LOC110499513 (LOC106578802)


Basic Information

Item Value
gene id LOC110499513
gene name LOC106578802
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 44057447 ~ 44081042 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005038027.1
CACTAACACTGTACGACTGTTCCTGGGAGAGCAAGGACAGCCCCAAAGAGGACCTGGTCTTCATCATGTGGGCTCCAGAACACTCAACGATCAAGAAGAAGATGAAATACGCCAGCTCAAAGCAATACATTAAAGCAAAGTTCCAAGGTCTGAAGTTTGAGTGGCAGGTGAACGACATGTCAGACGCCAAAGACAGCTCCGTCTTCATCGATaaactgggagggagaggagtcgTTAAAagactggaggggagagaggtctGAGGTCCTGACTCCTGACGCCGCCGTACAACACGGAATCAAAAccagacctggattcaaatactATTCCAAATCCTTCAGATAGTTTCAGCGTTTGCTTAAGGCTGCTTAAGAGTGCCAGGTGGGCAGGTTTTTGAACATTTAGGGATTTTCTACTGATTGCAACAGGCAAGCTCAGTCAAGCACAGCAAAAGTATTTAGAATTATTTTGAATAGttcttgaacccaggtctgttcaaAACACAGAAGCAGCCCACTGCCGGTGTCTCCAACTGAACTGTCCAACGACAGAGTGTGGTAGTTGATTTGGTCTTTGTAGAAACATGCCTTGGTCAATGAAATAGTTACTCATGTAGttgatacattttacatttttccAGACGTGACTGCTCCACGATTTATACAAATTCACATGCATTTCCTGTATCTTGGGATCCTGGTATCATCTTTGAATGTGCTTTTATTTGTGGTATCTTGTGTCTATTGACTCTGTTCCAGAACAATCATGTGATTTTAAGCATACCGTTGATATCACACCTTCCATGTTTGCTGATGTTTTGTTTGAATTGGAAAATGTCACAATAATATTGTTAAAAAAGGAAGATACCTCCACAGAATGTCGATGGCCACCACTTTATAATAAAGAGGAACTGGATTTCCAGTAAA
>XM_021576647.2
aCTGGCCTATCCCCAGGCTACGTTTGCTGTCAGAGGGGAAAACAGGAAGCTGACGGGTGTGTACCACTGCAATCCAACCTCCCACTTTTTCTACCTGCTTTTTCTTTCCCTCGACCAAAGAAGCGCTGGATACACCTATCGTCGTCCTTCTCCTGTCTACTTTCTTCACAGCAGTGTAAATGGCCTCTGGAATAGCGGTCCACGATGACGTCGTTCACACGTTTGACAAGATCAGGGTTCGCCTCCAGGGGGCTGACAAGCAGGAGCAGCTGAAACTGGTGCTCTTCAAGATCAGCGACGATGGGAAATGTATCATCGTGGACGAGGACAAATGCCTGAAGGTCAAGGACCTGAACGGGGAGGAGGACGTATTCAGGAAGATCGTCAACATGATGCCGACAGATGACTGCCGCTATGCCCTGTACGACTGTTCCTGGGAGAGCAAGGACAGCCCCAAAGAGGACCTGGTCTTCATCATGTGGGCTCCAGAACACTCAACGATCAAGAAGAAGATGAAATACGCCAGCTCAAAGCAATACATTAAAGCAAAGTTCCAAGGTCTGAAGTTTGAGTGGCAGGTGAACGACATGTCAGACGCCAAAGACAGCTCCGTCTTCATCGATaaactgggagggagaggagtcgTTAAAagactggaggggagagaggtctGAGGTCCTGACTCCTGACGCCGCCGTACAACACGGAATCAAAAccagacctggattcaaatactATTCCAAATCCTTCAGATAGTTTCAGCGTTTGCTTAAGGCTGCTTAAGAGTGCCAGGTGGGCAGGTTTTTGAACATTTAGGGATTTTCTACTGATTGCAACAGGCAAGCTCAGTCAAGCACAGCAAAAGTATTTAGAATTATTTTGAATAGttcttgaacccaggtctgttcaaAACACAGAAGCAGCCCACTGCCGGTGTCTCCAACTGAACTGTCCAACGACAGAGTGTGGTAGTTGATTTGGTCTTTGTAGAAACATGCCTTGGTCAATGAAATAGTTACTCATGTAGttgatacattttacatttttccAGACGTGACTGCTCCACGATTTATACAAATTCACATGCATTTCCTGTATCTTGGGATCCTGGTATCATCTTTGAATGTGCTTTTATTTGTGGTATCTTGTGTCTATTGACTCTGTTCCAGAACAATCATGTGATTTTAAGCATACCGTTGATATCACACCTTCCATGTTTGCTGATGTTTTGTTTGAATTGGAAAATGTCACAATAATATTGTTAAAAAAGGAAGATACCTCCACAGAATGTCGATGGCCACCACTTTATAATAAAGAGGAACTGGATTTCCAGTAAA

Function

NR:

description
cofilin-2-like

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
K05765 CFL; cofilin

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005038027.1 False 926 mRNA 0.42 3 44057447 44068602
XM_021576647.2 True 1337 mRNA 0.46 5 44057447 44081042
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110499516 LOC106578803 coding downstream 40983 43990389 ~ 44016464 (-)
tbata LOC106577277 coding downstream 91114 43954683 ~ 43966333 (-)
LOC118942076 NA coding downstream 250098 43805498 ~ 43807349 (-)
LOC110492809 unc5b coding downstream 254223 43630001 ~ 43803224 (-)
LOC110499507 LOC106589953 coding downstream 470958 43558407 ~ 43586489 (-)
LOC110499524 LOC106589979 coding upstream 965712 45046754 ~ 45059248 (-)
LOC110499570 NA coding upstream 1010859 45091901 ~ 45097715 (-)
LOC110499526 LOC106578779 coding upstream 1392106 45473148 ~ 45496223 (-)
trnah-gug-109 NA coding upstream 1415997 45497039 ~ 45497110 (-)
LOC110499572 LOC106578653 coding upstream 1419100 45500142 ~ 45560428 (-)
G1697439 NA non-coding downstream 35210 44021530 ~ 44022237 (-)
G1697419 LOC106589992 non-coding downstream 70364 43977375 ~ 43987083 (-)
G1697405 NA non-coding downstream 112701 43933841 ~ 43944746 (-)
G1697404 NA non-coding downstream 118684 43929993 ~ 43938763 (-)
G1697400 NA non-coding downstream 132065 43910469 ~ 43925382 (-)
G1697466 NA non-coding upstream 1929 44082971 ~ 44083254 (-)
G1697420 NA non-coding upstream 51967 44133009 ~ 44134904 (-)
G1697494 NA non-coding upstream 74067 44155109 ~ 44155770 (-)
G1697489 NA non-coding upstream 98661 44179703 ~ 44181788 (-)
G1697534 NA non-coding upstream 137835 44218877 ~ 44219544 (-)
G1697093 NA other downstream 310269 43746499 ~ 43747178 (-)
G1697091 NA other downstream 312345 43744795 ~ 43745102 (-)
G1697090 NA other downstream 315783 43741307 ~ 43741664 (-)
G1697017 NA other downstream 555406 43501425 ~ 43502041 (-)
G1697647 LOC106589972 other upstream 455831 44490843 ~ 44551607 (-)
G1697847 NA other upstream 598400 44679442 ~ 44681205 (-)
G1697879 NA other upstream 678584 44759626 ~ 44760029 (-)
G1697887 NA other upstream 700372 44781414 ~ 44820534 (-)
G1697885 NA other upstream 700470 44781512 ~ 44836723 (-)

Expression

LOC110499513(LOC106578802) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 200.
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LOC110499513(LOC106578802) Expression in each Bioproject

Bar chart with 21 bars.
LOC110499513(LOC106578802) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
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Co-expression Network