tsnax (tsnax)


Basic Information

Item Value
gene id tsnax
gene name tsnax
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 46157634 ~ 46174248 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576663.2
CTTCTTCAACTTGCACACAATCACAAATAAACAGTCACTTCAGGTTGTAATCAAATGCTGCTAGCTAGGTAACTGTAAAATAAGAATATTCTTGTACGATAATACGATTATATAGAAGTTATGAGCAAGCGGGAAGGTGAAGGGTATCCCCGGAGGATGAAGACAAGTCAGAAAACAGATGACCGCGACACAGGAGCTAACCTGACATCACCTGTGATGGCTGCATTCAAAGTGTTCCAGCAGGAGCTAGACACCAAACATGACAAGCATGAGCGCCTGGTCAAACTCAGCAGAGACATCACCATTGAAAGCAAGAGGACAATATTTCTACTGCACAGAGTCACCAGTGTCCCAGATGTGGAGGAGGTCCTCACAGAAGCTGATCTGAAGCTGGATGGAGTGAGACTGAACATCAGAATGATTGCTGAGGAGCTCAGAGGAGAGGACCTGCACCAGTTCCATAGAGCCTTCACACCAGgtaTCCAGGAGTACGTGGAGGCTGTGTCGTTCCATCACTTCATCAGACATCGTACTCTCATCAGCCTGGAGGAGATTAACACCAAGCTGGTCTTCGTCAAGGAGCCTGAGGACACCCCAGAGAGCCAGCAGCCAATGGGAACCCCCCAAGTGCTGACCTTTCAGGTGACCCCTACAGACTACCTGTTGGGCGTGGCCGACCTGACAGGTGAGCTGATGAGGATGTGTATCAGTAGCGTGGGGAACGGGGACATGGACACGCCCTTCCAGGTGTCCATGTTCCTGCGTCAGATCCACGATGGTTTCTCCTACATCGGTAACACTGGTCCGTATGAGGTCAGTAAGAAGCTCCACACGCTGAGACAGAGCCTGTCCAAGGTGGAGGATGCCTGCTATACCCTGAAGGTGCGGGGGTCAGAGATCCCCAAACACATGCTGGCTGACGTCTTCTCCAGCAGGACAGCCATGATGGACCAGGACGAAGGAATGGCCTAGCGATGGGGGTGGGGTTTAATGGTGGAGGTGGGGTGTAATGATCTGGAAAGGGGTAGGGTTAAATGATGGGCGtggtctgtacctaggggaaacttcaccccgaGCCCTGTTACGCAgtcagggtcatgttcagtaggcaaAATGTTGTGGAACTTTGCAGATAGAAATCTATAAAGATGTGATGATTCCTTTTTCTGGATGTTcaagaggcatgtttgttctacaaagtacatttctatctgaaagtTCCACAACGTTATACCCTGGTTTGTTATTGTTCTGTGGTGACATCTGATGTTGGTCTGGATAATGCGTTTGTTATGGTATTTGGTGTCAACTGTTGTTTCATTCCAAACATTGTTCATTGCTGTTTGTTCTGAATCGGATCAGTGTCGTCACAATCTCTGCTGTGCCAAACGGTCAATCCCAATCTGAAGGTCGTTAAGTTATAGCATGTAAAATGTCACTCTTAATTTAGTATTTTTCAATAAAGTTCAAAATGTGTTGTGATGATGACACTCTCAggca
>XM_021576664.2
CACAAATAAACAGTCACTTCAGGTTGTAATCAAATGCTGCTAGCTAGGTGAAGGGTATCCCCGGAGGATGAAGACAAGTCAGAAAACAGATGACCGCGACACAGGAGCTAACCTGACATCACCTGTGATGGCTGCATTCAAAGTGTTCCAGCAGGAGCTAGACACCAAACATGACAAGCATGAGCGCCTGGTCAAACTCAGCAGAGACATCACCATTGAAAGCAAGAGGACAATATTTCTACTGCACAGAGTCACCAGTGTCCCAGATGTGGAGGAGGTCCTCACAGAAGCTGATCTGAAGCTGGATGGAGTGAGACTGAACATCAGAATGATTGCTGAGGAGCTCAGAGGAGAGGACCTGCACCAGTTCCATAGAGCCTTCACACCAGgtaTCCAGGAGTACGTGGAGGCTGTGTCGTTCCATCACTTCATCAGACATCGTACTCTCATCAGCCTGGAGGAGATTAACACCAAGCTGGTCTTCGTCAAGGAGCCTGAGGACACCCCAGAGAGCCAGCAGCCAATGGGAACCCCCCAAGTGCTGACCTTTCAGGTGACCCCTACAGACTACCTGTTGGGCGTGGCCGACCTGACAGGTGAGCTGATGAGGATGTGTATCAGTAGCGTGGGGAACGGGGACATGGACACGCCCTTCCAGGTGTCCATGTTCCTGCGTCAGATCCACGATGGTTTCTCCTACATCGGTAACACTGGTCCGTATGAGGTCAGTAAGAAGCTCCACACGCTGAGACAGAGCCTGTCCAAGGTGGAGGATGCCTGCTATACCCTGAAGGTGCGGGGGTCAGAGATCCCCAAACACATGCTGGCTGACGTCTTCTCCAGCAGGACAGCCATGATGGACCAGGACGAAGGAATGGCCTAGCGATGGGGGTGGGGTTTAATGGTGGAGGTGGGGTGTAATGATCTGGAAAGGGGTAGGGTTAAATGATGGGCGtggtctgtacctaggggaaacttcaccccgaGCCCTGTTACGCAgtcagggtcatgttcagtaggcaaAATGTTGTGGAACTTTGCAGATAGAAATCTATAAAGATGTGATGATTCCTTTTTCTGGATGTTcaagaggcatgtttgttctacaaagtacatttctatctgaaagtTCCACAACGTTATACCCTGGTTTGTTATTGTTCTGTGGTGACATCTGATGTTGGTCTGGATAATGCGTTTGTTATGGTATTTGGTGTCAACTGTTGTTTCATTCCAAACATTGTTCATTGCTGTTTGTTCTGAATCGGATCAGTGTCGTCACAATCTCTGCTGTGCCAAACGGTCAATCCCAATCTGAAGGTCGTTAAGTTATAGCATGTAAAATGTCACTCTTAATTTAGTATTTTTCAATAAAGTTCAAAATGTGTTGTGATGATGACACTCTCAggca
>XM_021576666.2
AACATTATGTATGATGTGTATAGTCGCAATGCTCTGGATTTGATACGGGACAAAAACTGCGGACTCCTAATTTCGCATCAATGCAGCTCCACATGTGGAAttcacatagctagctagctaatcacGTTTGTTCCATAAAGCCTACACTCGCTATATTTATGCAATAAGCCCCAATGGGGTGTGGTAGATGGACAATATACTTTCTTACGCAtcacgcaacgcggagtgcctggatacagcccttagccgtggaataTTGGTCAAGTACAACAAACtaccgagGTGAAGGGTATCCCCGGAGGATGAAGACAAGTCAGAAAACAGATGACCGCGACACAGGAGCTAACCTGACATCACCTGTGATGGCTGCATTCAAAGTGTTCCAGCAGGAGCTAGACACCAAACATGACAAGCATGAGCGCCTGGTCAAACTCAGCAGAGACATCACCATTGAAAGCAAGAGGACAATATTTCTACTGCACAGAGTCACCAGTGTCCCAGATGTGGAGGAGGTCCTCACAGAAGCTGATCTGAAGCTGGATGGAGTGAGACTGAACATCAGAATGATTGCTGAGGAGCTCAGAGGAGAGGACCTGCACCAGTTCCATAGAGCCTTCACACCAGgtaTCCAGGAGTACGTGGAGGCTGTGTCGTTCCATCACTTCATCAGACATCGTACTCTCATCAGCCTGGAGGAGATTAACACCAAGCTGGTCTTCGTCAAGGAGCCTGAGGACACCCCAGAGAGCCAGCAGCCAATGGGAACCCCCCAAGTGCTGACCTTTCAGGTGACCCCTACAGACTACCTGTTGGGCGTGGCCGACCTGACAGaaatTCCTGTTAGCGTATTCCCAGACTCGGGAGGGAATAAGCATGAAATCCAGGAATAATCCAAGAAGGATTTCTGGGAATTTTGGTAAAGTTACCAGACTTTTGTAAGCCTCGTCACTGTAAAAACACAGACAACTACTGATGTAAAATCACAGACAACTACTGATGTAAAAAGGctgtctgacagacagactggaTCTAGATATTGTTGTCACTGTAAAACACTGTGACAACTCCTCATGTAGAAAGTGCTTTATAAAT
>XM_021576665.2
AACATTATGTATGATGTGTATAGTCGCAATGCTCTGGATTTGATACGGGACAAAAACTGCGGACTCCTAATTTCGCATCAATGCAGCTCCACATGTGGAAttcacatagctagctagctaatcacGTTTGTTCCATAAAGCCTACACTCGCTATATTTATGCAATAAGCCCCAATGGGGTGTGGTAGATGGACAATATACTTTCTTACGCAtcacgcaacgcggagtgcctggatacagcccttagccgtggaataTTGGTCAAGTACAACAAACtaccgagTGTCCCAGATGTGGAGGAGGTCCTCACAGAAGCTGATCTGAAGCTGGATGGAGTGAGACTGAACATCAGAATGATTGCTGAGGAGCTCAGAGGAGAGGACCTGCACCAGTTCCATAGAGCCTTCACACCAGgtaTCCAGGAGTACGTGGAGGCTGTGTCGTTCCATCACTTCATCAGACATCGTACTCTCATCAGCCTGGAGGAGATTAACACCAAGCTGGTCTTCGTCAAGGAGCCTGAGGACACCCCAGAGAGCCAGCAGCCAATGGGAACCCCCCAAGTGCTGACCTTTCAGGTGACCCCTACAGACTACCTGTTGGGCGTGGCCGACCTGACAGGTGAGCTGATGAGGATGTGTATCAGTAGCGTGGGGAACGGGGACATGGACACGCCCTTCCAGGTGTCCATGTTCCTGCGTCAGATCCACGATGGTTTCTCCTACATCGGTAACACTGGTCCGTATGAGGTCAGTAAGAAGCTCCACACGCTGAGACAGAGCCTGTCCAAGGTGGAGGATGCCTGCTATACCCTGAAGGTGCGGGGGTCAGAGATCCCCAAACACATGCTGGCTGACGTCTTCTCCAGCAGGACAGCCATGATGGACCAGGACGAAGGAATGGCCTAGCGATGGGGGTGGGGTTTAATGGTGGAGGTGGGGTGTAATGATCTGGAAAGGGGTAGGGTTAAATGATGGGCGtggtctgtacctaggggaaacttcaccccgaGCCCTGTTACGCAgtcagggtcatgttcagtaggcaaAATGTTGTGGAACTTTGCAGATAGAAATCTATAAAGATGTGATGATTCCTTTTTCTGGATGTTcaagaggcatgtttgttctacaaagtacatttctatctgaaagtTCCACAACGTTATACCCTGGTTTGTTATTGTTCTGTGGTGACATCTGATGTTGGTCTGGATAATGCGTTTGTTATGGTATTTGGTGTCAACTGTTGTTTCATTCCAAACATTGTTCATTGCTGTTTGTTCTGAATCGGATCAGTGTCGTCACAATCTCTGCTGTGCCAAACGGTCAATCCCAATCTGAAGGTCGTTAAGTTATAGCATGTAAAATGTCACTCTTAATTTAGTATTTTTCAATAAAGTTCAAAATGTGTTGTGATGATGACACTCTCAggca
>XM_021576667.2
ACATTATGTATGATGTGTATAGTCGCAATGCTCTGGATTTGATACGGGACAAAAACTGCGGACTCCTAATTTCGCATCAATGCAGCTCCACATGTGGAAttcacatagctagctagctaatcacGTTTGTTCCATAAAGCCTACACTCGCTATATTTATGCAATAAGCCCCAATGGGGTGTGGTAGATGGACAATATACTTTCTTACGCAtcacgcaacgcggagtgcctggatacagcccttagccgtggaataTTGGTCAAGTACAACAAACtaccgagGTGAAGGGTATCCCCGGAGGATGAAGACAAGTCAGAAAACAGATGACCGCGACACAGGAGCTAACCTGACATCACCTGTGATGGCTGCATTCAAAGTGTTCCAGCAGGAGCTAGACACCAAACATGACAAGCATGAGCGCCTGGTCAAACTCAGCAGAGACATCACCATTGAAAGCAAGAGGACAATATTTCTACTGCACAGAGTCACCAGTGTCCCAGATGTGGAGGAGGTCCTCACAGAAGCTGATCTGAAGCTGGATGGAGTGAGACTGAACATCAGAATGATTGCTGAGGAGCTCAGAGGAGAGGACCTGCACCAGTTCCATAGAGCCTTCACACCAGgtaTCCAGGAGTACGTGGAGGCTGTGTCGTTCCATCACTTCATCAGACATCGTACTCTCATCAGCCTGGAGGAGATTAACACCAAGCTGGTCTTCGTCAAGGAGCCTGAGGACACCCCAGAGAGCCAGCAGCCAATGGGAACCCCCCAAGTGCTGACCTTTCAGGTGACCCCTACAGACTACCTGTTGGGCGTGGCCGACCTGACAGGTGTCCATGTTCCTGCGTCAGATCCACGATGGTTTCTCCTACATCGGTAACACTGGTCCGTATGAGGTCAGTAAGAAGCTCCACACGCTGAGACAGAGCCTGTCCAAGGTGGAGGATGCCTGCTATACCCTGAAGGTGCGGGGGTCAGAGATCCCCAAACACATGCTGGCTGACGTCTTCTCCAGCAGGACAGCCATGATGGACCAGGACGAAGGAATGGCCTAGCGATGGGGGTGGGGTTTAATGGTGGAGGTGGGGTGTAATGATCTGGAAAGGGGTAGGGTTAAATGATGGGCGtggtctgtacctaggggaaacttcaccccgaGCCCTGTTACGCAgtcagggtcatgttcagtaggcaaAATGTTGTGGAACTTTGCAGATAGAAATCTATAAAGATGTGATGATTCCTTTTTCTGGATGTTcaagaggcatgtttgttctacaaagtacatttctatctgaaagtTCCACAACGTTATACCCTGGTTTGTTATTGTTCTGTGGTGACATCTGATGTTGGTCTGGATAATGCGTTTGTTATGGTATTTGGTGTCAACTGTTGTTTCATTCCAAACATTGTTCATTGCTGTTTGTTCTGAATCGGATCAGTGTCGTCACAATCTCTGCTGTGCCAAACGGTCAATCCCAATCTGAAGGTCGTTAAGTTATAGCATGTAAAATGTCACTCTTAATTTAGTATTTTTCAATAAAGTTCAAAATGTGTTGTGATGATGACACTCTCAggca
>XM_021576662.2
TATGTATGATGTGTATAGTCGCAATGCTCTGGATTTGATACGGGACAAAAACTGCGGACTCCTAATTTCGCATCAATGCAGCTCCACATGTGGAAttcacatagctagctagctaatcacGTTTGTTCCATAAAGCCTACACTCGCTATATTTATGCAATAAGCCCCAATGGGGTGTGGTAGATGGACAATATACTTTCTTACGCAtcacgcaacgcggagtgcctggatacagcccttagccgtggaataTTGGTCAAGTACAACAAACtaccgagGTGAAGGGTATCCCCGGAGGATGAAGACAAGTCAGAAAACAGATGACCGCGACACAGGAGCTAACCTGACATCACCTGTGATGGCTGCATTCAAAGTGTTCCAGCAGGAGCTAGACACCAAACATGACAAGCATGAGCGCCTGGTCAAACTCAGCAGAGACATCACCATTGAAAGCAAGAGGACAATATTTCTACTGCACAGAGTCACCAGTGTCCCAGATGTGGAGGAGGTCCTCACAGAAGCTGATCTGAAGCTGGATGGAGTGAGACTGAACATCAGAATGATTGCTGAGGAGCTCAGAGGAGAGGACCTGCACCAGTTCCATAGAGCCTTCACACCAGgtaTCCAGGAGTACGTGGAGGCTGTGTCGTTCCATCACTTCATCAGACATCGTACTCTCATCAGCCTGGAGGAGATTAACACCAAGCTGGTCTTCGTCAAGGAGCCTGAGGACACCCCAGAGAGCCAGCAGCCAATGGGAACCCCCCAAGTGCTGACCTTTCAGGTGACCCCTACAGACTACCTGTTGGGCGTGGCCGACCTGACAGGTGAGCTGATGAGGATGTGTATCAGTAGCGTGGGGAACGGGGACATGGACACGCCCTTCCAGGTGTCCATGTTCCTGCGTCAGATCCACGATGGTTTCTCCTACATCGGTAACACTGGTCCGTATGAGGTCAGTAAGAAGCTCCACACGCTGAGACAGAGCCTGTCCAAGGTGGAGGATGCCTGCTATACCCTGAAGGTGCGGGGGTCAGAGATCCCCAAACACATGCTGGCTGACGTCTTCTCCAGCAGGACAGCCATGATGGACCAGGACGAAGGAATGGCCTAGCGATGGGGGTGGGGTTTAATGGTGGAGGTGGGGTGTAATGATCTGGAAAGGGGTAGGGTTAAATGATGGGCGtggtctgtacctaggggaaacttcaccccgaGCCCTGTTACGCAgtcagggtcatgttcagtaggcaaAATGTTGTGGAACTTTGCAGATAGAAATCTATAAAGATGTGATGATTCCTTTTTCTGGATGTTcaagaggcatgtttgttctacaaagtacatttctatctgaaagtTCCACAACGTTATACCCTGGTTTGTTATTGTTCTGTGGTGACATCTGATGTTGGTCTGGATAATGCGTTTGTTATGGTATTTGGTGTCAACTGTTGTTTCATTCCAAACATTGTTCATTGCTGTTTGTTCTGAATCGGATCAGTGTCGTCACAATCTCTGCTGTGCCAAACGGTCAATCCCAATCTGAAGGTCGTTAAGTTATAGCATGTAAAATGTCACTCTTAATTTAGTATTTTTCAATAAAGTTCAAAATGTGTTGTGATGATGACACTCTCAggca

Function

symbol description
tsnax Predicted to enable RNA binding activity and endoribonuclease activity. Predicted to be active in cytoplasm and nucleus. Orthologous to human TSNAX (translin associated factor X).

NR:

description
translin-associated protein X isoform X1

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576663.2 False 1500 mRNA 0.48 8 46157634 46174248
XM_021576664.2 False 1411 mRNA 0.49 8 46157655 46174248
XM_021576666.2 False 1092 mRNA 0.47 7 46157788 46173374
XM_021576665.2 False 1435 mRNA 0.48 6 46157788 46174248
XM_021576667.2 False 1583 mRNA 0.48 8 46157789 46174248
XM_021576662.2 True 1641 mRNA 0.48 8 46157793 46174248

Neighbor

gene id symbol gene type direction distance location
LOC118942078 NA coding upstream 131834 46022894 ~ 46025800 (+)
LOC118942022 NA coding upstream 477732 45678925 ~ 45679902 (+)
LOC110515455 jag1 coding upstream 713621 45324901 ~ 45444013 (+)
LOC110499568 LOC106589976 coding upstream 1234937 44885773 ~ 44922697 (+)
LOC110499508 LOC106589972 coding upstream 1619916 44402023 ~ 44537718 (+)
disc1 LOC106595121 coding downstream 4353 46178601 ~ 46308949 (+)
LOC110499530 LOC106590013 coding downstream 238264 46412512 ~ 46501346 (+)
LOC110499521 msmb coding downstream 372389 46546637 ~ 46552961 (+)
mrpl2 rl2 coding downstream 388796 46563044 ~ 46577877 (+)
LOC118942483 NA coding downstream 406679 46580927 ~ 46588053 (+)
G1698845 NA non-coding upstream 63187 46094241 ~ 46094447 (+)
G1698841 NA non-coding upstream 69804 46082577 ~ 46087830 (+)
G1698836 NA non-coding upstream 87702 46069685 ~ 46069932 (+)
G1698830 NA non-coding upstream 92948 46064454 ~ 46064686 (+)
G1698824 NA non-coding upstream 99184 46056856 ~ 46058450 (+)
G1698892 NA non-coding downstream 43802 46218050 ~ 46218718 (+)
G1698893 NA non-coding downstream 46939 46221187 ~ 46226724 (+)
G1698905 NA non-coding downstream 71930 46246178 ~ 46248990 (+)
G1698909 NA non-coding downstream 108785 46283033 ~ 46292668 (+)
G1698919 NA non-coding downstream 147010 46321258 ~ 46335778 (+)
G1698414 NA other upstream 456533 45700090 ~ 45701101 (+)
G1698413 i2b2b other upstream 460304 45696196 ~ 45697330 (+)
G1698119 yo84 other upstream 1045273 45111566 ~ 45112361 (+)
G1697374 NA other upstream 1657788 44498660 ~ 44499846 (+)
G1698884 NA other downstream 14697 46188945 ~ 46190421 (+)

Expression

tsnax(tsnax) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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tsnax(tsnax) Expression in each Bioproject

Bar chart with 21 bars.
tsnax(tsnax) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Co-expression Network