LOC118942483


Basic Information

Item Value
gene id LOC118942483
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 46580927 ~ 46588053 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118942483
cgacctcagatcagacgagacaacccgctgaatttaagcatattactaagcggaggaaaataaactaaccaggattccctcagtagcggcgggaaatgtggtgtatagaagaccgctttgcccggtgtcgatcgggggcctgagtccttctgatcgaggctcagcccgtggacggtgtgaggccggtaacggcccccatcgcgccggggtccggtcttttcagagtcgggttgcttgggaatgcagcccaaagcgggtggtaaactccatctaaggctaaataccggcacgagaccgatagacgacaagtaccgtaagggaaaaaTGAAAataactttgaagagagagttcaagagggcgtgaaacctttgagaggtaaacgggtggggtccgcgcagtctgcccggagaattcaactcggcgggtcagggtcggccgttccggtgtggtcggatcccctcgtgggactgatccctggtcgggctcggcccccgccaggcgcatttcctctgtcggtggtgcgccgcgaccggctctgggtcggcttggaagggcttggggtgaaggtggctaccggtttcggccgtgagctctACAGTGCCCCTGCTCCGTACttgccgctttccggggccgaggacttagtagccgctgcgtcatgtccctctgcgggggggcacggggccccttgcccccggcgcgactgtcaaccgggtcggactgtcctcagtgcgtacccaaccgcgttgcgtcgccagggtagggatcggctcacgtaaactggcgccaggggtcagcggcgatgtcggcaacccacccgacccgtcttgaaacacggaccaaggagtttaacgcatgcgcaagtcagagggttttctctgAACACttcccgtggcgcaatgaaagtgagggccggcgcgtgtcggctgaggtgggatcccgaccccgtcgggcgcaccaccggcccgtctcgcccgctttgtcggggaggtggagcgtgagcgcatgcgataggacccgaaagatggtgaactatgcctgggcagggcgaagccagaggaaactctggtggaggcctgggtataggggcgaaagactaatcgaaccatctagtagctggttccctccgaagtttccctcaggatagctggcgctcgaagtctcgcagttttatctggtaaagcgaatgattagaggtcttggggccgaaacgatctcaacctattctcaaactttaaatgtgTAAGAAACctggctcgctggcttggagccgggcgtggaatgcgagctgcctagtgggccacttttggtaagcagaactggcgctgcgggatgaaccgaacgccgggttaaggcgcccgatgccgacgctcatcagaccccagaaaaggtgttggtcgatatagacagcaggacggtggccatggaagtcggaatccgctaaggagtgtgtaacaactcacctgccgaatcaactagccctgaaaacgGATGGCGCTGGAGCCACCCGgtcgtcgctggcaacgagagcctcgagggctatgccacgacgagtaggagggccgccgcggtgagcacggaagcctagggcgcgggcccgggtggagccgccgcgggtgcagatcttggtggtagtagcaaataatcaaacgagaactttgaaggccgaagcggagaagggttccatgtgaacagcagttgaacatgggtcagtcggttctaagagatgggcgaacgccgttcggaagggaggggcgatgtcctccgtcgcccccggccgatcgaaagggagtcgggttcagatccccgaatccggagtggcggagatgggcgccgcaaggcgtccagtgcggtaacgcgaccgatcccagagaagctggcgggagccccggggagacttctcttttctttgtgaagggcagggcgccctggaatgggttcgccccgagagaggggcccaagccctggaaagcgtcgcggttccggcggcgtccggtgaacTCTCGCTgacccttgaaaatccgggggagagggtgtaaatctcgcgccgggccgtacccatatccgcagcaggtctccaaggtgaacagcctctggcatgttagaacaaggtatgtaagggaagtcggcaagtcagatccgtaacttcgggataaggattggctctaagggctgggtcggtcgggctggggtgcgaagcggggctgggctcgagccgcggctgggggagcagttgctccgcctcctttctctcgccactgctgaaagttcgttgtgcggcccatctcgtgggctctcgtttgtggtctcgcaaggggctgcttatgtgggttcattggggtggtgtccgtcggcgtcctgAAGGTGGATcagtgggggtctggttggtggttggcagcggcgactctggacgcgtgccgggcccttctcgctgatctccccagctacggtgctcgctggcctcgtttacgcggggtctccggcgggttgcctcggctggcgcctagcagctgacttagaactggtgcggaccaggggaatccgactgtttaattaaaacaaagcatcgcgaaggcccaaggtgggtgatgacgcgatgtgatttctgcccagtgatCGATTTCAGCCCCGGACTCGAGGGGTTATTACGAACTCTGCATGAGGTTCAGTCGAAGAGAGGGCGCTACCCAAGTCGAAGTACACCCTTGTAGTAGGGAGTGGACTAAAGGGAAGGACAGAATTGCCATCTCTGGCGGGTTAGCGCGGTGAGGTAAGGGAGGAGCCCTCTAGTAGGGCTTCTTCAACCCCTACCCGTGCGACACCCGACAGAGGTGGCTATTTTACTGTAATTTGAGGGCCATCCAACTACCTTGGGCGGGctgatgtggggggggggtgagagagggctTGCATGGTAGAACATGTTTGAGCTCAAATACCCCTCCCGTATGAAGTCCGATTAGGGTGGAAAATCTCTAGCATGTATGTGCAGAGGTGAAAACTGAGAGTGATGGTACAAATCCAGCCCGCTGGATAGGGAAGTCCAAGACACTGAGAACGGCTGGCTAAGCGTTCTGCGGTGACAGTCTGACCACAGATAGCTGTGGTGTAACATACAATTTGCGTTCTCTGCTTGCTTAGGCAGCTCTGAACCGCGTGGTTCGAATTGAACGCCGCCTGTTACGAGTGAACATTAAATGGGGATGGCCGGTGCCAAGCGGTTATGTACTACCAGGCCTCAGGTTAGCCTGAGGCGGGACTCTACACGTCATGGTGGGAGCTCTCTCCACGCTCCTCGGAGCACGAAGTGGAATGGCATGTGACTGGCCATTAGCTGACACTACCAGGCCTCAGGCCTGCCTGAGAGCGGGACCTCACACATTATATGTGTGTTTGTCCCCCCTACGTTCGGAGACTCAAGACAGTGAAACCCAATAGGCCCTGCGGTGATAGGTCATTGCAAGGAGGCTCATGTCTGGGGCGCGTAACGCATGGGGGTTGGGGGTAGGAGAGGTGTCACAGTAGTACTTCTCTATATAGAGGAGGCGTGGCTCCAATTCTGCAACTGACACCTCCTCGACCAAAGATTTGCCGCAGACCCGCCTATAGACAACCTGGGAACCTACTGAGCGAAGTCACTAGAAGAAATTCGATGAGGCATGCTCACTGGAGCATTCGCACTCAAATCACCCTCGGGGTGACTGTGGCCCCCCCCACGCAAGTGGGGAATATCGATAACGCGATGGTAAAGAGTGGTTATCCTATGGCTTGTCTAGGAGGGCCGGCAGGGAAGGAAGGATATGATGAGAAAGCAAGCTTCCTCTGCTCCGCATAGTCCACTCTCGGTTGATGGCTGTGATGAAAGTACATGCGGGTGACGTGGGGGATTTCTCTCCTATGAGTAATGTGCAGGCACTTGATGTCGACCGGGTGTAAAAGCCCTCTGCAAAGACCCTGGGAGGTAAGCCTCGGGGCTACTGATGCGCAGTATATAGCGCAGAATGTCGGTCACAACGATTATGTCGGCGTCCATTTGAGGATGTCCGACCGTAGCGTGCATACACTCCTTGTCGCGTCGTAACCCGGCTGTGTTCCCTCACGAAAGTGAGGGAGCTCGACGAAAGGCGGTGTGTTGACGGCGAtcgtaactatgactctcttaaggtagccaaatgcctcgtcatctaattagtgacgcgcatgaatggatgaacgagattcccactgtccctacctactatctagcgaaaccacagccaagggaacgggcttggcggaatcagcggggaaagaggACCCTGTTGaacttgactctagtctggcactgtgaagagacatgagaggtgtagaataagtgggaggccccggccgccggtgaaataccactactcttatcgttttttcacttacccggtgaggcggggaggcgagccccgagcgggctctcgcttctggtttcaagcacccggctcacgtcgggtgcgacccgctccggggacagtggcaggtggggagtttgactggggcggtacacctgtcaaacggtaacgcaggtgtcctaaggcgagctcagggaggacagaaacctcccgtggagcagaagggcaaaagctcgcttgatcttgattttcagtatgaatacagaccgtgaaagcggggcctcacgatccttctgactttttgggttttaagcaggaggtgtcagaaaagttaccacagggataactggcttgtggcggccaagcgttcatagcgacgttgctttttgatccttcgatgtcggctcttcctatcattgtgaagcagaattcaccaagcgttggattgttcacccactaatagggaacgtgagctgggtttagaccgtcgtgagacaggttagttttaccctactgatgatgtgttgttgcaatagtaatcctgctcagtacgagaggaaccgcaggttcagacatttggtgtatgtgtttggctgaggagccaatggtgcgaagctaccatctgtgggactATGACTGAatgcctctaagtcagaatcccccctaaacgtaataataccgtagcgccgtggagcttcggttggcccgggatagcctgcctcttttggcaggtgagtagagccgttcgtgacagggtcggggtgcggccgaatgagttgccgcccctctcctgatgcgcaccttatgtttgtggagaacctggtgctaaatcactcgtagacgacctgattctgggtcagggtttcgtgcgtagcagagcagctcactcgctgcgatctattgaaagtcagccctcgatccaagcttttgt
>TU1944010
agacgagacaacccgctgaatttaagcatattactaagcggaggaaaataaactaaccaggattccctcagtagcggcgggaaatgtggtgtatagaagaccgctttgcccggtgtcgatcgggggcctgagtccttctgatcgaggctcagcccgtggacggtgtgaggccggtaacggcccccatcgcgccggggtccggtcttttcagagtcgggttgcttgggaatgcagcccaaagcgggtggtaaactccatctaaggctaaataccggcacgagaccgatagacgacaagtaccgtaagggaaaaaTGAAAataactttgaagagagagttcaagagggcgtgaaacctttgagaggtaaacgggtggggtccgcgcagtctgcccggagaattcaactcggcgggtcagggtcggccgttccggtgtggtcggatcccctcgtgggactgatccctggtcgggctcggcccccgccaggcgcatttcctctgtcggtggtgcgccgcgaccggct
>TU1944009
cgtcgggcgcaccaccggcccgtctcgcccgctttgtcggggaggtggagcgtgagcgcatgcgataggacccgaaagatggtgaactatgcctgggcagggcgaagccagaggaaactctggtggaggcctgggtataggggcgaaagactaatcgaaccatctagtagctggttccctccgaagtttccctcaggatagctggcgctcgaagtctcgcagttttatctggtaaagcgaatgattagaggtcttggggccgaaacgatctcaacctattctcaaactttaaatgtgTAAGAAACctggctcgctggcttggagccgggcgtggaatgcgagctgcctagtgggccacttttggtaagcagaactggcgctgcgggatgaaccgaacgccgggttaaggcgcccgatgccgacgctcatcagaccccagaaaaggtgttggtcgatatagacagcaggacggtggccatggaagtcggaatccgctaaggagtgtgtaacaactcacctgccgaatcaactagccctgaaaacgGATGGCGCTGGAGCCACCCGgtcgtcgctggcaacgagagcctcgagggctatgccacgacgagtaggagggccgccgcggtgagcacggaagcctagggcgcgggcccgggtggagccgccgcgggtgcagatcttggtggtagtagcaaataatcaaacgagaactttgaaggccgaagcggagaagggttccatgtgaacagcagttgaacatgggtcagtcggttctaagagatgggcgaacgccgttcggaagggaggggcgatgtcctccgtcgcccccggccgatcgaaagggagtcgggttcagatccccgaatccggagtggcggagatgggcgccgcaaggcgtccagtgcggtaacgcgaccgatcccagagaagctggcgggagccccggggagacttctcttttctttgtgaagggcagggcgccctggaatgggttcgccccgagagaggggcccaagccctggaaagcgtcgcggttccggcggcgtccggtgaacTCTCGCTgacccttgaaaatccgggggagagggtgtaaatctcgcgccgggccgtacccatatccgcagcaggtctccaaggtgaacagcctctggcatgttagaacaaggtatgtaagggaagtcggcaagtcagatccgtaacttcgggataaggattggctctaagggctgggtcggtcgggctggggtgcgaagcggggctgggctcgagccgcggctgggggagcagttgctccgcctcctttctctcgccactgctgaaagttcgttgtgcggcccatctcgtg
>TU1944022
TGAACATTAAATGGGGATGGCCGGTGCCAAGCGGTTATGTACTACCAGGCCTCAGGTTAGCCTGAGGCGGGACTCTACACGTCATGGTGGGAGCTCTCTCCACGCTCCTCGGAGCACGAAGTGGAATGGCATGTGACTGGCCATTAGCTGACACTACCAGGCCTCAGGCCTGCCTGAGAGCGGGACCTCACACATTATATGTGTGTTTGTCCCCCCTACGTTCGGAGACTCAAGACAGTGAAACCCAATAGGCCCTGCGGTGATAGGTCATTGCAAGGAGGCTCATGTCTGGGGCGCataaagACATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118942483 False 5307 mRNA 0.56 1 46580927 46586233
TU1944010 False 523 lncRNA 0.58 1 46580939 46581461
TU1944009 False 1345 TUCP 0.61 1 46581870 46583214
TU1944022 True 308 lncRNA 0.56 2 46584111 46588053

Neighbor

gene id symbol gene type direction distance location
mrpl2 rl2 coding upstream 3050 46563044 ~ 46577877 (+)
LOC110499521 msmb coding upstream 27967 46546637 ~ 46552961 (+)
LOC110499530 LOC106590013 coding upstream 85429 46412512 ~ 46501346 (+)
disc1 LOC106595121 coding upstream 271978 46178601 ~ 46308949 (+)
tsnax tsnax coding upstream 406679 46157634 ~ 46174248 (+)
G1698856 NA non-coding upstream 34419 46098520 ~ 46546508 (+)
G1699003 NA non-coding upstream 43862 46536402 ~ 46537065 (+)
G1699002 NA non-coding upstream 44981 46535122 ~ 46535946 (+)
G1699000 LOC106590727 non-coding upstream 54369 46524622 ~ 46526558 (+)
G1699023 NA non-coding downstream 5006 46591239 ~ 46591559 (+)
G1699024 NA non-coding downstream 5726 46591959 ~ 46592171 (+)
G1698884 NA other upstream 390506 46188945 ~ 46190421 (+)
G1698414 NA other upstream 879826 45700090 ~ 45701101 (+)
G1698413 i2b2b other upstream 883597 45696196 ~ 45697330 (+)
G1698119 yo84 other upstream 1468566 45111566 ~ 45112361 (+)

Expression


Co-expression Network