Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110499508 |
| gene name | LOC106589972 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048584.1 |
| NCBI id | CM023238.2 |
| chromosome length | 46616863 |
| location | 44402023 ~ 44537718 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: transforming acidic coiled-coil-containing protein 2-like isoform X8 |
| id | description |
|---|---|
| K14282 | TACC2; transforming acidic coiled-coil-containing protein 2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036956435.1 | False | 6231 | mRNA | 0.53 | 12 | 44402023 | 44502063 |
| XM_036956434.1 | False | 8436 | mRNA | 0.53 | 18 | 44402026 | 44528493 |
| XM_036956422.1 | False | 7698 | mRNA | 0.53 | 22 | 44402042 | 44537701 |
| XM_036956423.1 | False | 7689 | mRNA | 0.53 | 21 | 44402042 | 44537701 |
| XM_036956424.1 | False | 7665 | mRNA | 0.53 | 21 | 44402042 | 44537701 |
| XM_036956425.1 | False | 7650 | mRNA | 0.53 | 21 | 44402042 | 44537701 |
| XM_036956426.1 | False | 7650 | mRNA | 0.52 | 22 | 44402042 | 44537701 |
| XM_036956427.1 | False | 7617 | mRNA | 0.53 | 21 | 44402042 | 44537701 |
| XM_036956428.1 | False | 7605 | mRNA | 0.52 | 21 | 44402042 | 44537701 |
| XM_036956429.1 | False | 7557 | mRNA | 0.52 | 20 | 44402042 | 44537701 |
| XR_005038028.1 | False | 7667 | mRNA | 0.53 | 23 | 44402042 | 44537718 |
| XM_036956432.1 | False | 7405 | mRNA | 0.52 | 19 | 44402043 | 44537700 |
| XM_036956431.1 | False | 7454 | mRNA | 0.52 | 20 | 44402043 | 44537701 |
| XM_036956436.1 | False | 7655 | mRNA | 0.53 | 20 | 44402043 | 44537701 |
| XM_036956433.1 | True | 7395 | mRNA | 0.52 | 18 | 44402044 | 44537700 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110499511 | LOC106578785 | coding | upstream | 40049 | 44337645 ~ 44361974 (+) |
| LOC110499510 | LOC106589963 | coding | upstream | 74774 | 44298168 ~ 44327249 (+) |
| LOC110499566 | LOC105028001 | coding | upstream | 138606 | 44181988 ~ 44263417 (+) |
| LOC110499567 | LOC106589958 | coding | upstream | 220214 | 44135009 ~ 44181809 (+) |
| capn2 | LOC106589959 | coding | upstream | 267120 | 44091400 ~ 44134903 (+) |
| LOC110499568 | LOC106589976 | coding | downstream | 348055 | 44885773 ~ 44922697 (+) |
| LOC110515455 | jag1 | coding | downstream | 787183 | 45324901 ~ 45444013 (+) |
| LOC118942022 | NA | coding | downstream | 1141207 | 45678925 ~ 45679902 (+) |
| LOC118942078 | NA | coding | downstream | 1485176 | 46022894 ~ 46025800 (+) |
| tsnax | tsnax | coding | downstream | 1619916 | 46157634 ~ 46174248 (+) |
| G1697341 | NA | non-coding | upstream | 6604 | 44393871 ~ 44395419 (+) |
| G1697327 | NA | non-coding | upstream | 29355 | 44372111 ~ 44372668 (+) |
| G1697303 | NA | non-coding | upstream | 37419 | 44353652 ~ 44364604 (+) |
| G1697325 | NA | non-coding | upstream | 38246 | 44362964 ~ 44363777 (+) |
| G1697324 | NA | non-coding | upstream | 40346 | 44359591 ~ 44361677 (+) |
| G1697675 | NA | non-coding | downstream | 35166 | 44572884 ~ 44573101 (+) |
| G1697680 | NA | non-coding | downstream | 41020 | 44578738 ~ 44578965 (+) |
| G1697682 | NA | non-coding | downstream | 41858 | 44579576 ~ 44579795 (+) |
| G1697685 | NA | non-coding | downstream | 42797 | 44580515 ~ 44580811 (+) |
| G1697747 | NA | non-coding | downstream | 116242 | 44653960 ~ 44654274 (+) |
| G1697222 | NA | other | upstream | 170256 | 44231322 ~ 44231767 (+) |
| G1697152 | NA | other | upstream | 497165 | 43867229 ~ 43908497 (+) |
| G1696916 | NA | other | upstream | 731670 | 43669564 ~ 43670353 (+) |
| G1696905 | NA | other | upstream | 740668 | 43626388 ~ 43661355 (+) |
| G1696904 | NA | other | upstream | 775663 | 43623484 ~ 43626360 (+) |
| G1698119 | yo84 | other | downstream | 573848 | 45111566 ~ 45112361 (+) |
| G1698413 | i2b2b | other | downstream | 1158478 | 45696196 ~ 45697330 (+) |
| G1698414 | NA | other | downstream | 1162372 | 45700090 ~ 45701101 (+) |
| G1698884 | NA | other | downstream | 1651227 | 46188945 ~ 46190421 (+) |
