G1654867


Basic Information

Item Value
gene id G1654867
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 4250718 ~ 4333056 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1894167
ataagagacaagtccgaaaggtaccaggcggcaggcaggctcgaggtcaggacaggctgaatggtcaggcaggagggctcagtgtcagggcaggcagaaaaggtCGGAACCGGGAGGGCTAAAAAACAGAGACTAGGAACACAGGAGCACAGAAAAAACATGTTGGTACGCTTGACAAGACGTACCGGCAACAGACAAACCGAGAACACAGGTGTAAatgcactggggataatggggaagatgggcaacacctggaggggggtggagacaagcacaaagacaggtgaaacagatcagggtatgACAGTAGCCCCTCAAGGAAGCAACTCCAGTCTGTATAGCGTGTCAATACATTGAGTGTGTAAAACATTAGGAACCTCTCCTAATTTTGAGTTTCAaccccttttgccttcagaacagcctcaatttgttgggatatggactctacaaggtgtcgaaggtgttcaacagggatgctggcctatgttgactccaatgcttcaaacagttgtgttaagttggctggatgttattctttaacctgtctccttcccatctttactgattgaagtggatataaCAGGTGATATAAATAAGGccttcatctggattcacctggtcagtctatatcatggaaagagcaggtgttcctaatgttttgtacactcagtgtacattgtCCATTGTTCATTAGTTGGTGTGGAGTAATCATTGTCTAAATATCCTGGTCCACGggcaatataataataacaaagtCCAATGTTCAGAAATGATAATAATGTGTTCCTTTTACCCAATTGAGGGGGTGTCCTCATCATTGTCTTATGCTAAGGGTCACATCACAGCCAATAGGCTAGGCTGCATGATTGTGGGTGGATAGCATACCTGAATATTGAGACAGTCAAATTGGGGTTAGCCTAGATCTGTCGGCTCGTCCCCTTTTGTGTTGGGCTTGATGTGCTTCTCGAAGAATTCCACTGCGTCCTTTGCAGTGGAAAacgtgtgtgttgtgtttcataAGGTCAAGATGAGTTTTACCGGGTTTACTCAGGTTTAGATTGCGTAGCTGGGATCTCACCTAGTTGTAGGTTGCCCTCTGTTCAGCAGTTCGGCATTCAGATCGTGGTAGATTCTGATCCTCTTTTCTGCATATGCCCCGATTCCTTTGCGAGGTGAACAATTTGGTGTTTGACATCAAAACTGTGGATTTGTACAATCAGGCACGACATCCAGAGGACCCGTGCAGTGTGCAATGTTTATCAGTGGCATGGGACTCAGCTTCTTCTGCCCAAACAGTTGATTGAAATGATAGCTCATGAAGGAAGTTTCAAGTCCTGTGACCCTCACATTGAATTTACAAGAATAAGTTTAGAGTGATTCTTTTTTAGAAGATTGATTTCCCACTGTCTCCAAATGTTACACTTTAGTTGATTAGGTATCCACTTTAGAAATTAAGAGTGCAAGTTTTAATTGCATGTCAAGGTCAGAGGTAATTTTCTCACAAACAATCTCTCGGATAGTAGTGGCAAAATCTTTTTTGTTGCCGAATGTTGAGAGCTGCCATGTTCCCACAGGTGAATTGTGAAAGGACAGAATATGCCAGCTGCTGGAGTGAAATAGACCTGCTATTGTTCCTCGTAATCCAATGAGTTCTATACCTTATTGTAATGTTGCCAGTTAAttgaaaataagtgttaattcctAGTTATTTTGTAAAAGAAAGTCACGAAAAAGCGACCAGTTTCAATTATTGAATAAAAATAGGCAAGTGTGATCACATTTATAGTAGAATAAATGCTCCAGTACCTGTTTCAAAGTATTTCTGCCAttttgtttcatagctggtaAATAAATAGCACAAAATCAAAGATCTACGAATCCTATATAGTCTATCCCACCTCGTACTGCAACACTGTCTAGCTGGGGGCTGTGAGCACAGGAAGAGCCACGTCAAAGATTCATTTTTTAGACACTCTGCGCACAGGCCTAAAATTTGGTCTAAATAACTTGAAATGAGAGTCTACTTTTCTTCAcaagctaggttgtttttctatgtttgagtTTCAACTGCTAGGGAAGAGAAGACAATGCTTCTACTAATCAGACTCAATCTCACAAGCACAAACGTGACTTAAGTCACACTATCATGGTAACCTCCTGCCCTTAAAGGAGCAGGTGAAAATGTTTGTCTCATCTGTGATATTTTGATAAATGTGATAAATTACTCATAAATTACTCAtgtcataaaaaaatacatattattCAATATACCACATTAGTTTCTTATTTTCTTACTCGTAATACATGTATTGTTTTAGAAACATAACAAAGCATGCTcatctgtttttttgtgttttgttggtATAATTTTCTctgctatttttttttatgtatctaCCTGCCAGTGACTGGTTGACCAAAATGTTAATTTATTGCCATGTTCCTCACCTTGAAAGTTGCCTATGGGCAAGGAGAAACTGAAATCCATGGCTTGATTTTATTTAAACAGCCATTGCAAACGTCATCTAACTTTAGCCACGACGGGCTAACGATCAATGGAATTGATAGGGGAATGTGAGCATGTATTACTTATTTTTTGCTAAATTACCATGTTATTAACATCAAACCATATATATAGTTGATTTCCGGTTATTTGTCAATTTTTgtgggggttagggtcaggtcTTACCGACAGGAGTGTCCTCTGTCAGACTGAAGAGTGCCAGGTTTCCGTTGCTACTGTAGGGCCCATTATCGTAGAAAAATGGGGCGTAGTCTGCTTGTGCTAGAAGAGATAGACCAGGACTCTAATCCATTTGTTGTTATACTGTACTGCTAATTCCCCCTAATGACATCTTAGCACTGGCTGTTGGTGTCAGATAAACAGAGCAGGGTATATTGTACTAACCCCCTCTGCTTTCTCTATCCCTTGACTGGGATTACAGGCGCAGTTACGTCAACCAGCCCAAAAATATACACACTTTTCTTGACTTTTCCCCACGCCATCAAATGTAATTAAAATAGCTTTTTTTTcaaatacatacagtattcacAATTGATGGTACTGTGGTGTAATTTTACATTCTTCAAAATCACTTGGGCGTTTCAAACAATATCCTACAATACTACTTCTATTAAATCATAAGATATTGCACTCACTTGCAACTAGCAGGTAAGCAGGTGACGGGAGGAAAGGCAAGCATTAAATACAGAACAGGAAAAACAGGTTCTTAGCTCTACAATGTATGATTATGAAAATGCTAGCCATCTCTCAAAGCCCTCTAGTGCAATTGAAAACCATTAACAATCAGAGCAAAGCTTATTTAAGTTGCCAATCAGGTATACATGAAGCAAAAAGAAAAAGGTAGACTTACCAAAGCAAACATGCACTAATACAAGAAGCAGTGAAAAATGTAACTTCTTGACATTCTTCATCCTAGAGAGCAAAGCCATGAAAGCACACCAAGAAAAGAGCTTGTGGAGGTATATATACTACAGTTAGTTTTGTACACGAGGTGTCCTTCAAGGTGTTTTACGGGGAACTAGAGAAGGAAGGCTTAGGCAGATGCCCACATACTAATCCAATAACACGTCTTAGCCCCGGAGACGCATATAGACCCCCCTTCTCTCCAATCAGGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1894167 True 3639 lncRNA 0.40 2 4250718 4333056

Neighbor

gene id symbol gene type direction distance location
LOC110498828 LOC106578366 coding upstream 75873 4150196 ~ 4210102 (+)
trnai-uau-45 NA coding upstream 645610 3605015 ~ 3605108 (+)
trnai-uau-44 NA coding upstream 655992 3594633 ~ 3594726 (+)
trnai-uau-43 NA coding upstream 683789 3566836 ~ 3566929 (+)
trnai-uau-42 NA coding upstream 689874 3560751 ~ 3560844 (+)
trnaf-gaa-84 NA coding downstream 54411 4387467 ~ 4387539 (+)
trnai-aau-5 NA coding downstream 55351 4388407 ~ 4388480 (+)
trnaf-gaa-85 NA coding downstream 55507 4388563 ~ 4388635 (+)
trnai-aau-6 NA coding downstream 56448 4389504 ~ 4389577 (+)
trnaf-aaa NA coding downstream 56604 4389660 ~ 4389732 (+)
G1654756 NA non-coding upstream 141707 4108774 ~ 4109011 (+)
G1654755 NA non-coding upstream 141981 4108488 ~ 4108737 (+)
G1654750 NA non-coding upstream 145900 4104602 ~ 4104818 (+)
G1654431 NA non-coding upstream 285818 3964656 ~ 3964900 (+)
G1654934 NA non-coding downstream 29144 4362200 ~ 4362429 (+)
G1655102 NA non-coding downstream 35574 4368630 ~ 4369912 (+)
G1655116 NA non-coding downstream 54848 4387904 ~ 4396712 (+)
G1655117 NA non-coding downstream 61100 4394156 ~ 4396122 (+)
G1655115 NA non-coding downstream 65812 4398868 ~ 4399256 (+)
G1654426 NA other upstream 295253 3949437 ~ 3955465 (+)
G1654400 NA other upstream 353328 3897103 ~ 3897390 (+)
G1652237 NA other upstream 2506338 1743923 ~ 1744380 (+)
G1652131 NA other upstream 2601583 1648922 ~ 1649135 (+)
LOC110498791 brsk1 other upstream 3607094 613176 ~ 643697 (+)
G1655848 NA other downstream 894496 5227552 ~ 5229928 (+)
G1656720 NA other downstream 1657418 5990474 ~ 5993750 (+)
wu:fj29h11 LOC106589505 other downstream 2682609 7015665 ~ 7074332 (+)
G1658572 NA other downstream 3371450 7704506 ~ 7705151 (+)
unk LOC106589472 other downstream 4060615 8392044 ~ 8401533 (+)

Expression


Co-expression Network