G1660451 (LOC105030512)


Basic Information

Item Value
gene id G1660451
gene name LOC105030512
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 9183905 ~ 9184712 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1900327
ggaggatgtatggatgtcttccctgtaacgcacagcattgagattgcctgcaatgacaacaagctcagtccgataatgctgtgacacaccgccccagaccatgacagaccctccacctccaaatcgatcctgctccagagtacaggcctcggtgtaatgctcattccttcgacgataaccgcaaatccgaccatcatctctggtgagacaaaaccgcgactcgtcagtgaagagcactttttgacagtcctgtctggtccagcaacggtgggtttgtgcccataggcgacaatgttgccggtgatgtcttgtgaggacctgccttacaacaggcctacaagccctcagtccagcctctctcagcctattgcggacagtctgagcgctgatggagtgattgtgcattcctggtgtaactcgagcagttgttgttgccatcctgtacctgtcctgcaggtgtgatgttcggatgtaccgatcctgtgcagttgttgttacacgtggtctgccattgcgaggacgttcagctgtctgtcctgtctccctgtagcactgtcttaggcgtctcacagtacgaacattgcaatttattgccctggccacatctgcagtcctcatgcctccttgcagcatgcctaaggcacgttcacgcagatgagcagaggccctgtgcatctttcttttggtgtttttcagagtcagtaaaaaagcctctttagtgtcctaagttttcatatctgtgaccttaattgcctaccgtctgtaagctgttagtgtcttaacgaccgttccacaggtgcatgttcat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1900327 True 808 lncRNA 0.51 1 9183905 9184712

Neighbor

gene id symbol gene type direction distance location
LOC110498733 cacna1g coding downstream 144584 8840691 ~ 9039321 (-)
LOC110498925 uts2r coding downstream 389314 8719208 ~ 8794591 (-)
LOC110498924 LOC106589234 coding downstream 607390 8575197 ~ 8576515 (-)
hexdc hexdc coding downstream 652564 8527358 ~ 8531341 (-)
LOC110498921 narf coding downstream 659867 8511436 ~ 8524038 (-)
spata20 spata20 coding upstream 8577 9193289 ~ 9271513 (-)
pkd1b LOC106589455 coding upstream 96645 9281357 ~ 9310850 (-)
trnaa-agc-8 NA coding upstream 144358 9329070 ~ 9329142 (-)
nme2a LOC106589447 coding upstream 321662 9506374 ~ 9513698 (-)
LOC110498935 LOC106589231 coding upstream 364226 9548938 ~ 9552737 (-)
G1660449 NA non-coding downstream 773 9182850 ~ 9183132 (-)
G1660433 NA non-coding downstream 12943 9170652 ~ 9170962 (-)
G1660432 NA non-coding downstream 13622 9170074 ~ 9170283 (-)
G1660431 NA non-coding downstream 13843 9169705 ~ 9170062 (-)
G1660366 NA non-coding downstream 98283 9061863 ~ 9085622 (-)
G1660452 NA non-coding upstream 112 9184824 ~ 9185111 (-)
G1660898 NA non-coding upstream 1018 9185730 ~ 9196887 (-)
G1660967 LOC106589233 non-coding upstream 147048 9331760 ~ 9334929 (-)
G1660981 NA non-coding upstream 173340 9358052 ~ 9359601 (-)
G1661017 LOC106589452 non-coding upstream 207173 9391885 ~ 9395929 (-)
LOC110498913 h3f3b other downstream 794651 8386968 ~ 8389308 (-)
LOC110498864 LOC106589517 other downstream 2612450 6568700 ~ 6582912 (-)
G1657869 LOC106589521 other downstream 2674325 6509119 ~ 6509580 (-)
G1657868 LOC106589521 other downstream 2675976 6505621 ~ 6507929 (-)
G1657862 NA other downstream 2683697 6499834 ~ 6500208 (-)
G1661023 NA other upstream 214405 9399117 ~ 9400947 (-)
G1661001 LOC106589450 other upstream 238071 9422783 ~ 9460115 (-)
G1662039 NA other upstream 1292251 10476963 ~ 10477185 (-)
LOC110498953 NA other upstream 1937201 11121913 ~ 11158776 (-)
G1663264 NA other upstream 2357904 11542616 ~ 11543091 (-)

Expression


Co-expression Network