G1659721 (LOC106589477)


Basic Information

Item Value
gene id G1659721
gene name LOC106589477
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 8284510 ~ 8374399 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1899557
ccGTCAAGCCAGGCCAGTTTTAGGTGAGGCCGTTCCAATGAGCCCACAGAGGATATCAACTGCGATGTAGTGATATAAAAGTTGCACAGTatactcacgcacgcacgcacacacacacacacacttcctctccccatGCCGGTTCACTGCTTAGCTTTCTTCTGGATGGTGCCAACGGCGGAGATGACGGTGGTCTTGGTTCCGCTGGCGGTGGTTGTCACGGAGACCACCCCTGGCAGGGTTGCCGTGGTAGTGAGCAGTGCGGGCTGGGCCAGGGTCACCTTCGTCCTGTCCTTCTTGGCTTTCTCCAgtttatccatctctaccttcTGAGCTTTGGCCAGTGCCTCATAGTAAGAGTCCTCTGACCAGCCATGAGGATCAAACATGTCTTTAGGGTAGTTGGTTCCCAGTTCATCAATGCCACAGAACTGAATGAGTTTCTCATAGATActgggatTCCTGAACTCTTTCTTCTTCTGAATGTGGTTGTTTGTGTCAAAGTCTCCATGTAGATTCTTTTCATACAGCTTCTGGATCTTCTCctgtaggtgACTGGAGCAGCGCCCTGGTGGTTCAGGGGGAATCCGGATCTTGTCGGGTGACATGTTCCTCACTTTCTCTGAGAACAGAGCGACCAACTCATTGGGgtccttcctctctgcctctggGATTTCCTTATAATCATCTGTGTCTCCGCCCTCATCAGACTCTTCCATTTCTGAGTTACGCGAGctctccccactgtcctcgtctCCAGATGCCTTGTCGTCGCCATCCTCAATCCGGCTAATGTCGTCCTCTCCATAGGCAGCAGACACCAGTCCTACTCCATGGCCCTCTGTTTCTTCTACCTCTGGGTCGGAATCTGCCTCTGAATCGTCTCCATAATCCGCCAAAGAGGAGAGAAGTGCACTCTTTTTGCCGCTCGCCATTTCTCCAAAGGTCGCATAACAAAGACGTCACTTTCAGCGTCGTTTTTGAAAAAGGTATGCGTATTCGGGTCTCTGGGAAATG
>TU1899554
GCAGTATGACGTTTGTTTTATTTACCAtcctatcatcatcatcatcagtgatatatgtacatttgtaaaaaatatttcCGCTAAGCTCTTTGAATAAGCCATTGAAAATGAGACAAGAAACGTTGGTGCCAATGTCCATAGTCTGTCCAGTAGATGGTCAAAACACAGAACATAGGAAATAGCACAAATATACACTGTGGGTAGAAAGGAAATGATGTTATAGAGCCCAAaactaatagtaatatatactgTACCATAACAGGTGGGTTGATACTGTAAGATACCATTTTACAGGAGGATGGAATAAAGAAACTAACTCAAGTTTCAGTCAAGAGGCTAGCAAGTTATGCCATAACTAGGCTACTTTCTAGGTAGGGTGGTTTTCCCCATGGATAGTCTTTAGCTAACATCAAAACACTTTCTTGTcgacagaaaaaaaaaacagatcaaTGCATAACTTCAACAGGGTGCTGACTGGAGAGCTGGATGAAACAGGAACCTTATGTTGATATCAATGCAGAAATTACAGAAAAATTGTCTCATTGAATCTCAAGTCAGGCTTGAGTCCTGTGACCAAATGTTGTAGATCCAATCCCAGAGACCGACGGCAGTAGAGATGCAGAGGTTCATGTGACATCCATATTGTCTGAAGACATTCTTTCACCCTCCCCTCTTTTTGCATTTAGTAATACAGCCACACAGCTcaatgcgcacgcacacacacacacacacacaccttccgtCAGCTAATGCTGCCCCAACGCCCACCGCTTGTGTACCTGCAAGTGAGTATAAGTTGACCACATGACTCACAGGCCCAACGGGTGTATGACCGTTTCCTGTGGCACATTTATAACCTGAATTACCCCGTCTGAAGACAAACAAAGACGTATTGTACTGCTTAGGGTTGGGCGATATCACGACAGCATCGTCTATCGCCGATGATTGATAGCCATCGTCGATTGTGAACTTGACTGGCGTTTTCGCAGTGCACAGCAGGGACAAGTGACACATTCCTATTTGCTCTAGACTATTTAAAtaaatatgttatatacagaacgCAAGAGAATAATGTAGGCCAGACAGAGCGGAGAATTCCACCAAAGCAGAACAAAATGTCCagtcagaaaatattgtttccctctctctgccagtTGCATGGGCATTAGGCTATATCCTAAACCTTTTCATTTGTTTTAAGTTTTTATAAACAGACAATTCTTAGCTATCCTTTGTCTAGCGGTTTAAAAAAACGTTGGCAATattcccttcgctctctctccattcGATAGGCTATGAATATGACTTTGGGCTATAGGCTAACGTTACGCTTTAAAACATTTTATACATGGCTTTTTCAACAATGAACGTAACAGAGTTCCATTTCAAAAAGTTGTTTGAATTGCCCCCCAAAATTAAGGTAGCCAGAGGACTAATAATGAGAGAGAACAAACAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1899557 False 1017 lncRNA 0.52 10 8284510 8374399
TU1899554 True 1458 lncRNA 0.40 2 8305207 8320531

Neighbor

gene id symbol gene type direction distance location
LOC110498906 LOC106589479 coding downstream 38244 8224090 ~ 8246266 (-)
trnar-ucg-4 NA coding downstream 60747 8223691 ~ 8223763 (-)
LOC110498903 wdr45b coding downstream 77507 8197192 ~ 8207003 (-)
LOC110498897 LOC106589483 coding downstream 200144 8019327 ~ 8084366 (-)
myocd myocd coding downstream 448229 7699285 ~ 7836281 (-)
LOC110498913 h3f3b coding upstream 12586 8386968 ~ 8389308 (-)
LOC110498732 LOC106589471 coding upstream 26798 8401197 ~ 8415355 (-)
trim65 LOC106589467 coding upstream 68913 8443312 ~ 8467142 (-)
fdxr fdxr coding upstream 105951 8480350 ~ 8501294 (-)
LOC110498919 LOC106589236 coding upstream 128993 8503392 ~ 8506220 (-)
G1659698 NA non-coding downstream 36315 8247971 ~ 8248195 (-)
G1659685 NA non-coding downstream 61346 8222941 ~ 8223164 (-)
G1659654 NA non-coding downstream 129485 8154615 ~ 8155025 (-)
G1659624 NA non-coding downstream 174664 8109527 ~ 8109846 (-)
G1659612 NA non-coding downstream 190040 8091328 ~ 8094470 (-)
G1659779 NA non-coding upstream 16014 8390413 ~ 8390816 (-)
G1659777 NA non-coding upstream 16628 8391027 ~ 8391331 (-)
G1659812 NA non-coding upstream 17725 8392124 ~ 8392497 (-)
G1659816 NA non-coding upstream 28620 8403019 ~ 8403891 (-)
G1659821 NA non-coding upstream 44524 8418923 ~ 8422527 (-)
LOC110498864 LOC106589517 other downstream 1713055 6568700 ~ 6582912 (-)
G1657869 LOC106589521 other downstream 1774930 6509119 ~ 6509580 (-)
G1657868 LOC106589521 other downstream 1776581 6505621 ~ 6507929 (-)
G1657862 NA other downstream 1784302 6499834 ~ 6500208 (-)
G1657768 NA other downstream 1905003 6377342 ~ 6379507 (-)
G1661023 NA other upstream 1024718 9399117 ~ 9400947 (-)
G1661001 LOC106589450 other upstream 1048384 9422783 ~ 9460115 (-)
G1662039 NA other upstream 2102564 10476963 ~ 10477185 (-)
LOC110498953 NA other upstream 2747514 11121913 ~ 11158776 (-)

Expression


Co-expression Network