LOC110499570



Basic Information


Item Value
gene id LOC110499570
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 45091901 ~ 45097715 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036955572.1
ATGGTCCAGAGGAACTCTCAGCTGATGGAGATCACCATAAATGGTTCTTCAGAGGAGCTGATACCAGACCAACATGTATCTGATCTGGTGATCTCCGAGAACCAACAACTAAAGCTGCAGTTGTGCAAAAAAGCGAAGTCTGAAAGTGTAAGCGAGGCCCCAACCCCTGGTGTTAATGGTTACCATGACAACGGACATGTCAGTCAGAACCACCAGATACAGCCGatacaggtggtcagcctgccaggTAAAGAGGAAAAGATCCGGGAGCTCAACCAACAGGTGGACTCTCTACAAAACGTTATCCTACAGGTGCAGGAGATCCACCACGGCCTAGGAGCATTCTGTTCGGAGCTGAAGAGCATGGGTGTAGAGGTGGACACGTCAGGGCTGAGCTTCCCTGAGCTGGAGCAGCGCCTGGGGCTGGCTATGAGACTGCTCAGGGACAAGAGACACAGTCTACAGAGCCTCAGAGAGACCATGAGAGATGCTGGCACTCACAGGAACAAGCCATCAGAGGTTTGTCTTCTGGATAAGATGAAGTTGAACTGTCAGGTGTTTAAAGAAGAGATCTCCCTGGTTTACATCAACAGACAGGTGTCACGTCTACAGACAGCACTACAAGAGTCTAGAAAAGGCTTGTGGAGGTGAATGGGGTACCGGTGAACGATGATGGGGTACAGCTGAGCCCCCTACTCCGCCAGGGACCAAGTGCTCAGATAATCATCCTGAggagacctcctcctcctcccagacccccccccccccctttgaagcaACATCCTCCATTAGGATACACCTAGTACCACCAGGCAATCCCATCAAGCATGACATTGACACCCAATAGACCACCAGGCTGATCCCATCTATCTTTAAGCATGACAGTGTAGTCAAGAACAACACGGCCCCCCGGCTCCATGAGGTCTAAGTCCATCAACCCCGTCAACCAGCAAGCTGAGACCCACAACCTGGTAAACCCTGAGCGCCTCTCTACTCTAACACCACAATGAGCATCAGGAACCTGGGGTCTCCACTGagcctctctctactctacc

Function


NR:

description
uncharacterized protein LOC110499570

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036955572.1 True 1055 mRNA 0.52 6 45091901 45097715
Loading

Neighbor


gene id symbol gene type direction distance location
LOC110499524 LOC106589979 coding downstream 32653 45046754 ~ 45059248 (-)
LOC110499513 LOC106578802 coding downstream 1010859 44057447 ~ 44081042 (-)
LOC110499516 LOC106578803 coding downstream 1075437 43990389 ~ 44016464 (-)
tbata LOC106577277 coding downstream 1125568 43954683 ~ 43966333 (-)
LOC118942076 NA coding downstream 1284552 43805498 ~ 43807349 (-)
LOC110499526 LOC106578779 coding upstream 375433 45473148 ~ 45496223 (-)
trnah-gug-109 NA coding upstream 399324 45497039 ~ 45497110 (-)
LOC110499572 LOC106578653 coding upstream 402427 45500142 ~ 45560428 (-)
LOC110499525 LOC106590005 coding upstream 598467 45696182 ~ 45702569 (-)
LOC110499571 LOC106590004 coding upstream 720730 45818445 ~ 46010842 (-)
G1698093 NA non-coding downstream 3389 45085291 ~ 45088512 (-)
G1698089 NA non-coding downstream 7879 45082653 ~ 45084022 (-)
G1698086 NA non-coding downstream 10560 45081130 ~ 45081341 (-)
G1698083 NA non-coding downstream 11751 45079920 ~ 45080150 (-)
G1698069 NA non-coding downstream 20930 45070765 ~ 45070971 (-)
G1698122 NA non-coding upstream 15508 45113223 ~ 45113786 (-)
G1698123 NA non-coding upstream 17219 45114934 ~ 45115205 (-)
G1698134 NA non-coding upstream 26229 45123944 ~ 45124312 (-)
G1698160 NA non-coding upstream 48045 45145760 ~ 45146176 (-)
G1698161 NA non-coding upstream 52287 45150002 ~ 45157913 (-)
G1697921 NA other downstream 169775 44920379 ~ 44922126 (-)
G1697911 NA other downstream 193350 44895118 ~ 44898551 (-)
G1697885 NA other downstream 255178 44781512 ~ 44836723 (-)
G1697887 NA other downstream 271367 44781414 ~ 44820534 (-)
G1698163 NA other upstream 67991 45165706 ~ 45166383 (-)
G1698656 NA other upstream 564607 45662322 ~ 45663716 (-)
G1699034 NA other upstream 964490 46062205 ~ 46062556 (-)
G1699121 NA other upstream 1194467 46292182 ~ 46293900 (-)
G1699130 NA other upstream 1209440 46307155 ~ 46311243 (-)

Expression


LOC110499570 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.5.
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LOC110499570 Expression in each Bioproject

Bar chart with 11 bars.
LOC110499570 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 5.
End of interactive chart.

Co-expression Network