LOC110499607


Basic Information

Item Value
gene id LOC110499607
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 44024019 ~ 44028357 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469994.2
GCCAGGCTGCTCTCCTGACTGGGTCCTGGAGCCTACAGTAAGGGGTGAAACGACTGTGTGACCTGGGCTGCAAACTCAGAATGTTCTTCTTGCACTTCCCACATTGTCCACTACGGGAAAGTAGAACATTGGCTGCACCCTTCCCACCTCTTGACTGGCTTCTAATGCCACTACTGTCTTTTATGATACAGACCATGACACCCACCAATTTCCTATGAATAACTGGGAGTTCAATCTTGGTGGGGGACAATAAAGTACAGCATATATCTCAGCTCTTCCACTCATTCCATTCTACGGAGACAAAGGATGCCAGGAGAAAAGGTTAAGGTGAGTCCATGTGTTCAAGTACATCAAGTAAGACTCAAATAAAccccttaaagggatagttcacccaaatgtcGAAAATACATATTGGTTTCTTAATGTCGGGATATTGACCTGTGTTGGTTTTGGGCCACAAATGCTAAACAGTTTGCAGGTAAGGCCAGGTAAGCAAAACCAAAGCACGGATTGCTGTCTTAGctttgtccatagactgcttacagggtaaggaagcagagtaaggaaaccaatatgtaattatataatttgggtgaactgtccctttaaccCCTTCAATAAATAACATTGGTTCATCAAGCAAGACTCAAATGCACCGCTCCCCCCTCCAcgtcacgcacacacgcacacacaagacAGCTGGGAATGGGACCCTTAACATGTCATTGAGGGACATGGTCTGGTATGTTCCGATCTAGAAGCTAATTACAGAGGCTCAAGGTTGAAGCTAGGCACAGGTGTGAAGTTGTAAGAGTCAAAAGGGCTCCAAAAGTTTACAGAAGAAAATGCAGGGCATTAACCCCTTGCACACACAGGTCTCGAAGGAGGTCCCTTTCTTTCCAGCTATGTGACAACCTTGTAGACAGCTTCACACTTTCACTGTCTCGAAGGAGATCACTTTCTTTCCAGCTATGTGACAACCTTGTAGACAGCTTCACACTTTCACTGTCTCGAAGGAGGTCACTTTCTTTCCAGCTATGTGACAACCTTGTAGACAGCTTCACACTTTCACTGTCTCGAAGGAGATCACTTTCTTTCCAGCTATGTCAACCACCACATGACAACCTTGTAGACAGCTTCACACTTTCACTGGTGTCTTCCCACAGCCGCCGGTGTCTCAGACAAAATTAGTACGTTtaacatgcacactaataattcgaTATTAAACCGATTTATGGCAGTAGGGACGTTCATGACCATAGTAAACACCTGAATCGGTGTTCCAGCGGCGTGTTTGATCTGAGCATGTGCAGCGAGGGAAATGAATTAGGAAAGACTTAAATTATGCATCTTAGACATAGTTTTCACAAACACACTTTATACGTCCAAACTAGGGCTTCTCAAAAGAAAATCTACTTGTAATTTTGATTCAGCATTTATCCGAGTGCCATCATGacttcagatgtgtccatgtaaacagcattattagggaaatcgttcttcttgcaaagcatgtaaacgtttaaaacaaactattatattaatctatCCACAATGATTGCATTATTTTGTGCATATAAAATCATACTCAGACCCCTAGTTGTTTTCTTCTGAAAGGTCCCTTGCCTGGGACCTTGTGGCACACTGGTCAAAAAGTTTGTTACTCACCTGATATTGTATCGACCACCAGATAATGTAATAACTTAGGACATTATCCAGGAAACAGTTACATATCAGTTCGACCGTTGTATTAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469994.2 True 1756 mRNA 0.43 3 44024019 44028357

Neighbor

gene id symbol gene type direction distance location
LOC110499517 LOC106589992 coding upstream 36918 43977280 ~ 43987101 (+)
LOC110499505 LOC106589952 coding upstream 408321 43552789 ~ 43615700 (+)
LOC118942021 micu1 coding upstream 529838 43448714 ~ 43494181 (+)
LOC110510394 NA coding upstream 621255 43371693 ~ 43402764 (+)
LOC110499564 NA coding upstream 875650 43137388 ~ 43148369 (+)
LOC110499515 LOC106589989 coding downstream 6131 44034488 ~ 44055611 (+)
capn2 LOC106589959 coding downstream 63043 44091400 ~ 44134903 (+)
LOC110499567 LOC106589958 coding downstream 106652 44135009 ~ 44181809 (+)
LOC110499566 LOC105028001 coding downstream 153631 44181988 ~ 44263417 (+)
LOC110499510 LOC106589963 coding downstream 269811 44298168 ~ 44327249 (+)
G1697166 NA non-coding upstream 69548 43909000 ~ 43954471 (+)
G1697168 NA non-coding upstream 81989 43929897 ~ 43942030 (+)
G1697164 NA non-coding upstream 125504 43891305 ~ 43898515 (+)
G1697161 NA non-coding upstream 135943 43885041 ~ 43888076 (+)
G1697153 NA non-coding upstream 138229 43877796 ~ 43885790 (+)
G1697232 NA non-coding downstream 29101 44057458 ~ 44068769 (+)
G1697234 NA non-coding downstream 31706 44060063 ~ 44061339 (+)
G1697269 NA non-coding downstream 138562 44166919 ~ 44167354 (+)
G1697271 NA non-coding downstream 145824 44174181 ~ 44174521 (+)
G1697277 NA non-coding downstream 171344 44199701 ~ 44200676 (+)
G1697152 NA other upstream 119161 43867229 ~ 43908497 (+)
G1696916 NA other upstream 353666 43669564 ~ 43670353 (+)
G1696905 NA other upstream 362664 43626388 ~ 43661355 (+)
G1696904 NA other upstream 397659 43623484 ~ 43626360 (+)
G1696563 NA other upstream 814501 43207559 ~ 43209518 (+)
G1697222 NA other downstream 202965 44231322 ~ 44231767 (+)
G1697374 NA other downstream 470303 44498660 ~ 44499846 (+)
LOC110499568 LOC106589976 other downstream 858710 44885773 ~ 44922697 (+)
G1698119 yo84 other downstream 1083209 45111566 ~ 45112361 (+)
G1698413 i2b2b other downstream 1667839 45696196 ~ 45697330 (+)

Expression


Co-expression Network