G1660981


Basic Information

Item Value
gene id G1660981
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 9358052 ~ 9359601 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1900897
CAGCAGGACATTATGTAGTGTGAAAGTTATCAATCAAAAAAAGTAGGGTTCTCATACTCCATGATTCACTACAAAAATATATTCTAGAGACCACAGAAATGCTAAAATACCCAGCATTTCAAGAAACAGTACCAAAATATTTTGTTGCGAGATCCGACTATAGCAGCCAACCCCCATTAAAAACACACCTAACCGTTAACAGGCAGAGAATCATATAGTACATATATATTAAACATTTGACTACAATATCTTAAAATTACATTCCTAAATAACATTACTCATTGCTGTGTTCAAAAAAAGGGTTTACattataacattttaaaaaccAAGCCACCATAGAAAGTTGTAGCGTCATGTGCTACACAGGACAAATACCTACGTCAAGTTATAACTGGTTATTACACATTAATGCGCGGACGGTaggagaggtaaggagggaggTCAGTTGGCAACAAAAGCTTGGGGAGACATTTTACGGCACAGTGGTCTTATACTGCTAGTCTGGTAGTCAGATGTGTTTCTGAGTTGGCTAAAGCAACAATAGGTCTGGCTACCAGGCTTGGTGGTCTACCACCTTGTGTGGTTCAAAATTAACAGTACGGATTCCACAGATACTCCATGTTGCTCTCGCACTCAAAACAATGCCTTGTTTGGAGTGCCAGAATAAATTTGATGATTTGTCagcataaaaaaaacaacaaaaaacatttttggcTCCCTTGTACAGTTTTTCCCATCCAGCTAGATTTTACATCTCCAATAATTACACAGAATCAAAACAAAAAGGTTACAAAATCACAGGTAAAATTACATTACAAATAAAAGAATCATaggaataaaaaaaacaagtccatccccccctcctctctatatcttcCCACTCCCCCATATGCGTCTCTCTCTAGGAGACTAAGGCAAGCGAGGATGTGCAGAGCAAGGCTGCTACTGGACAAATCAGAGTTTCACAGGTCAGCTTGAGTTCAAGGGTGAAAGGCTGAATGCCTGGTGTCGGGATGAGGAGGGAACGTGAGGAAGGGGTGGATGAGTGAGTAGGGTGTGTTTAATGCAAGTATGTCTTGTGTGTGAGAACTGTAAGTGGCTTTGGATAAGCGCGTCAGCGGAATGACCATACAATCATTACTAATGTGTGGCAGGTGTAGAGGTACCAAGCGTAGCaggggtattacagtacagtggtTGGTCCCTAGGCACAGACGGTGGTCCTTCCATAGCGGTGGGcctcaaatgacaAAGCCAGTGAGTCAGTCTTTGGGGTTAGGGGCCAGGGTTCAGCCTCTCATGCTAGGGGTCAGGGGTGAGTCTCTCCGGGGGCTAGGGGCCCAAgtggtcagtagtggtagtaatagtagtgtttGTGTAGACTGCGAGGCAGGAGTCAGGAGTCGCGCGGCAGGAGTCACTAGGCAGACTCCACGATGTCTCAGGCACAAGGATGACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1900897 True 1460 lncRNA 0.44 2 9358052 9359601

Neighbor

gene id symbol gene type direction distance location
trnaa-agc-8 NA coding downstream 28910 9329070 ~ 9329142 (-)
pkd1b LOC106589455 coding downstream 47202 9281357 ~ 9310850 (-)
spata20 spata20 coding downstream 86539 9193289 ~ 9271513 (-)
LOC110498733 cacna1g coding downstream 318731 8840691 ~ 9039321 (-)
LOC110498925 uts2r coding downstream 563461 8719208 ~ 8794591 (-)
nme2a LOC106589447 coding upstream 146773 9506374 ~ 9513698 (-)
LOC110498935 LOC106589231 coding upstream 189337 9548938 ~ 9552737 (-)
LOC110498737 ca10 coding upstream 318299 9677900 ~ 9986739 (-)
LOC110498936 LOC106589191 coding upstream 1250146 10609747 ~ 10668872 (-)
LOC110498937 LOC106589191 coding upstream 1343780 10703381 ~ 10704272 (-)
G1660967 LOC106589233 non-coding downstream 23123 9331760 ~ 9334929 (-)
G1660898 NA non-coding downstream 161165 9185730 ~ 9196887 (-)
G1660452 NA non-coding downstream 172941 9184824 ~ 9185111 (-)
G1660451 LOC105030512 non-coding downstream 173340 9183905 ~ 9184712 (-)
G1660449 NA non-coding downstream 174920 9182850 ~ 9183132 (-)
G1661017 LOC106589452 non-coding upstream 32284 9391885 ~ 9395929 (-)
G1660999 NA non-coding upstream 72180 9431781 ~ 9439407 (-)
G1661056 NA non-coding upstream 114988 9474589 ~ 9474809 (-)
G1661060 NA non-coding upstream 122664 9482265 ~ 9482546 (-)
G1661061 NA non-coding upstream 123042 9482643 ~ 9482873 (-)
LOC110498913 h3f3b other downstream 968798 8386968 ~ 8389308 (-)
LOC110498864 LOC106589517 other downstream 2786597 6568700 ~ 6582912 (-)
G1657869 LOC106589521 other downstream 2848472 6509119 ~ 6509580 (-)
G1657868 LOC106589521 other downstream 2850123 6505621 ~ 6507929 (-)
G1657862 NA other downstream 2857844 6499834 ~ 6500208 (-)
G1661023 NA other upstream 39516 9399117 ~ 9400947 (-)
G1661001 LOC106589450 other upstream 63182 9422783 ~ 9460115 (-)
G1662039 NA other upstream 1117362 10476963 ~ 10477185 (-)
LOC110498953 NA other upstream 1762312 11121913 ~ 11158776 (-)
G1663264 NA other upstream 2183015 11542616 ~ 11543091 (-)

Expression


Co-expression Network