Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110515455 |
| gene name | jag1 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048584.1 |
| NCBI id | CM023238.2 |
| chromosome length | 46616863 |
| location | 45324901 ~ 45444013 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| jag1 | Enables Notch binding activity and phospholipid binding activity. Involved in several processes, including circulatory system development; negative regulation of cell adhesion; and neuronal stem cell population maintenance. Located in plasma membrane. Colocalizes with membrane. Implicated in Alagille syndrome; congenital heart disease; multiple sclerosis; and tetralogy of Fallot. Biomarker of hepatocellular carcinoma; multiple sclerosis; osteoarthritis; and temporal arteritis. |
| description |
|---|
| protein jagged-1b-like |
| id | name | namespace |
|---|---|---|
| GO:0007219 | Notch signaling pathway | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005112 | Notch binding | molecular_function |
| GO:0005509 | calcium ion binding | molecular_function |
| id | description |
|---|---|
| K06052 | JAG1, CD339; jagged-1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036956440.1 | False | 3927 | mRNA | 0.53 | 26 | 45324901 | 45440892 |
| XM_036956438.1 | False | 7084 | mRNA | 0.48 | 26 | 45324902 | 45444013 |
| XM_036956439.1 | True | 7042 | mRNA | 0.48 | 26 | 45324902 | 45444013 |
45,220,000
45,240,000
45,260,000
45,280,000
45,300,000
45,320,000
45,340,000
45,340,000
45,360,000
45,380,000
45,400,000
45,420,000
45,440,000
45,460,000
NC_048584.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110499568 | LOC106589976 | coding | upstream | 402204 | 44885773 ~ 44922697 (+) |
| LOC110499508 | LOC106589972 | coding | upstream | 787183 | 44402023 ~ 44537718 (+) |
| LOC110499511 | LOC106578785 | coding | upstream | 962927 | 44337645 ~ 44361974 (+) |
| LOC110499510 | LOC106589963 | coding | upstream | 997652 | 44298168 ~ 44327249 (+) |
| LOC110499566 | LOC105028001 | coding | upstream | 1061484 | 44181988 ~ 44263417 (+) |
| LOC118942022 | NA | coding | downstream | 234912 | 45678925 ~ 45679902 (+) |
| LOC118942078 | NA | coding | downstream | 578881 | 46022894 ~ 46025800 (+) |
| tsnax | tsnax | coding | downstream | 713621 | 46157634 ~ 46174248 (+) |
| disc1 | LOC106595121 | coding | downstream | 734588 | 46178601 ~ 46308949 (+) |
| LOC110499530 | LOC106590013 | coding | downstream | 968499 | 46412512 ~ 46501346 (+) |
| G1698261 | NA | non-coding | upstream | 3428 | 45321018 ~ 45321473 (+) |
| G1698259 | NA | non-coding | upstream | 5599 | 45319028 ~ 45319302 (+) |
| G1698241 | NA | non-coding | upstream | 17693 | 45306980 ~ 45307208 (+) |
| G1698239 | NA | non-coding | upstream | 19963 | 45304738 ~ 45304938 (+) |
| G1698206 | NA | non-coding | upstream | 44711 | 45279921 ~ 45280190 (+) |
| G1698313 | NA | non-coding | downstream | 12217 | 45456230 ~ 45457602 (+) |
| G1698265 | NA | non-coding | downstream | 24211 | 45468224 ~ 45522863 (+) |
| G1698338 | NA | non-coding | downstream | 56165 | 45500178 ~ 45501566 (+) |
| G1698347 | NA | non-coding | downstream | 70878 | 45514891 ~ 45586897 (+) |
| G1698350 | NA | non-coding | downstream | 74973 | 45518986 ~ 45519743 (+) |
| G1698119 | yo84 | other | upstream | 212540 | 45111566 ~ 45112361 (+) |
| G1697374 | NA | other | upstream | 825055 | 44498660 ~ 44499846 (+) |
| G1697222 | NA | other | upstream | 1093134 | 44231322 ~ 44231767 (+) |
| G1697152 | NA | other | upstream | 1420043 | 43867229 ~ 43908497 (+) |
| G1698413 | i2b2b | other | downstream | 252183 | 45696196 ~ 45697330 (+) |
| G1698414 | NA | other | downstream | 256077 | 45700090 ~ 45701101 (+) |
| G1698884 | NA | other | downstream | 744932 | 46188945 ~ 46190421 (+) |
| LOC110499521 | msmb | other | downstream | 1102759 | 46546637 ~ 46552961 (+) |
| LOC118942483 | NA | other | downstream | 1137857 | 46580927 ~ 46588053 (+) |
