGGGTGGAGGCGGGTGGGTTCTGTGAGGTGTGTAAGGTGGCTGTGCAGTACATCGACGGCATCCTGGAACAGAACGCCACAGAGGCACAGATCGAAGACGCAGTCAGGAAAGTCTGCAGCTTTGTCCCGGAGACCGTGAGGAGCGAGTGTGACCAGCTGGTTGAGCAGTATGAGCCCATGCTGGTTCAGCTCCTCCTGCAGATGTTGGACCCTGACTTTGTCTGCATGAAGTTGGGGGTCTGTCCTGAGGCAGTGCAAAGGCTTCTGGGTATGGAGCAGTGTAGCTGGGGACCCGCCTTCTGGTGCAAGGACATGGACTCCGCGAAACGCTGCAACGCGGTGGCACACTGCAGGCGTCACGTGTGGGAAtag
>XM_036956405.1
CCCTGGAcaggctcctcctcctcctccaccctgcatTGCAGTGCTCAAAACCGAACAGTCGCCATTCAAATTCACACAGTCGCCAGAACAAGAACAGCTTTCAACCGGACATAAACAGCGCAGTCATGCTGTACCTCGCTTTGTTTTTCATCTCCGCAGCCGTCGCCACCCCTCTGTTGGGTACTGAACAGTGTGCCCGTGGTCCTCCCTACTGGTGCCACAATGTGAAGACTGCCTCTATCTGTGGCGCCGTGGTCCACTGCCAACAGAACGTATGGAACCAACCCCAGATGAAATCTGTGCCGTGTGACCTGTGTAAGGAGGTGTTGATTGTGGTGGACCAGCTGCTGAAAGACAACGCTACTGAGGGCGAGATCCTGGGCTACCTGGAGAAGGCCTGTGCCTTGGTTCCTGACAAGAATCTGTCTGCAGAGTGTAAGGAGCTGGTAGACAGCTACTACCCTATCCTTATGGGTATCATCACTGGAGAACTGGAGGATCCTCAGGTGGCTTGTGGTGCCATGGGGCTGTGTGACTCCCAGCAGGCAGCTCTGGCCAGGCTGGCTAAGCTCATGTCCAATGAGATCCCCCAGCTCACGTCCAATGAGATCCCCCAGGTAGACCTAGCCCAGAGGGTCGCCCCCTTCCTCCTCAACGTCCCTGGGCTCCTCTACCCTCAGGCGCAGGATAACACCAAGCAGGAACCTGCCGCGGCACAGGAGTCTGGAGATGTGTGTGAGGACTGTGTGAAGTTCATCACAGACACTCAGGAGGAGGCGAAGAGCAACTCTACTTTTGTCAACTCTCTGATCGAGCAGATCCAGGACCAGTGTGACCTGCTGGGGCCTGGTATCTCTGACCTGTGCAAGCAGTACGTCAGCCAGTATGCCCCTCTAATCGTCCAGCAGCTGATGTCCATGGAACAGcaaccCAAGGATGTCTGTACCTTTGCTGGCTTCTGCTCTGCTGATGTGAAGAGCTCTGTCCCCATGATGAAGCTGGTGGCTGCCAAAACCATCCCCGCTGTCAAACTGGTTCCTGCCACTAAGATGGAGGCTGTCAAGCCTGCCACGGACATGGTGCGTGCCCGTGACTCCCCTCAATGTGCCATGTGTGAGTTCATGATGAAGGAGTTGGAGAGCATGCTGCAGGATGAGAAAACGGAGcAAGATGTGGTGCGTGCTGTGGAGAAGGTGTGCGCTGTGCTGCCCTCCTCCCTGTCGGTCCAGTGTAAGGACCTGATTGAGGCCTACGGCCAGGCCATCATTGAGCTGCTGGTGCAGGAGGCCGACCCGAAGACGATCTGCACCGTGTTGGGGCTCTGTAAGGACGCCAGCCGCGCCTTCATCCCGGTGCTGAACATGGCCCGGGTGGAGGCGGGTGGGTTCTGTGAGGTGTGTAAGGTGGCTGTGCAGTACATCGACGGCATCCTGGAACAGAACGCCACAGAGGCACAGATCGAAGACGCAGTCAGGAAAGTCTGCAGCTTTGTCCCGGAGACCGTGAGGAGCGAGTGTGACCAGCTGGTTGAGCAGTATGAGCCCATGCTGGTTCAGCTCCTCCTGCAGATGTTGGACCCTGACTTTGTCTGCATGAAGTTGGGGGTCTGTCCTGAGGCAGTGCAAAGGCTTCTGGGTATGGAGCAGTGTAGCTGGGGACCCGCCTTCTGGTGCAAGGACATGGACTCCGCGAAACGCTGCAACGCGGTGGCACACTGCAGGCGTCACGTGTGGGAAtagagtggaggagaagaagtGGAGAAGACCTCCCTAAACGTTCGGACCCTTTAGGAAATTAAGGAGAAACACTAGCGCTGCTTAActtttaaatcaaataaaacttttcttctttttttttaaacatgtggaatttaattttttttttttgctcttgtCTAAATTAATTTACCAGGCAGGTTTGAGAGGAGGGAGTTGATGCCTTTTCAGTTCATGTGGGGGAAGAGGTGGTTTTTGGGGCTTCGAGAGGGAATCTACCTGCCTGACTGTTTTAGTTACTGGGACAAACCTCCAAAGCGATACTGTACTGATTATTTTACTATTCCTGGTTTGTGTAAAGATTTCGATTTTCACATGTTTAAGCCTTGTCCTGGACTGAAAAGCACGGCTTGCTTCCTTAGTTCAAGAAACTGGCCCATTTCAAGTACGTGAAGCAGACGGGCGAGAAGATAAatactgctgtgtctgtgtgaaaGAGTGCTTGGATTCTTCCAGTTGAGTCTTAGTGGGTCCTTTTGCCCTCTAGCCTACTCGTTGCCCTACCTACCTTTTGCCCTCTAGCCTACTTGTTGCCCTACCTACCTTTTGCCCTCTAGCCTACTCGTTGCCCTACCTACCACCATCCCTCTAGCCTACTCGTTGCCCTACCTACCACCATCCCTCTAGCCTACTCGTTGCCCTACCTACCACCATCCCTCTAGCCTACTCGTTGCCCTACCTACCACCATCCCTCTAGCCTACTCGTTGCCCTACCTACCACCATCCCTTGCTGTGACGGTATATATCTTACCTTTCTGggatgttttctgtttaacaaagtCTCATCTCCTTAAAGCAAATTTAAATCTCTAGTTTGTAGAAACTGTTGAATTGTGTAGAATACTTTAGTTTTATTATTAAATTGGGTGGTTCTGAAATGGCACCTTTGTCCCTAAAGTAGTGCATTTGATAGAGGGAGTAAGgtgccagtttttttttttttatttttattttttagtcACGACCTGTGTACATTTTTGTTGGCTCGTCCGTTGCCGTGGGTGACGAATCCACTGTAGCACCAAGGGGTGTGGTCTAAAATGTGACTCACTGCCCTGTCCCCCTAATGGCACCTTGGTCCCTATGccctctggtcaaaaggagtgcactatagagggaacgaGGTGCCATGTGGGACGGAGACATCTCTAGCAACAtgctcgtgtgcccccccccccaccccgtcAAGCCTGTTTTGCAGTGTCCCACTCAGCCAACCAATGTGCTGACTGACCTCACCCTGTTTATGCTAATCAATGTTTCTAATGTAACGATGGAGAGCTTGTTGTGATCAATAATCAATGGCTGACGGCCTCGCTGTTCAGCCTGAAACTAATCGATCGGTCAATTTTAACTGAAATAAAATGATCCCAAATCCA
>TU1940982
gtacctatgatgacaattacaggcctcatctttttaagtgggagaacttgcacaattggtggctgactaaatacttttttgccccactgtatatgggggattggaagtgcagacaattacattgatggaagctactcCAAAACATTCACTAATTTGTTTAACATCACAAGTAAACACAAAAGTGATGACATTACGTAAATAAATGGTATCGGATTGCAGGAAGTTAATTGTTTTCTTACCTCAAGACTAAAACTAGTTGgaaagctatttttttttttagtcACGACCTGTGTACATTTTTGTTGGCTCGTCCGTTGCCGTGGGTGACGAATCCACTGTAGCACCAAGGGGTGTGGTCTAAAATGTGACTCACTGCCCTGTCCCCCTAATGGCACCTTGGTCCCTATGccctctggtcaaaaggagtgcactatagagggaacgaGGTGCCATGTGGGACGGAGACATCTCTAGCAACAtgctcgtgtgcccccccccccaccccgtcAAGCCTGTTTTGCAGTGTCCCACTCAGCCAACCAATGTGCTGACTGACCTCACCCTGTTTATGCTAATCAATGTTTCTAATGTAACGATGGAGAGCTTGTTGTGATCAATAATCAATGGCTGACGGCCTCGCTGTTCAGCCTGAAACTAATCGATCGGTCAATTTTAACTGAAATAAAATGATCCCAAATCCACG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956406.1 False 1734 mRNA 0.57 14 43598087 43614283
XM_036956405.1 False 3154 mRNA 0.52 15 43598088 43615698
TU1940982 True 703 lncRNA 0.44 2 43552789 43615700
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118942021 micu1 coding upstream 103906 43448714 ~ 43494181 (+)
LOC110510394 NA coding upstream 195323 43371693 ~ 43402764 (+)
LOC110499564 NA coding upstream 449718 43137388 ~ 43148369 (+)
LOC110499502 pde10a coding upstream 476192 42950949 ~ 43125594 (+)
tbxtb LOC106589941 coding upstream 746348 42846046 ~ 42851739 (+)
LOC110499517 LOC106589992 coding downstream 361582 43977280 ~ 43987101 (+)
LOC110499607 NA coding downstream 408321 44024019 ~ 44028357 (+)
LOC110499515 LOC106589989 coding downstream 418790 44034488 ~ 44055611 (+)
capn2 LOC106589959 coding downstream 475702 44091400 ~ 44134903 (+)
LOC110499567 LOC106589958 coding downstream 519311 44135009 ~ 44181809 (+)
G1696892 NA non-coding upstream 13292 43584329 ~ 43584795 (+)
G1696882 NA non-coding upstream 27276 43569652 ~ 43570811 (+)
G1696879 NA non-coding upstream 35222 43562580 ~ 43562865 (+)
G1696876 NA non-coding upstream 44017 43553730 ~ 43554070 (+)
G1696823 NA non-coding upstream 46893 43537157 ~ 43551194 (+)
G1696903 NA non-coding downstream 5502 43621200 ~ 43621692 (+)
G1696909 NA non-coding downstream 17611 43633309 ~ 43633743 (+)
G1696913 NA non-coding downstream 49746 43665444 ~ 43665678 (+)
G1696914 NA non-coding downstream 50404 43666102 ~ 43712664 (+)
G1696923 NA non-coding downstream 90565 43706263 ~ 43706633 (+)
G1696563 NA other upstream 388569 43207559 ~ 43209518 (+)
G1696541 NA other upstream 464074 43133627 ~ 43134013 (+)
G1696324 NA other upstream 817538 42779999 ~ 42780549 (+)
LOC118942073 NA other upstream 1071079 42522510 ~ 42527008 (+)
G1696904 NA other downstream 7786 43623484 ~ 43626360 (+)
G1696905 NA other downstream 10690 43626388 ~ 43661355 (+)
G1696916 NA other downstream 53866 43669564 ~ 43670353 (+)
G1697152 NA other downstream 251531 43867229 ~ 43908497 (+)
G1697222 NA other downstream 615624 44231322 ~ 44231767 (+)
G1696871 NA non-coding upstream 55689 43496133 ~ 43497100 (+)
G1696870 NA non-coding upstream 60217 43492364 ~ 43492572 (+)
G1696869 NA non-coding upstream 62434 43487901 ~ 43490355 (+)
G1696868 NA non-coding upstream 67363 43485097 ~ 43485426 (+)

Expression

LOC110499505(LOC106589952) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 400.
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LOC110499505(LOC106589952) Expression in each Bioproject

Bar chart with 21 bars.
LOC110499505(LOC106589952) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20000.
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Co-expression Network