LOC110499572 (LOC106578653)


Basic Information

Item Value
gene id LOC110499572
gene name LOC106578653
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 45500142 ~ 45560428 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956443.1
GTCAGTCAATGACAGCTGGCTGTCAGAAAGCCCGAGACACAGAGAACTGTCAGTATACGGTAGTAGTTACTATCCTTCCGATTGAACATCGTACATTCATTTGGCTTGGCGAACAATCTCACGAATCAGCGACACAAAAGAGGCGCTGTCACTCTGTCCGTGCCCAGGCCATGGACGAACAGGCAGGGCCCGGGGTTTTCTTCAACAACAACTCTATCTTATCGGGCGGTGGGAAAGGACTGCTACCGGAGGGCGACGCAGCGGAGGCAGCCAGGTCACCGTACAGTATCCCGGGGATCCTACACTTCCTGCAACACGAATGGGCCCGCTTCGACGTGGAGAAGGTGCAATGGGAGTTGCAACGCGCCGAATTACAGGCCCAGATAGCCTtcctgcagggagagaggaaaggacaggagaACCTGAAGAAGGATCTCGTCAGGAGGATTAAGATGCTGGAATATGCCCTCAAACAGGAGAGGTCCAAGTACCACAAGTTAAAATATGGAACGGAGTTGAACCAAGGAGACGTGAAACCTCCCAGCTATGACTACGACGAGGTGATTGAGAATGAGACTCCTGGGTCCTTGAACAACCAGTTGTCCTGGAAACAAGGCCGTCAGCTCCTCAGACAGTATCTCCAGGAGGTGGGTTACGCAGACACCATCCTGGATGTGAAGTCTCGCAGGGTACAAACCCTGCTGTGTCTGGCCGGAGACGGAGGGGGCCCTGTGGAGAGGACGGCCAACGGAACAGACACCCGCACCAGAGGAGGgaaGACAGAGCAATCTGAGTCCAGTGTTGTGCAGGAGGCCTTCAGGTTCATAGAAAGCTCTGCAGCTGACTAcagtgatgaagatgatgatgaagacGGTTCAGGGAATGACAGGACTATCATGGAACGGACAGGACCTACAGGGACGATAGTGAGGAAGAAGCCATCATCTGCCCTGTCCACCAGTATGGACACAAGTGAGGACCCAGACACTGAGGATGCACTGAAGGGCTTTGACTTCCTGTCTAGTCCAGATGATATGGACACATCACCTGAGTCCCGCAGCGCAGGGAACGGGACCAACTGGGAGGAGGAGCAGCAGACTGCCATGTCAGGGGCCTGGGACATGGACCAGGGTCTGATATCCAAACTCAAAGAGGAGTACAGGAAGGAACGCAAGGGGAAAAAAGTAGGGCAGAGACCTAACCGGTCTAAGCTCCAGGACATGTTGGCCAACCTGAGGGACCAGGAGGACATGAATCCCAGAGAACCCTCCTCTACTTCCCAGTCCCGCTCCAACGCACCCAGGCTCAACGACCACcaccaggacaacaacactgatGAAGTGGAGGTGTTGACGGTCCCTCCTTCCTCCGGGAAGGCCTTTATCCTGGGTCCTGATGTGAACATGGAGGCTGAACTGGGCCTGGGAGAGCTAGCTGGTCTTACTGTATCTAATGAGGCTGATAGTCTGACCTATGATATGTCCAACAACAAGGATGCCCTGAGGAGGACGTGGAACCCTAAGTTTACCCTGCGGAGCCACTTTGACGGGATCCGAGGTCTGGCGTTCCACCCCGTAGAAGCGGTTCTAGTCACCGCCTCAGAGGACCACACGCTGAAGATGTGGAACCTGCAGAAGACTTCCCCCACCAAGAAGAATGCCTCTGTAGATGTGGAACCCATGCACACGTTCAGGGCCCACCAGGGTGCAGTGCTGTGTGTTGTGATGAGCAGTACAGGAGAGCAGTGTTTCAGTGGAGGGCTGGACGGCACCATTCAGAGCTGGAACACTCCGAACCCTAACCTAGACCCATACGATTCATACGAGCCGTCTGTCCTGCGTGGGGCGCTGTGTGGTCATACTGACTCGGTGTGGGGTCTGGTGTACAGTGGTGTTTATCAGAGACTCCTGTCTTGCTCTGGAGACGGCACCGTCAGGCTGTGGGACGCCTCCGATACCAAGCCTGCCCTGGTCACCTTCCGCAGTAAAGAGTTTGGCGTGCCCTCGTCAGTGGACGTGGTCTCCAGTGACCCCGCCCACATGGTGACATCTTTCACCAGCGGTCAGATCGGCCTGTTCAACATGGAGACACAGCAACTGGTGCTCAGCCTGGAGTCTGCTGCGGAGACGGgtaCCCCCTGTCAGATCAACAAGGTGCTGAGTCACCCCACCCTCCCCATCACCATCACCGCTGAGGAGGACAAACACATCAAGTTCTACGACAACAACACGGGGAAGCTGGTCCACTCGATGGTGGCCCACCTGGATGCTGTTACCAGTCTAGCTGTCGACCCCAATGGTCTCTATCTGATGTCTGGCAgTCATGACTGTTCTATTCGTCTGTGGAACCTAGAGACTAAGACGTGTGTCCAGGAGTTTACAGCTCACAGGAAGAAGAATGATGAGTCTATCCATGACGTGGCCTTCCACCCCTCTAAGGCCTACATCGCCTCCGCCGGGGCAGACGCTCTTGCCAAGGTGTTCGTATGACGAGGACCAATCACAGTCCACTGACACAGCTTCCTAGCTCCAGGGACCAATAGATGTGGGCGTGTGGGGTGCTACGCAGACTTTACCTCACACATATCCCCTCTCACGCTACTGGTTCCCTGTTTTGACTGGTGGATGGTGCAGCCAATAGCCTCTACTAAGCCCTAGACTAGGCCCTCCTCCAGAGGGAGAGGGTCAGGGCTGTGGTTGACTGGGAGGTCTGTTAGGAGAACTGCTATTGGGCACAAGgcttcctcctccctctataaTCCAGGCATGCCCCTGGGTGTGACCGGCCACAGAGACCCTCCTCCTGCATCCAATGAACACCCACAAAGACTGACTATGGTTCAGACTAATCTTATGGTCTGTCTGCAGCTAGCGAGGGGGTTGAAGATAGACTGACAGGTGTTTTATAGTGTAGACTCACTGGAGAATTGGGAGCACCAtgccctaaccccctaaccctaccccctccccctaaccctaccccctcCCCATGTCAACAAGCCCATTAACCAGAACCCCAGGCCTCTCATTTTACCAGAACCCCGGGCCTCTCCTTTCCCCAGAACCCCGGGCCTCTCCTTTCCCCAGAACCCCGGGCCTCTCCTTTCCCCAGAACCCCGGGCCTCTCCTTTCCCCGGAACCCCGGGCCTCTCCTTTCCCCAGAACCCCGGCCTCTCCTTTCCCCAGAACCCCAGGCCTCTCATTTCCCCAGAACCCCAGGCCTCTCATTTCCCCAGAACCCCAGGCCTCTCATTTCCCCAGAACCACAAGCCTCTCATTTCCCCAGAACCCCAGGCCTCTCATTTCCCCAGAACCCCAGGCCTCTCATTTCCCCAGAACCCCAGGCCTCTCATTTCCCCAATCTCTAGGCTCAGGCTTCTCCCATTTAGACCCCTGTCTGCTCCCtggtccctcctctccttctcctccaagTCAGGttcagagttgtgttgtgatgGAGATATGGGGTACTTACTGAAGACTGGCTGTGGCGTCTCACTATTCTTTTCTGCTTCTACTCTGCCTGCCTCCAGccagcctttctctctctctctgctttccttTTAAGAACACTTATTGACAAATGTGCCTTTGCTTTAAAAAGGTCTTGAAACAGAAGTTCTTTAACAGAACTGTTTTTTTGAGGGAGGTGGAGTTAATGAGGAAAGGTTTTCACGATGGTGTCCGTTTTTACAAAAACATTGGGTGTAAAATTGCAAATAcctataataaatatatattaagTCTTAACTTA
>XM_036956444.1
GTCAGTCAATGACAGCTGGCTGTCAGAAAGCCCGAGACACAGAGAACTGTCAGTATACGGTAGTAGTTACTATCCTTCCGATTGAACATCGTACATTCATTTGGCTTGGCGAACAATCTCACGAATCAGCGACACAAAAGAGGCGCTGTCACTCTGTCCGTGCCCAGGCCATGGACGAACAGGCAGGGCCCGGGGTTTTCTTCAACAACAACTCTATCTTATCGGGCGGTGGGAAAGGACTGCTACCGGAGGGCGACGCAGCGGAGGCAGCCAGGTCACCGTACAGTATCCCGGGGATCCTACACTTCCTGCAACACGAATGGGCCCGCTTCGACGTGGAGAAGGTGCAATGGGAGTTGCAACGCGCCGAATTACAGGCCCAGATAGCCTtcctgcagggagagaggaaaggacaggagaACCTGAAGAAGGATCTCGTCAGGAGGATTAAGATGCTGGAATATGCCCTCAAACAGGAGAGGTCCAAGTACCACAAGTTAAAATATGGAACGGAGTTGAACCAAGGAGACGTGAAACCTCCCAGCTATGACTACGACGAGGTGATTGAGAATGAGACTCCTGGGTCCTTGAACAACCAGTTGTCCTGGAAACAAGGCCGTCAGCTCCTCAGACAGTATCTCCAGGAGGTGGGTTACGCAGACACCATCCTGGATGTGAAGTCTCGCAGGGTACAAACCCTGCTGTGTCTGGCCGGAGACGGAGGGGGCCCTGTGGAGAGGACGGCCAACGGAACAGACACCCGCACCAGAGGAGGgaaGACAGAGCAATCTGAGTCCAGTGTTGTGCAGGAGGCCTTCAGGTTCATAGAAAGCTCTGCAGCTGACTAcagtgatgaagatgatgatgaagacGGTTCAGGGAATGACAGGACTATCATGGAACGGACAGGACCTACAGGGACGATAGTGAGGAAGAAGCCATCATCTGCCCTGTCCACCAGTATGGACACAAGTGAGGACCCAGACACTGAGGATGCACTGAAGGGCTTTGACTTCCTGTCTAGTCCAGATGATATGGACACATCACCTGAGTCCCGCAGCGCAGGGAACGGGACCAACTGGGGACCTAACCGGTCTAAGCTCCAGGACATGTTGGCCAACCTGAGGGACCAGGAGGACATGAATCCCAGAGAACCCTCCTCTACTTCCCAGTCCCGCTCCAACGCACCCAGGCTCAACGACCACcaccaggacaacaacactgatGAAGTGGAGGTGTTGACGGTCCCTCCTTCCTCCGGGAAGGCCTTTATCCTGGGTCCTGATGTGAACATGGAGGCTGAACTGGGCCTGGGAGAGCTAGCTGGTCTTACTGTATCTAATGAGGCTGATAGTCTGACCTATGATATGTCCAACAACAAGGATGCCCTGAGGAGGACGTGGAACCCTAAGTTTACCCTGCGGAGCCACTTTGACGGGATCCGAGGTCTGGCGTTCCACCCCGTAGAAGCGGTTCTAGTCACCGCCTCAGAGGACCACACGCTGAAGATGTGGAACCTGCAGAAGACTTCCCCCACCAAGAAGAATGCCTCTGTAGATGTGGAACCCATGCACACGTTCAGGGCCCACCAGGGTGCAGTGCTGTGTGTTGTGATGAGCAGTACAGGAGAGCAGTGTTTCAGTGGAGGGCTGGACGGCACCATTCAGAGCTGGAACACTCCGAACCCTAACCTAGACCCATACGATTCATACGAGCCGTCTGTCCTGCGTGGGGCGCTGTGTGGTCATACTGACTCGGTGTGGGGTCTGGTGTACAGTGGTGTTTATCAGAGACTCCTGTCTTGCTCTGGAGACGGCACCGTCAGGCTGTGGGACGCCTCCGATACCAAGCCTGCCCTGGTCACCTTCCGCAGTAAAGAGTTTGGCGTGCCCTCGTCAGTGGACGTGGTCTCCAGTGACCCCGCCCACATGGTGACATCTTTCACCAGCGGTCAGATCGGCCTGTTCAACATGGAGACACAGCAACTGGTGCTCAGCCTGGAGTCTGCTGCGGAGACGGgtaCCCCCTGTCAGATCAACAAGGTGCTGAGTCACCCCACCCTCCCCATCACCATCACCGCTGAGGAGGACAAACACATCAAGTTCTACGACAACAACACGGGGAAGCTGGTCCACTCGATGGTGGCCCACCTGGATGCTGTTACCAGTCTAGCTGTCGACCCCAATGGTCTCTATCTGATGTCTGGCAgTCATGACTGTTCTATTCGTCTGTGGAACCTAGAGACTAAGACGTGTGTCCAGGAGTTTACAGCTCACAGGAAGAAGAATGATGAGTCTATCCATGACGTGGCCTTCCACCCCTCTAAGGCCTACATCGCCTCCGCCGGGGCAGACGCTCTTGCCAAGGTGTTCGTATGACGAGGACCAATCACAGTCCACTGACACAGCTTCCTAGCTCCAGGGACCAATAGATGTGGGCGTGTGGGGTGCTACGCAGACTTTACCTCACACATATCCCCTCTCACGCTACTGGTTCCCTGTTTTGACTGGTGGATGGTGCAGCCAATAGCCTCTACTAAGCCCTAGACTAGGCCCTCCTCCAGAGGGAGAGGGTCAGGGCTGTGGTTGACTGGGAGGTCTGTTAGGAGAACTGCTATTGGGCACAAGgcttcctcctccctctataaTCCAGGCATGCCCCTGGGTGTGACCGGCCACAGAGACCCTCCTCCTGCATCCAATGAACACCCACAAAGACTGACTATGGTTCAGACTAATCTTATGGTCTGTCTGCAGCTAGCGAGGGGGTTGAAGATAGACTGACAGGTGTTTTATAGTGTAGACTCACTGGAGAATTGGGAGCACCAtgccctaaccccctaaccctaccccctccccctaaccctaccccctcCCCATGTCAACAAGCCCATTAACCAGAACCCCAGGCCTCTCATTTTACCAGAACCCCGGGCCTCTCCTTTCCCCAGAACCCCGGGCCTCTCCTTTCCCCAGAACCCCGGGCCTCTCCTTTCCCCAGAACCCCGGGCCTCTCCTTTCCCCGGAACCCCGGGCCTCTCCTTTCCCCAGAACCCCGGCCTCTCCTTTCCCCAGAACCCCAGGCCTCTCATTTCCCCAGAACCCCAGGCCTCTCATTTCCCCAGAACCCCAGGCCTCTCATTTCCCCAGAACCACAAGCCTCTCATTTCCCCAGAACCCCAGGCCTCTCATTTCCCCAGAACCCCAGGCCTCTCATTTCCCCAGAACCCCAGGCCTCTCATTTCCCCAATCTCTAGGCTCAGGCTTCTCCCATTTAGACCCCTGTCTGCTCCCtggtccctcctctccttctcctccaagTCAGGttcagagttgtgttgtgatgGAGATATGGGGTACTTACTGAAGACTGGCTGTGGCGTCTCACTATTCTTTTCTGCTTCTACTCTGCCTGCCTCCAGccagcctttctctctctctctgctttccttTTAAGAACACTTATTGACAAATGTGCCTTTGCTTTAAAAAGGTCTTGAAACAGAAGTTCTTTAACAGAACTGTTTTTTTGAGGGAGGTGGAGTTAATGAGGAAAGGTTTTCACGATGGTGTCCGTTTTTACAAAAACATTGGGTGTAAAATTGCAAATAcctataataaatatatattaagTCTTAACTTA

Function

NR:

description
PREDICTED: striatin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956443.1 False 3753 mRNA 0.54 17 45500142 45560428
XM_036956444.1 True 3642 mRNA 0.54 16 45500142 45560428

Neighbor

gene id symbol gene type direction distance location
trnah-gug-109 NA coding downstream 3032 45497039 ~ 45497110 (-)
LOC110499526 LOC106578779 coding downstream 3919 45473148 ~ 45496223 (-)
LOC110499570 NA coding downstream 402427 45091901 ~ 45097715 (-)
LOC110499524 LOC106589979 coding downstream 440894 45046754 ~ 45059248 (-)
LOC110499513 LOC106578802 coding downstream 1419100 44057447 ~ 44081042 (-)
LOC110499525 LOC106590005 coding upstream 135754 45696182 ~ 45702569 (-)
LOC110499571 LOC106590004 coding upstream 258017 45818445 ~ 46010842 (-)
LOC118942079 gng4 coding upstream 498953 46059381 ~ 46096552 (-)
LOC110499608 NA coding upstream 590146 46150574 ~ 46152253 (-)
LOC118942023 NA coding upstream 820674 46381102 ~ 46409653 (-)
G1698582 NA non-coding downstream 15341 45482990 ~ 45484801 (-)
G1698552 NA non-coding downstream 81376 45418296 ~ 45418766 (-)
G1698531 NA non-coding downstream 130847 45368795 ~ 45369295 (-)
G1698258 NA non-coding downstream 182020 45317912 ~ 45318122 (-)
G1698242 NA non-coding downstream 193008 45306660 ~ 45307134 (-)
G1698630 NA non-coding upstream 31440 45591868 ~ 45592079 (-)
G1698635 NA non-coding upstream 46586 45607014 ~ 45610852 (-)
G1698637 NA non-coding upstream 49781 45610209 ~ 45610646 (-)
G1698681 NA non-coding upstream 133442 45693870 ~ 45694157 (-)
G1698682 NA non-coding upstream 133937 45694365 ~ 45694565 (-)
G1698163 NA other downstream 333759 45165706 ~ 45166383 (-)
G1697921 NA other downstream 578016 44920379 ~ 44922126 (-)
G1697911 NA other downstream 601591 44895118 ~ 44898551 (-)
G1697885 NA other downstream 663419 44781512 ~ 44836723 (-)
G1698656 NA other upstream 101894 45662322 ~ 45663716 (-)
G1699034 NA other upstream 501777 46062205 ~ 46062556 (-)
G1699121 NA other upstream 731754 46292182 ~ 46293900 (-)
G1699130 NA other upstream 746727 46307155 ~ 46311243 (-)

Expression


Co-expression Network