LOC110499568 (LOC106589976)


Basic Information

Item Value
gene id LOC110499568
gene name LOC106589976
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 44885773 ~ 44922697 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956437.1
TCGGGTTAgataaaatacaatatatatacgTTCGACGTCAATTTGACATGACCCGTATCGGGCGctgaagggagagaaagggggagggggagctgACAGCAAACCAGCAGAGGGGCGTATTAAAAATCACTGGCAGCGCGCTGCGACAGAAAACAGCCTGTATAGCATGCCCATAGGAGTGTGGATTGACTGCGGTTTGGTTTACACCATTTGGACACGGTGAGGAACGGGACGCACTTGGAGCTTGGATTGGATAGCTGCTGGTTTTATGCTGCGCAGAACTCAGCCCAGAATTACCACCACCACGCCTATATTCGCCACTAATGGACGGATAATGTTCGTGGTTGAAAAGGACAACTATTCAAACTAGAAATTATTATTTTGGGGGGGATCCACTTCTTGGCGATTGGATGGTGTGCGAAAGGTAGCCACACCAGCAAGTTCACTCTCTACGCAAATTCAAAATGACACTTTTTGGATAGAGGATAGCCTATGTAATGCATAAGGGATCATTTGTGTCCAAAGCATCAAAACCAAGGAGTGCTGCATACCAcagatgagagagaaggggaacgaGGTTTGATTCTGAAGCTGAGCCAAAGTATTCGTGTAAACAGTGGAGAATGCAGTGGGGGGAAACACGGGCCTGGAACTGGGCTGCACGTTTCTTGATCGTGGAGAGGACTGCACCTGGAGTGCAACAAGCAATAGCCTACATTTCTATAACATGCTAAATTTTGCGCAAGAAAATTGTCCCGCTGTTATTTAAATACTTTTCTCATGGGTAGTGTTATTCAGTCGCCCTGGCAGCATTTGGATAATTAACTTTGGAGATCCATGCCAACATAGAAGCAGCATAGTTCAAGGGGATACCCCAGGGAACCTTGCTGAATGGACCTTTAACTTTGGTTTAACGTTATCCTTTTTACACAGCGAATCCGGACTCACTTTTTGGCACATTTGAAGAACGCTCTCCACCGAGGCTGGTCTGATGTAATTAAAAGTAAACTAAATCAACCTAACCTGATCCCAAACACAAACTTTAGacagattttattttattacgTCCTACCCCCCTTTCCCATTAAAAGTGTACTTCTGAACCTCGAAGTGGCTCCGAAGTGGTGTTGTGACTCCTCGCCCGCAGCGGATCCGGAGCTTGGAGTGTCTGGAGCGGGAGGAGTTGGCGGCGGACCCCCTGTCACACCGCAGGGACCCAAGACGGGTCGGGTGAAAAAGATGGTTCGATTTGCGGCAGAACTGTTGTTGCTTTTAGGACTTCTACTTCTTACCTTACATATTACGGTGTTAAGGAGCAGCCCGCTGAATCAAGGGAATTTAACTTTGAGCCAGGATCAGCAGTATACAGTGATTGCAGAGAATGTCAGAACAGAGAGCAGTTTGTTAGCCCAGCAGGGTCCAGGGAAGCGGAGAGGATCAGAGCCCCAGTCAGCCCAGAGGCCTGCTGTCCTCCCCTGGGCTCCGAGTCAGGCTACCGGAGGCAGCCTGCAGAGAGACAGGCCTGGGGCCTTCCTCCTGGACTTCAGCAACTTCCCTGACCTCTCCAAGGCTGATATAAACAGACAGAACCCCAACATACAGgtGACCATAGAGGTGGTGGACGATCTAGACGGGGCGGAGCATGAGAAAGGCCTGAAGAAGGAGAACAAACCAGGTTTGGCCGCTCCCAACTGGAGAAACTGGTGGCAAAccacctcctcttcatcctcctcctcttcttcttcagtCTTGACCCCACGTCAACCCAAGGAGCAGGCTAGGGAGCAGCAGCCCACCtacagaggaggagtagcaagTGGCAGTAACACAGAGGATAGTAACTTCCTAAAACCACTAGggggctgggagaggagaggaggcgcaGGAGGAGGACGTGCCAGCAAGGTTCAGGCTGAATATGacTATATAGATGGAGACGGTGGCTGGAGTAACTGGTCTCCATGCAGTGTAACCTGTGGGAACGGGAACCAGAAGAGGATCAGGTCATGTGGTTACGCCTGTAGCGCCACAGAGTCACGCACCTGTGACATGTCACCCTGcccagGTATTGAAGATGCGTTCAAGACAGCCGCCACTGAGGTCAGTCTACTGGCTGGAACAGATGAGTTCAACGCTACAGAGCTCTTTGGTGTCGACACAGACAGCTGTGAACGCTGGATGAACTGTAAGTCTGAGTTCCTGAAGAAATACATGACCAAGGTCTCCAACGACCTCCCCAGCTGCCCCTGCTCCTACCCCACCGAGGTGGCCTACAGCACGGCCGACGTCCCCGACCCCGCCACACTCCGGGACTTCCGCTGGAAAGACGCCAGCGGCCCCAAGGAGAAACTAGAGATCTACAAACCCACGGCCCGGTGCTGCATCCGCTCCATGTTAACTCTAGAGTCCACTACTCTGGCTGCACAGCACTGCTGCTACAATGACAACATGAAGCTCATCACCCGGGGTAAAGGAGCAGGAACACCCAACCTCATCAGCAACGAGTTCTCTGCTGACCTCCACTACAAGGTAGACGTCCTGCCCTGGATCATCTGTAAGGGGGACTGGAGTCGCTATAACCAGGTCAGGCCTCCTAACAACGGGCAGAAGTGCCCAGACAACCCCCTGGATGAGAATTACCTCAAACAAGTTGAGGAGGCATGGGAGTTTTAGAACTGGAGAGATGAACATATTAAGGGAAAAAACATATGAAATATTTGTATGAAACTTGTACCTCAATTGCTGCTTCAAACCATCCAAGGCTAGAGTCCAAATGAACAGGACTGTTTGTTGATATCAGCCAACGTGATAAAAGAGACAACGTATTGCTCACATGGACACATCATTGTCCTCAACAGAGACTATGGACTCTATTTTAATAAAACCTAACTCAATGGTAAATCTAACCACTGGCACTAGGGCTACAGGTTCGGGGGCgtgtcagaaatatttttggCTATTTTCATAACCAGAATTATTGTCTCAGTAACAGGCGGTGGTGCataagggctgggttttgatagCAGGCGGTGGTGCataagggctgggttttgatagCAGGCGGTGGTGCataagggctgggttttgatggcAGGCGGTGGTGCataagggctgggttttgatagCAGGCGGTGGTGCATAAGGGCTGGGTATTGATAGCAGGAGGTGGTGCATAAGGGATGGGTATTGATAGCAGGAGGTGGTGCATAAGGGCTGGGTATTGATAGCAGGCGGTGGTGCataagggctgggttttgatagCAGGCGGTGGTGCataagggctgggttttgatagCAGGCGGTGGTGCataagggctgggttttgatagCAGGCGGTGGTGCataagggctgggttttgatagCAGGCGGTGGTGCATAAGGCCTGGGTTTTGATGGCAGGCGGTGGTGCATAAGGCCTGGGTTTTGATGGCAGGCGGTGGTGCATAAGGCCTGGGTTTTGATGGCAGGCGGTGGTGCATAAGGCCTGGGTTTTGATGGCAGGCGGTGGTGCATAAGGCCTGGGTTTTGATGGCAGGCGGTGGTGCataagggctgggttttgatagCAGGCGGTGGTGCATAAGGCCTGGGTTTTGACGGCAGGCGGTGGTGCataagggctgggttttgatagCAGGCGGTGGTGCataagggctgggttttgatgaataaacaagttgaTGCTACAGAATGTCGAAGGCTTGTtgacccctcactggccaatcagaatgggCTCCATGGCTAAATGATGTGGTTTCTTCAAGCTGTGTATTTATGGTATTTTATGTATTGTGTTGTCATCAACTCCTATgttagtccgtaatagtttgttAAAGAGCCtacagaaacaaaataacaacatgtAGACCTATCCTATATTTACTAAACATAGTACATTTGTAGTACATGTTTTTGAACAGTAATTGCTACAATATGCAAATATATTGTTaacatagcattcacactgatatacagagaatgtatgtgaaccctttgaatgacctggatttctgcataaattggtcataaattggatcttcatctaggtcacaacaagacaaacacagtctgcttaaactaataacacacaaacaattctaCGTTTTCATTTTATTAATCACACCGTGTAAACATCCACAGTGGAGGGTGGGAAAAACGTATGAGACCCTTTGTATTtcataactggttgaccctccttcggcagcaataacctcaaccaaacattttctgtagttgcggatcagaccaaaacggtcaggaggaattttggaccattcctctttactcTTAACAACCTCATTACCATCAGCCAAACACAGTATCATAACACAGTCTCCTTACCATCAGCCAAACACAGTATCATCCCAACGCAGCCTCCTTACCATCAGCCAAACACAGTATCATAACACAGCCTCCTTACCATCAGCCAAACACAGTATCATCACAACACAGCCTCCTTACCATCAGCCAAACACAGTATCATAACACAGCCTCCTTACCATCAGCCAAACACAGTATCATCACAACACGGCCTCCTTACCATCAGCCAAACACAGTATCATAACACAGCCTCCTTACCATCAGCCAAACACAGTATCATAACACAGCCTCCTTACCATCAGCCAAACACAGTCTCCTTACCATCAGCCAAACACAGTCTCCTTACATCAGCCAAACACAGTCTCCTTACCATCAGCCAAACACAGTATAATAACAGTCTCTTTACCATCAGCCAAACACAGTATCATCACAACACAGCCTCCTTACCATCAGCCAAACACAGTATCATAACACAGTCTCCTTACCATCAGCCAAACACAGTTTCATCACAACACAGCCTCATTACCATCAGCCAAACACAGTATCATAACAGTCTCCTTACCATCAGCCAAACACAGTATCATAACAGTCTCCTTACCATCAGCCAAACACAGTATCATAAGTCTCCTTACCATCAGCCAAGCACAGAGCCTTCATTTGTATGATATATGCCTCTGTAATGATCAATGTAATGATTAAAAGTAAAACTGTATAATGCATTTTTGCCAATATTCTGTCTGATAATTCTTTAAGTTTCGGGGTTAAAAAGGACAGCTTGATGTAGATTCAGAAAAAAAtggttttatgttattttaatttgTTTCTGATTGAGAACTTGTGTATCTCCATTGCCCAATTGGACACTATGTTTTGAGTGACACCCACCCTGACCCATCAGAAGCTATAGAGAGACACCCCTGACCTATCAGAATCGGAAAGGGTCTCTGTGCTGTGGATAACACAGTTATCCCATTGGAGCTGAGTGCATAGGGGAGGAGCAACATcagaacccagaaccaaatcTTGTGTGTTAGCTATGACATGCATGTTAAGTCTGTCAAGAGTGAATTATCATGACCACGGCTCCCATCCAGAACCTGTGGCGGAATGGGTCACCATTCTGCTAGTTTCCCACTGCCAGACATAACACACAGACTGGCTGTGGTCAGGGCTAGctttctaccatcctctcctaaAGGTGACTTGGGCAGATATATGATATTCCGGTTCCCATATGTGATTATACACTTGTTTATTTAGAATGCActtgtttatttttgttgttgttgacgaaCCCGatctgccctccactctgccctccactctgccctatggatctg
>TU1942524
TACATATTACGGTGTTAAGGAGCAGCCCGCTGAATCAAGGGAATTTAACTTTGAGCCAGGATCAGCAGTATACAGTGATTGCAGAGAATGTCAGAACAGAGAGCAGTTTGTTAGCCCAGCAGGGTCCAGGGAAGCGGAGAGGATCAGAGCCCCAGTCAGCCCAGAGGCCTGCTGTCCTCCCCTGGGCTCCGAGTCAGGCTACCGGAGGCAGCCTGCAGAGAGACAGGCCTGGGGCCTTCCTCCTGGACTTCAGCAACTTCCCTGACCTCTCCAAGGCTGATATAAACAGACAGAACCCCAACATACAGgtGACCATAGAGGTGGTGGACGATCTAGACGGGGCGGAGCATGAGAAAGGCCTGAAGAAGGAGAACAAACCAGGTTTGGCCGCTCCCAACTGGAGAAACTGGTGGCAAAccacctcctcttcatcctcctcctcttcttcttcagtCTTGACCCCACGTCAACCCAAGGAGCAGGCTAGGGAGCAGCAGCCCACCtacagaggaggagtagcaagTGGCAGTAACACAGAGGATAGTAACTTCCTAAAACCACTAGggggctgggagaggagaggaggcgcaGGAGGAGGACGTGCCAGCAAGGTTCAGGCTGAATATGacTATATAGATGGAGACGGTGGCTGGAGTAACTGGTCTCCATGCAGTGTAACCTGTGGGAACGGGAACCAGAAGAGGATCAGGTCATGTGGTTACGCCTGTAGCGCCACAGAGTCACGCACCTGTGACATGTCACCCTGcccagGTATTGAAGATGCGTTCAAGACAGCCGCCACTGAGGTCAGTCTACTGGCTGGAACAGATGAGTTCAACGCTACAGAGCTCTTTGGTGTCGACACAGACAGCTGTGAACGCTGGATGAACTGTAAGTCTGAGTTCCTGAAGAAATACATGACCAAGGTCTCCAACGACCTCCCCAGCTGCCCCTGCTCCTACCCCACCGAGGTGGCCTACAGCACGGCCGACGTCCCCGACC
>TU1942664
GTATCTCCATTGCCCAATTGGACACTATGTTTTGAGTGACACCCACCCTGACCCATCAGAAGCTATAGAGAGACACCCCTGACCTATCAGAATCGGAAAGGGTCTCTGTGCTGTGGATAACACAGTTATCCCATTGGAGCTGAGTGCATAGGGGAGGAGCAACATcagaacccagaaccaaatcTTGTGTGTTAGCTATGACATGCATGTTAAGTCTGTCAAGAGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956437.1 False 5661 mRNA 0.48 6 44885773 44922697
TU1942524 False 1002 TUCP 0.55 6 44887067 44919332
TU1942664 True 227 lncRNA 0.47 1 44922197 44922423

Neighbor

gene id symbol gene type direction distance location
LOC110499508 LOC106589972 coding upstream 348055 44402023 ~ 44537718 (+)
LOC110499511 LOC106578785 coding upstream 523799 44337645 ~ 44361974 (+)
LOC110499510 LOC106589963 coding upstream 558524 44298168 ~ 44327249 (+)
LOC110499566 LOC105028001 coding upstream 622356 44181988 ~ 44263417 (+)
LOC110499567 LOC106589958 coding upstream 703964 44135009 ~ 44181809 (+)
LOC110515455 jag1 coding downstream 402204 45324901 ~ 45444013 (+)
LOC118942022 NA coding downstream 756228 45678925 ~ 45679902 (+)
LOC118942078 NA coding downstream 1100197 46022894 ~ 46025800 (+)
tsnax tsnax coding downstream 1234937 46157634 ~ 46174248 (+)
disc1 LOC106595121 coding downstream 1255904 46178601 ~ 46308949 (+)
G1697820 NA non-coding upstream 1473 44875368 ~ 44884300 (+)
G1697819 NA non-coding upstream 4865 44839543 ~ 44880908 (+)
G1697821 NA non-coding upstream 20502 44862197 ~ 44865271 (+)
G1697808 NA non-coding upstream 49038 44780405 ~ 44836735 (+)
G1697814 NA non-coding upstream 70792 44811857 ~ 44814981 (+)
G1697925 NA non-coding downstream 4748 44927445 ~ 44927695 (+)
G1697926 NA non-coding downstream 5991 44928688 ~ 44929168 (+)
G1697928 NA non-coding downstream 6745 44929442 ~ 44929647 (+)
G1697929 NA non-coding downstream 9841 44932538 ~ 44935045 (+)
G1697931 NA non-coding downstream 12558 44935255 ~ 44935629 (+)
G1697374 NA other upstream 385927 44498660 ~ 44499846 (+)
G1697222 NA other upstream 654006 44231322 ~ 44231767 (+)
G1697152 NA other upstream 980915 43867229 ~ 43908497 (+)
G1696916 NA other upstream 1215420 43669564 ~ 43670353 (+)
G1696905 NA other upstream 1224418 43626388 ~ 43661355 (+)
G1698119 yo84 other downstream 188869 45111566 ~ 45112361 (+)
G1698413 i2b2b other downstream 773499 45696196 ~ 45697330 (+)
G1698414 NA other downstream 777393 45700090 ~ 45701101 (+)
G1698884 NA other downstream 1266248 46188945 ~ 46190421 (+)
LOC110499521 msmb other downstream 1624075 46546637 ~ 46552961 (+)
G1697838 NA non-coding upstream 27638 44893264 ~ 44894559 (+)
LOC110499568 LOC106589976 other upstream 2865 44885773 ~ 44922697 (+)

Expression


Co-expression Network