G1657423


Basic Information

Item Value
gene id G1657423
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 7257137 ~ 7261264 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1897032
CATCATTTTATAACAGACATACTCCTCACCATTACCACAACAGCTTtgtcaatatttttttatttttttttatttaactaggcaagtcagttaaagaacagattcttattttcaatgacggcctagaaacagtgggttaactgcctgttcaggggcagaacaacaaatttgtaccttgtcagctcgggggtttgaacttgcaaccttccagttactagtctaacactctaaccactaggctaccctgccaccccaatatgACTTGCCCATGATAATTGACCATCCATTGTTATACCTAGGAGTTCagcttcctcaacttgctcaatgttCACACCCTTTATGTACAACTCCAGTTGACGTTTAGGTCTTTAGAGAatgttttgaaccaaatacaatgctattagTAGATGTGTTTAAGACCAGTTTATTATTAATCACCCATTCTGATTGAACTGTAACTCCCTATTTAGAATTTCAGTGAGCTCACTGACTTTGGGTGGTGACATGTAGTGTGGAATTATCTGCATACGTAGTCGTTCTAATTTTGTGTAAGACCAGTGGCAAAGcatttgtaaaaatagagaagagtaaACGGCCCAAGGACACTGCCCTGGGGGACACCGCACTGTACACATCGGATGTTAAAGAAGCTTCCACTGAATAAcactctctgggttctattggataaataactctccaaccatgtgatgGCAGATGATGTAAAGCCATAGCAAGGGAGTTTCTTCAATAACAATTTATGATTAATAACATCAAAGGCTgtactgaaatctaacaatacaaCTCCAACTGTCATCTTATTATCCATTTATTTTAACCAATCATCTGTCTTCGGAATCAGTGCAGTACAAGTTGAGTGCCCTTCActatatgcatgctgaaagtcagtagtTAACTTGCTCCCTGAAAAATAGCATTGTttttggtcaaacacaatccTCTCCATCAGTTTACTAAGAACTGGCAGCAAACTGATTGGATGGCTGTTAGAGACAGCAAAGGGTGCTTTACTATTTTTAGGTAGTGGAATTACCTTAGCTTCCTTCCAcgcctgtggacacacacactccttcaggCTTTGGTTAAATGTATAGCAAATAGGGGTGGCAatagtctgctaccattctcaatACTTTCCCATCAAgtttgtctatacctggtggcttatcattattgatggataAAATTCCAAACATCAAACCTTCTCTTTAATTATTAGATATTTTATTCAAAAATATGATGGTTCAATGTTCAATGTTGTTATTTCACTTCTGAGTTTTTCCACTTTACTAGTGAAATAGTCATTGAAATGATTGGCAATATCGAAAGGTTCTGCCCATGATATCATTGAAGGTACTCCAAGATATTTTTCCATTGCATTTTATGTCAATTATCTTTGTTTGGCAATATTTTTTATTCTTCTTTTGGTTAAGTTTATTCACATTTCTCATTGACCAATAAGTCAACCAATCAGCCTGACTTGTTTGTCACCTCTTTTGCATAATTTCTTTGAACCATACAATTGTTCAATTCATCATCAATCCATGGCGATTCTTAATAACAGGTGCATGCTTGTCAACAATTGGCCAAAATAATTGTACAAATACGTCCAGTGCTGCATTTTGATTCACTTCCTCGTACACATAAGACAACATACATTTTTGGTCACTACAGCCATTTTTGGTCACTACAGCCAATGGGAACTTTGCTTTGGAGCAAAGCTCTGCAGCATTAGTGAAGATATGATCGATACAAGCGGATGCCACAGATCCAACTCTATTGGTTTACACTCTAGTTGGTTGAGTGATATCCTGGCTCATATTTCAGGCATCAGTCACAGTTAGAGGATTCCTCTTGAGAGGACAGCTAGTTGCTAACCAGTCAATGTTCAGGTCACCCAGAAAGGAGACCTCTGTTAACATTACACACACCATCAAGCATTGGACACGTCATCaaaatactgactgttagcacttggtggccaaTAGTAGCACCCTGAAAGAAGAGACTTTAGATGAGGCAGGTGAACTTGCAATCATAACACTTCAACAACATTTGTCATGAGATCCTCTCtataagctttacaggaatatggctctgaacatatacagcaacacctctcccattgcaattcatgtattttctgtagatgttatatccctgtattgctattgctgtatcatcaaaggaattagctaagtgagtttcagagatggcCAGAATATGAATGTTATCCAATTTATTGATTTCATTAGCCTTATTTCTAAAacgacatacagtgcattcagaaagtattctgacccttgacttacagccttattctaatgattcaatatttgtttttcttcatcaatctacacaatacaatctacaataactcataatgacaaagctaaaacaggtttagacatttttgcaaatgtattcaaataaaaaaacagaagtattcagaccctttgctatgagactttatattgatctcaggtgcatcctgtttccattgatcatccttaagatgtttttacaacttgattggagaccacctgtggtatattcaattgattggacatgatatggaaagactcttcctagagttggctggccggccaaactgagcaatcaggggagaagtgcgttggtcagggaggtgaccaagaacccgatggtcactctgacatagctccagagttcctctgtggtgatgggagaaccttccagaaggacaaccatctctgcagtactccaccaatcaggcctttatggtagagttggcagacggaagccactcctcagtaaatggcacataacagcccgcttggtgtttgccaaaaagcacatcAAGGTCTCTcggacaatgagaaacaagattctctggtctgatgaatctaAGATGGAaccttttggcctgaatgccaagtgtcacgtctggaggaaacctggcaccattcctacagtggagcatggtagtggcagcatcatgctgtgaggatgtttttcagtggcagggactcagagactagtcaggattgagggaaagatggacggagcaaagtacagagagatccttgatgaaaacctgctccagagcactcaggacttctaactggggcgaaggttcaccttccaacaggacaacaaccctaagcacacagccaagacagcaaAGGAGTAGCTttaggacaagtctttgaatgtccttgagtggcccagccagagctgggacttgaacctgatcaaacatctctggagagacctgaaaatagctgtgcagcgacgctccccatccaacctgacacaacttgagaggatctgcagaaaagaatgggagaaactctccaaatacaggtgtgccaagcttgtagcatcatactcaagaagactgaAGGCTGTAATcacgccaaaggtgcttcaacaaagtactgagtaaagggcctgaatacttatgtgaatgtgacatttcaggttttttttatttcttaaaccttgtttttgcttcgtcattatggggtattgtgtgtagactaggGGAAAAAACGATGCAATgatgtaacgtaacacaatgtggaagtcaaggggtctgaatgcgtTCTGAATGCATTgcatattaatatgggctattctTAGCCCTTTCCCTGGTAGCTTATTggagatagacataatatggagACAAAAtaaatacgtgtgtgtgggatgttgggCTGAAGCTACTGACCCTGAGACTTGGCTTCAATgctcttagttgttgcggaaatcgacccactatgctgtttactttctgcatctacgtcatatcactgagtctacctttaaaccaATATTTTGGTATCATTTGGTGTTTTCTTCAACAGAAGCTTTTTGGGTCCAACGGGCTGCTGTAGAACCCGTCTCCTATTTGCATGTATTTGCACTAGTTTGAAAACATTAAAAGACAATAAAACTTATTTTGAAGCAAAT

Function

NR:

description
TC1-like transposase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1897032 True 3972 lncRNA 0.40 4 7257137 7261264

Neighbor

gene id symbol gene type direction distance location
hs3st3l LOC106589499 coding upstream 1368 7242381 ~ 7255769 (+)
LOC110498883 LOC106589500 coding upstream 44956 7201876 ~ 7212181 (+)
dhrs7cb dhrs7c coding upstream 62378 7190807 ~ 7194759 (+)
bsk146 LOC106589506 coding upstream 163597 7075481 ~ 7093540 (+)
wu:fj29h11 LOC106589505 coding upstream 182805 7015665 ~ 7074332 (+)
LOC110498885 glp2r coding downstream 228104 7489368 ~ 7506485 (+)
pts pts coding downstream 264258 7525522 ~ 7528685 (+)
LOC110498886 LOC106589493 coding downstream 273768 7535032 ~ 7579012 (+)
adprm adprm coding downstream 413085 7674349 ~ 7677005 (+)
map2k4b LOC106589490 coding downstream 416551 7611621 ~ 7696279 (+)
G1657389 LOC106589502 non-coding upstream 141095 7114911 ~ 7116042 (+)
G1657368 LOC105030512 non-coding upstream 253581 7003229 ~ 7003556 (+)
G1657366 NA non-coding upstream 255163 7001689 ~ 7001974 (+)
G1657363 NA non-coding upstream 258296 6998363 ~ 6998841 (+)
G1657361 NA non-coding upstream 261072 6995622 ~ 6996065 (+)
G1657479 LOC106589498 non-coding downstream 4995 7266259 ~ 7267044 (+)
G1657582 NA non-coding downstream 140821 7402085 ~ 7402359 (+)
G1657605 NA non-coding downstream 169777 7431041 ~ 7431260 (+)
G1657606 NA non-coding downstream 170281 7431545 ~ 7431783 (+)
G1658509 NA non-coding downstream 342538 7603802 ~ 7604299 (+)
G1656720 NA other upstream 1263387 5990474 ~ 5993750 (+)
G1655848 NA other upstream 2027209 5227552 ~ 5229928 (+)
G1654426 NA other upstream 3301672 3949437 ~ 3955465 (+)
G1654400 NA other upstream 3359747 3897103 ~ 3897390 (+)
G1658572 NA other downstream 443242 7704506 ~ 7705151 (+)
unk LOC106589472 other downstream 1132407 8392044 ~ 8401533 (+)
LOC110498922 cssa28h17orf62 other downstream 1263028 8524125 ~ 8527761 (+)
G1661477 NA other downstream 2790358 10051622 ~ 10052089 (+)
G1662037 NA other downstream 3214903 10476167 ~ 10476689 (+)

Expression


Co-expression Network