G1657768


Basic Information

Item Value
gene id G1657768
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 6377342 ~ 6379507 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1897399
ACTGTTAAAACCAATGATATATATAAAGCCTTGATTGCTGATGCTAAtgtatgtattggccaatgacaggctttgaagccactggtcggccatattggcactcctcagaaaagcattcctcaataagaatgaatggaattctaaatCTTctctagtgtgtatatataaatgatTGGTTAAAACAAAAAGGTGGGACCAACATACCACCTTGCCATGTGCCCTCCATTTTCCTTGGATGCATCAACCCCATAGTTGACATCATTCTATGGGGCCGTTCTCAAACCGCTTTCCCTGTTCATCCTTTCTGTGTTCATGTCTAAATGCAACATAACTTTTGTAGCAAGCATATTTGAGATGTATAGTGTTATTAGATACTCCAGACTCTGGTGTTTTGACATCCTTGAGCTTTTTTGCACTTGTTGTAATGTGGTAAACTGACATGTCCTCGTGCCAATATGTTATAGTGCCATTTTGTTCTTTATGCTTTCATTGGTATTACCTCTTTACCCCAATTGTTTGTGCTCTTATGGATAATGCCTTGTTACAACTAATGCGTCTACATCCTAAACTTAGCAATGGGAGAGGGGGCTTGGcttttgcgtgcgtgtgtgtgtgtgattaaaggCATCAGGTTATGAGGGGTCACTGCACTGCGTTACTGTTCTGATCTTTATATAGTATGGATATGTAGATCAACCAACCTTAATTATATCGATACCTACTCTAAGCTGCTGCTTGTGAACAAGGAGGTTGCCTTCTCCCAGTACGTGTCAGTGGTGTACTACTTGAACATGGGGTACTTTAATGCTGTACTGTATGAGGCAGGCTACTGTAGCTCATTTGACAGATAAACTGTTATTTTAAATAAAAATCAAAGCAAGCAAACCAGCGCATTACTTTTTCAGTATCAACTTCTAATATTAATTCATTTGAGCGCAGTGGAATCCACACATGGTTTGACCAACATAAAACAATCACCAGTGCTGAATAGTTATCCAAGTTGTTTTCATCTATCTCTAGACCATTAGAATACCAGTATATATAGGTTTTGAATGCAGCATATGGTACAGTAGTTATGGATAACTGAGGCAGTTTGGTTTATGGTCATATGTGTGCTGCTGTGGTAGTTTACACTGGCTGTTCTCTTGCATTGATAAAAATGTTGCCAAGCTTAGGAGGTTAAGCCTCCAAATCCAGACCAGAAGTTGTGCCAAAACAGCGTTTACAAaagaattaataaaaaatgaatagaGAGGCTATTTTTCTCTGGGTcacaaaatgtatgtaaatatggATAGTTTATATTAAATTCCTCATTAATTATTTAATGATGTATTGTACTTTTTAAATGTTCTGAATTGAAC
>TU1897398
actcactaccgagttctaaactgcctctggaagcaacatcagcacaataactgttggtcgggagcttcatgaaatggttttctATGGCAGAGCAgccgtacacaagcctaagatcaccatgcgcaatgcaagtgtcgactggagtggtgtaaagcttgccgcaattggactctggagcagtggaaacgcattctctggagtgatgaatcaggcttcaccatctggcagtctgacggactaatctttgtttggcagatgccaggagaaagcttcctgccccaatacatagtgccaactgtaaagcttggcagaggaggaataatggtctggggctgttttttatggttcgggctaggctccttagttccagtgaagggaaatcttccATACAGACATGGTTGGTgtagatcggtgtggaagaacttgactggcctgcacagagccctgacctcaaccccatcaaatacctttgggatgaattggaacactgactgtgagccaggcctaatcgcccaacatcagtgcccgacctcactaatgctcttgtggctgaatggaagcaagtcatcGCAGCAATGTTACAATAATcttgtggaaagcctttccagaagagtggaggctgttatagcagcaaagaggagaccatcaccatattaatgcccatgatttagaatgagatgttcaacaagcaggtgtccacatacttttggttatgtagtgtatttGTCAGTGTCCATGAATAGCCTAACAttttgaaggaaggaaggatCGGTATTGAACCACATCACCATTAAAGGACGTCACTGTTAAAACCAATGATATATATAAAGCCTTGATTGCTGATGCTAAtgtatgtattggccaatgacaggctttgaagccactggtcggccatattggcactcctcagaaaagcattcctcaataagaatgaatggaattctaaatCTTctctagtgtgtatatataaatgatTGGTTAAAACAAAAAGGTGGGACCAACATACCACCTTGCCATGTGCCCTCCATTTTCCTTGGATGCATCAACCCCATAGTTGACATCATTCTATGGGGCCGTTCTCAAACCGCTTTCCCTGTTCATCCTTTCTGTGTTCATGTCTAAATGCAACATAACTTTTGTAGCAAGCATATTTGAGATGTATAGTGTTATTAGATACTCCAGACTCTGGTGTTTTGACATCCTTGAGCTTTTTTGCACTTGTTGTAATGTGGTAAACTGACATGTCCTCGTGCCAATATGTTATAGTGCCATTTTGTTCTTTATGCTTTCATTGGTATTACCTCTTTACCCCAATTGTTTGTGCTCTTATGGATAATGCCTTGTTACAACTAATGCGTCTACATCCTAAACTTAGCAATGGGAGAGGGGGCTTGGcttttgcgtgcgtgtgtgtgtgtgattaaaggCATCAGGTTATGAGGGGTCACTGCACTGCGTTACTGTTCTGATCTTTATATAGTATGGATATGTAGATCAACCAACCTTAATTATATCGATACCTACTCTAAGCTGCTGCTTGTGAACAAGGAGGTTGCCTTCTCCCAGTACGTGTCAGTGGTGTACTACTTGAACATGGGGTACTTTAATGCTGTACTGTATGAGGCAGGCTACTGTAGCTCATTTGACAGATAAACTGTTATTTTAAATAAAAATCAAAGCAAGCAAACCAGCGCATTACTTTTTCAGTATCAACTTCTAATATTAATTCATTTGAGCGCAGTGGAATCCACACATGGTTTGACCAACATAAAACAATCACCAGTGCTGAATAGTTATCCAAGTTGTTTTCATCTATCTCTAGACCATTAGAATACCAGTATATATAGGTTTTGAATGCAGCATATGGTACAGTAGTTATGGATAACTGAGGCAGTTTGGTTTATGGTCATATGTGTGCTGCTGTGGTAGTTTACACTGGCTGTTCTCTTGCATTGATAAAAATGTTGCCAAGCTTAGGAGGTTAAGCCTCCAAATCCAGACCAGAAGTTGTGCCAAAACAGCGTTTACAAaagaattaataaaaaatgaatagaGAGGCTATTTTTCTCTGGGTcacaaaatgtatgtaaatatgg

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1897399 False 1364 lncRNA 0.38 1 6377342 6378705
TU1897398 True 2096 TUCP 0.42 1 6377412 6379507

Neighbor

gene id symbol gene type direction distance location
LOC110498858 wdr24 coding downstream 2913 6363906 ~ 6374429 (-)
LOC110498857 LOC101479821 coding downstream 32693 6335525 ~ 6344649 (-)
LOC110498855 LOC106578264 coding downstream 61243 6306325 ~ 6316099 (-)
LOC110498856 LOC106578265 coding downstream 71360 6261959 ~ 6305982 (-)
LOC110498853 ube2i coding downstream 116076 6236177 ~ 6261266 (-)
LOC110498859 LOC106578257 coding upstream 967 6379672 ~ 6446042 (-)
LOC110498729 rhot2 coding upstream 83710 6462415 ~ 6482198 (-)
LOC110498862 LOC106589520 coding upstream 145775 6524480 ~ 6534807 (-)
LOC110498863 LOC106589519 coding upstream 158066 6536771 ~ 6542492 (-)
LOC110498864 LOC106589517 coding upstream 192629 6568700 ~ 6582912 (-)
G1657811 NA non-coding downstream 10996 6365984 ~ 6366346 (-)
G1657767 NA non-coding downstream 17298 6359459 ~ 6360044 (-)
G1657678 NA non-coding downstream 146667 6230413 ~ 6230675 (-)
G1657816 NA non-coding upstream 39080 6417785 ~ 6418054 (-)
G1657817 NA non-coding upstream 39456 6418161 ~ 6418458 (-)
G1657851 NA non-coding upstream 100915 6479620 ~ 6480071 (-)
G1657859 NA non-coding upstream 116213 6494918 ~ 6495625 (-)
G1657860 NA non-coding upstream 117779 6496484 ~ 6496797 (-)
G1656633 LOC106578283 other downstream 515871 5857960 ~ 5861471 (-)
lyrm1 lyrm1 other downstream 522969 5844691 ~ 5854645 (-)
LOC110499577 LOC106578324 other downstream 1200524 5161588 ~ 5176857 (-)
G1657862 NA other upstream 121129 6499834 ~ 6500208 (-)
G1657868 LOC106589521 other upstream 126916 6505621 ~ 6507929 (-)
G1657869 LOC106589521 other upstream 130414 6509119 ~ 6509580 (-)
LOC110498913 h3f3b other upstream 2008263 8386968 ~ 8389308 (-)

Expression


Co-expression Network